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The map label for this gene is nanR [H]

Identifier: 119715086

GI number: 119715086

Start: 881077

End: 881817

Strand: Reverse

Name: nanR [H]

Synonym: Noca_0841

Alternate gene names: 119715086

Gene position: 881817-881077 (Counterclockwise)

Preceding gene: 119715087

Following gene: 119715085

Centisome position: 17.69

GC content: 70.04

Gene sequence:

>741_bases
ATGGCGAAGCCCCCCGCAGCGAAGTCTGCATCCGCTCCGACGACACCGGCGCGCGGCGGGGGAAGGGGCCGGGTCACCGA
GCGCGTCGTCGACGAGATCTGCGCCTATATCGAGCGTGAGGCCCTGCAGGGCGGCGACAAGCTGCCGCCCGAGCGGGTCT
TCATGGAGCTGTTCAGCGTCGGCCGCTCGTCGCTCCGCGAGGCCTTGCGGGTGCTGTCGGCGACCGGCGTCATCGAGGTC
GTCCACGGCGACGGCATGTACGTCGCGGCGGCGAACCCGTCCGTCTCGACCACGACCATCTTCGATGCGACCGAGGAGAG
CGCGCTGCGCAACCTCGTGGAGACCCGGCTCGGGATCGAGCTCGCCATCGTCACCGCGCTCGCCGAGCGTGGCACCGACG
CCGACTTCGACGCCCTCGAGGCGCTGCTGGACGAGCAGCAGGAGCATCTCGAGAACGATCCCTCCTACCAGTGGGAGCCG
CTGGGGTTCGAGCTCACGGCTGCCGGCATGTGTGGCAACTCCTGGCTCTACGACGTCGAGCTGTTGCTGCGCGATGCGTG
GGTCACCCTGTCTCGCGGCACCCGGACCCGCGTCAGCCGGCATCGCGAGTGGCACAGCGAGCATCGCGCGATCCTGGCGA
GCATGCGCACGCGCAACGTCCGGCAGGCCCAGCGCCTGGTGATGGCGCACGTGAGCCTGGAGCGGTTCGAGCAGGACCTG
AGTCGCGCTCGCAAGCGCTAG

Upstream 100 bases:

>100_bases
GCCGACGTCCGCAGCTGCTGCCCGGCCTGCCTGGCCGTGGTGCGCACGACCTGACCGGGGTTTGCCAAAGCCGGAGACCC
GCTCCTACTGTCGGGTTGCC

Downstream 100 bases:

>100_bases
TGGCCGGTCGGGGCCGTGCGATACTCACCGGCGTGGAGCAGGCGGACCGCCCGGCGCCGACGTCGGCCGAGGAGCTGGTG
GCCTTCGAGGTCGCGACCCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MAKPPAAKSASAPTTPARGGGRGRVTERVVDEICAYIEREALQGGDKLPPERVFMELFSVGRSSLREALRVLSATGVIEV
VHGDGMYVAAANPSVSTTTIFDATEESALRNLVETRLGIELAIVTALAERGTDADFDALEALLDEQQEHLENDPSYQWEP
LGFELTAAGMCGNSWLYDVELLLRDAWVTLSRGTRTRVSRHREWHSEHRAILASMRTRNVRQAQRLVMAHVSLERFEQDL
SRARKR

Sequences:

>Translated_246_residues
MAKPPAAKSASAPTTPARGGGRGRVTERVVDEICAYIEREALQGGDKLPPERVFMELFSVGRSSLREALRVLSATGVIEV
VHGDGMYVAAANPSVSTTTIFDATEESALRNLVETRLGIELAIVTALAERGTDADFDALEALLDEQQEHLENDPSYQWEP
LGFELTAAGMCGNSWLYDVELLLRDAWVTLSRGTRTRVSRHREWHSEHRAILASMRTRNVRQAQRLVMAHVSLERFEQDL
SRARKR
>Mature_245_residues
AKPPAAKSASAPTTPARGGGRGRVTERVVDEICAYIEREALQGGDKLPPERVFMELFSVGRSSLREALRVLSATGVIEVV
HGDGMYVAAANPSVSTTTIFDATEESALRNLVETRLGIELAIVTALAERGTDADFDALEALLDEQQEHLENDPSYQWEPL
GFELTAAGMCGNSWLYDVELLLRDAWVTLSRGTRTRVSRHREWHSEHRAILASMRTRNVRQAQRLVMAHVSLERFEQDLS
RARKR

Specific function: Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization [H]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789621, Length=227, Percent_Identity=26.8722466960352, Blast_Score=77, Evalue=9e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27356; Mature: 27225

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPPAAKSASAPTTPARGGGRGRVTERVVDEICAYIEREALQGGDKLPPERVFMELFSV
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GRSSLREALRVLSATGVIEVVHGDGMYVAAANPSVSTTTIFDATEESALRNLVETRLGIE
HHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH
LAIVTALAERGTDADFDALEALLDEQQEHLENDPSYQWEPLGFELTAAGMCGNSWLYDVE
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHH
LLLRDAWVTLSRGTRTRVSRHREWHSEHRAILASMRTRNVRQAQRLVMAHVSLERFEQDL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRARKR
HHHHCC
>Mature Secondary Structure 
AKPPAAKSASAPTTPARGGGRGRVTERVVDEICAYIEREALQGGDKLPPERVFMELFSV
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
GRSSLREALRVLSATGVIEVVHGDGMYVAAANPSVSTTTIFDATEESALRNLVETRLGIE
HHHHHHHHHHHHHHCCEEEEEECCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHH
LAIVTALAERGTDADFDALEALLDEQQEHLENDPSYQWEPLGFELTAAGMCGNSWLYDVE
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCHHHHHH
LLLRDAWVTLSRGTRTRVSRHREWHSEHRAILASMRTRNVRQAQRLVMAHVSLERFEQDL
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRARKR
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA