| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is 119715088
Identifier: 119715088
GI number: 119715088
Start: 882097
End: 882534
Strand: Reverse
Name: 119715088
Synonym: Noca_0843
Alternate gene names: NA
Gene position: 882534-882097 (Counterclockwise)
Preceding gene: 119715089
Following gene: 119715087
Centisome position: 17.7
GC content: 72.37
Gene sequence:
>438_bases ATGAGCACGCCCGCGGACCGCCGGCTCCGGCCGGTGTCCTCCCCGAGCCCGGATGCCGTGCCGTTCTGGGAGGCGGCGAC ACGGCACGCGCTGGTGCTCCCCCACTGCCTGGACTGTGACGAGCCGTTCTTCTACCCCCGCGCCCTGTGCCCCGCCTGCG GCAGCCGGAACCTGGCCTGGGTGACGGCGAGTGGGCGCGGAGTCCTGCACTCGTTCTGCGTGCAGTACCACTGCGACGTA CCGGGTCTCGCCGAGGCCGTCCCGTTCGTCACCGCCCTCGTCGACCTCGCCGAGGGACCGCGGATGATGGGCTTCCTCCT GGACGCCCCGGAAGACCCGGAGGCCATCTCCTGTGACGTCGCGGTGACGGTGGAGTTCGTGGACCTCGACGACGGGCACG CCGCGGTCGGGTTCCGAGCCGTCCCGCGCGAGCCATGA
Upstream 100 bases:
>100_bases AGTGCGACGACCGTCAGGTGCCGGCGGCGGAGGTGGCCCTCGTCAACGGCATGGGCGGCTATCTGTCCAGCTCCGCCACG GCGATCCTGGGCAGGCGCTG
Downstream 100 bases:
>100_bases GCGCGACCAAGCTGCCGACGTGGCTGGTCTCCAGCCCGCACCGGCGTACCCCTCCCGATCCGGCGGACCCGTCCCGCCGC CCGCACGGCACGCACCACGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MSTPADRRLRPVSSPSPDAVPFWEAATRHALVLPHCLDCDEPFFYPRALCPACGSRNLAWVTASGRGVLHSFCVQYHCDV PGLAEAVPFVTALVDLAEGPRMMGFLLDAPEDPEAISCDVAVTVEFVDLDDGHAAVGFRAVPREP
Sequences:
>Translated_145_residues MSTPADRRLRPVSSPSPDAVPFWEAATRHALVLPHCLDCDEPFFYPRALCPACGSRNLAWVTASGRGVLHSFCVQYHCDV PGLAEAVPFVTALVDLAEGPRMMGFLLDAPEDPEAISCDVAVTVEFVDLDDGHAAVGFRAVPREP >Mature_144_residues STPADRRLRPVSSPSPDAVPFWEAATRHALVLPHCLDCDEPFFYPRALCPACGSRNLAWVTASGRGVLHSFCVQYHCDVP GLAEAVPFVTALVDLAEGPRMMGFLLDAPEDPEAISCDVAVTVEFVDLDDGHAAVGFRAVPREP
Specific function: Unknown
COG id: COG1545
COG function: function code R; Predicted nucleic-acid-binding protein containing a Zn-ribbon
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15647; Mature: 15516
Theoretical pI: Translated: 4.47; Mature: 4.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.8 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 4.9 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTPADRRLRPVSSPSPDAVPFWEAATRHALVLPHCLDCDEPFFYPRALCPACGSRNLAW CCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEECCCCCCCCCCCCCHHHHHHCCCCCCEEE VTASGRGVLHSFCVQYHCDVPGLAEAVPFVTALVDLAEGPRMMGFLLDAPEDPEAISCDV EEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEE AVTVEFVDLDDGHAAVGFRAVPREP EEEEEEEECCCCCEEEEEECCCCCC >Mature Secondary Structure STPADRRLRPVSSPSPDAVPFWEAATRHALVLPHCLDCDEPFFYPRALCPACGSRNLAW CCCCCCCCCCCCCCCCCCCCCHHHHCCCEEECCCCCCCCCCCCCHHHHHHCCCCCCEEE VTASGRGVLHSFCVQYHCDVPGLAEAVPFVTALVDLAEGPRMMGFLLDAPEDPEAISCDV EEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEE AVTVEFVDLDDGHAAVGFRAVPREP EEEEEEEECCCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA