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The map label for this gene is rhmD [H]

Identifier: 119715090

GI number: 119715090

Start: 883685

End: 884863

Strand: Reverse

Name: rhmD [H]

Synonym: Noca_0845

Alternate gene names: 119715090

Gene position: 884863-883685 (Counterclockwise)

Preceding gene: 119715091

Following gene: 119715089

Centisome position: 17.75

GC content: 69.97

Gene sequence:

>1179_bases
ATGTCCACCGCCCCAGCACCCGCCGTCAGCGCGGTCCGTGCAGCGAGCACCCTCAGCGCAGACGACCTGACCATCGAGCG
GATCGAGGTCATCCCGATGCGGGTGCCGTTGGCGCGGCTCTTCCAGGGCTCGCACTACTCGATGTCCACGCGCTGCACGA
TCGTCACGCGCCTGCACACGCGCTGCGGCCTCGTCAGCGAGGTCTACAACGGCGACACCGACGCCGAGCAGTCCGTCATC
GTCGGCATCATCCGCGACGAGATCGTCCCGCAGCTGATCGGCCGCAGCGCCCTGGCCCACGAGTCCTGCTGGGAGGCGAT
GCTCCCGCCGACCTATGACATCCTCCGGGACCGCTCCGTCGCGCTCCAGGCGATCGCGTGCCTCGACTCGGCGATCTGGG
ACGTCGTCGGCAAGGCCGTCGGCCTGCCGCTGTTCCAGCTCTGGGGGGGCTACCGCGACCGGCTACCCGCGATCTGCATC
GGCGGGTACTACAGCGACGACGAGGCCGACATCGGCCGCCAGATCGAGCGCTACCTCGACCTCGGGTTCGCGGGGTGCAA
GTTCAAGGTCGGCCGCCTCACCCCGGCCGAGGACGCACACCGGACCCGCCTGGCCCGCAAGGCCGCCGGCGACGACTTCG
TGCTGATGGTCGACGCCAACCAGGGCTTCACCCGCCGGGGCGCGATCGAGTTCGCCGGACTGACCGAGGACCTCGACCTG
CGCTGGTTCGAGGAGCCGGTCGGTTGGGTCAACGACCGGCTCTCCATGCGCGACGTGCGCCTCACCACCGGGATCCAGGT
GGTGGCCGGCCAGAGCGAGGACACCCGGGCCGGGCTCCGCGACCTCATCACCGCGGGAGCGGTGGACGCGTGCAACGCCG
ACGCCAGCTGGATCGGTGGTCCGAGCGAGTGGCGCCGCGTCGCCGCGCTCGCCTCGATGTACGAGGTCGACATGGCACAC
CACGAGGAGCCGCAGATCTCCGCCCACCTCCTGGCGTCGATCCCGCACGGCACCTACCTCGAGACCTTCGACCCCGACCG
CGACCCGATCTTCTGGAACATGATCGCGAACCGGCGTCCCTTCCAGGACGGGGACTACCTGGTGCCGGAGGGACCGGGAT
TCGGCCTCGAGCTGGACTGGGACTACATCGAGCGATACCGCTCGGATCCGGCGTCGTGA

Upstream 100 bases:

>100_bases
GCCGCGAAGGCCTGGCGCAGTACTTCGAGACCAAGGCGATCCACCTGCGACTCGGGCGCTGACCGCGCCCATCCCATCGA
CCTCTCATTGGAGGCAGTAC

Downstream 100 bases:

>100_bases
GCACCGGCGTCGCCGTCGTCGGGGCGGCCGAGGCCGACGACATCGGCGTCGTACCCGGGAAGTCGTCGGTGCAGATGCAC
GCCGAGGCCGCCGCCAACGC

Product: mandelate racemase/muconate lactonizing protein

Products: NA

Alternate protein names: RhamD [H]

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MSTAPAPAVSAVRAASTLSADDLTIERIEVIPMRVPLARLFQGSHYSMSTRCTIVTRLHTRCGLVSEVYNGDTDAEQSVI
VGIIRDEIVPQLIGRSALAHESCWEAMLPPTYDILRDRSVALQAIACLDSAIWDVVGKAVGLPLFQLWGGYRDRLPAICI
GGYYSDDEADIGRQIERYLDLGFAGCKFKVGRLTPAEDAHRTRLARKAAGDDFVLMVDANQGFTRRGAIEFAGLTEDLDL
RWFEEPVGWVNDRLSMRDVRLTTGIQVVAGQSEDTRAGLRDLITAGAVDACNADASWIGGPSEWRRVAALASMYEVDMAH
HEEPQISAHLLASIPHGTYLETFDPDRDPIFWNMIANRRPFQDGDYLVPEGPGFGLELDWDYIERYRSDPAS

Sequences:

>Translated_392_residues
MSTAPAPAVSAVRAASTLSADDLTIERIEVIPMRVPLARLFQGSHYSMSTRCTIVTRLHTRCGLVSEVYNGDTDAEQSVI
VGIIRDEIVPQLIGRSALAHESCWEAMLPPTYDILRDRSVALQAIACLDSAIWDVVGKAVGLPLFQLWGGYRDRLPAICI
GGYYSDDEADIGRQIERYLDLGFAGCKFKVGRLTPAEDAHRTRLARKAAGDDFVLMVDANQGFTRRGAIEFAGLTEDLDL
RWFEEPVGWVNDRLSMRDVRLTTGIQVVAGQSEDTRAGLRDLITAGAVDACNADASWIGGPSEWRRVAALASMYEVDMAH
HEEPQISAHLLASIPHGTYLETFDPDRDPIFWNMIANRRPFQDGDYLVPEGPGFGLELDWDYIERYRSDPAS
>Mature_391_residues
STAPAPAVSAVRAASTLSADDLTIERIEVIPMRVPLARLFQGSHYSMSTRCTIVTRLHTRCGLVSEVYNGDTDAEQSVIV
GIIRDEIVPQLIGRSALAHESCWEAMLPPTYDILRDRSVALQAIACLDSAIWDVVGKAVGLPLFQLWGGYRDRLPAICIG
GYYSDDEADIGRQIERYLDLGFAGCKFKVGRLTPAEDAHRTRLARKAAGDDFVLMVDANQGFTRRGAIEFAGLTEDLDLR
WFEEPVGWVNDRLSMRDVRLTTGIQVVAGQSEDTRAGLRDLITAGAVDACNADASWIGGPSEWRRVAALASMYEVDMAHH
EEPQISAHLLASIPHGTYLETFDPDRDPIFWNMIANRRPFQDGDYLVPEGPGFGLELDWDYIERYRSDPAS

Specific function: Catalyzes the dehydration of L-rhamnonate to 2-keto-3- deoxy-L-rhamnonate (KDR) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mandelate racemase/muconate lactonizing enzyme family. RhamD subfamily [H]

Homologues:

Organism=Escherichia coli, GI226510960, Length=298, Percent_Identity=27.1812080536913, Blast_Score=82, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018110
- InterPro:   IPR013342
- InterPro:   IPR013341
- InterPro:   IPR001354 [H]

Pfam domain/function: PF01188 MR_MLE; PF02746 MR_MLE_N [H]

EC number: =4.2.1.90 [H]

Molecular weight: Translated: 43391; Mature: 43260

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTAPAPAVSAVRAASTLSADDLTIERIEVIPMRVPLARLFQGSHYSMSTRCTIVTRLHT
CCCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHCCCCCCCCCEEEEEEHHHH
RCGLVSEVYNGDTDAEQSVIVGIIRDEIVPQLIGRSALAHESCWEAMLPPTYDILRDRSV
HHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHH
ALQAIACLDSAIWDVVGKAVGLPLFQLWGGYRDRLPAICIGGYYSDDEADIGRQIERYLD
HHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHCCCEEEECCEECCCHHHHHHHHHHHHH
LGFAGCKFKVGRLTPAEDAHRTRLARKAAGDDFVLMVDANQGFTRRGAIEFAGLTEDLDL
CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECCCCCCCCC
RWFEEPVGWVNDRLSMRDVRLTTGIQVVAGQSEDTRAGLRDLITAGAVDACNADASWIGG
HHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
PSEWRRVAALASMYEVDMAHHEEPQISAHLLASIPHGTYLETFDPDRDPIFWNMIANRRP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEECCCCCCCCCEEEEECCCCCC
FQDGDYLVPEGPGFGLELDWDYIERYRSDPAS
CCCCCEECCCCCCCCEEECHHHHHHHHCCCCC
>Mature Secondary Structure 
STAPAPAVSAVRAASTLSADDLTIERIEVIPMRVPLARLFQGSHYSMSTRCTIVTRLHT
CCCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCHHHHHCCCCCCCCCEEEEEEHHHH
RCGLVSEVYNGDTDAEQSVIVGIIRDEIVPQLIGRSALAHESCWEAMLPPTYDILRDRSV
HHHHHHHHHCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCHHH
ALQAIACLDSAIWDVVGKAVGLPLFQLWGGYRDRLPAICIGGYYSDDEADIGRQIERYLD
HHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHCCCEEEECCEECCCHHHHHHHHHHHHH
LGFAGCKFKVGRLTPAEDAHRTRLARKAAGDDFVLMVDANQGFTRRGAIEFAGLTEDLDL
CCCCCCEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEECCCCCCCCC
RWFEEPVGWVNDRLSMRDVRLTTGIQVVAGQSEDTRAGLRDLITAGAVDACNADASWIGG
HHHHHHHHHHHCCCCCCEEEEECCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
PSEWRRVAALASMYEVDMAHHEEPQISAHLLASIPHGTYLETFDPDRDPIFWNMIANRRP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEECCCCCCCCCEEEEECCCCCC
FQDGDYLVPEGPGFGLELDWDYIERYRSDPAS
CCCCCEECCCCCCCCEEECHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA