| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
Click here to switch to the map view.
The map label for this gene is fur [H]
Identifier: 119715084
GI number: 119715084
Start: 880002
End: 880433
Strand: Reverse
Name: fur [H]
Synonym: Noca_0839
Alternate gene names: 119715084
Gene position: 880433-880002 (Counterclockwise)
Preceding gene: 119715085
Following gene: 119715083
Centisome position: 17.66
GC content: 74.54
Gene sequence:
>432_bases ATGGCACCTGCCGAGGAGGACCTACGGGCCGCCGGCCTGCGCGTGACCCGCCCGCGGGTCGCCGTACTCGCCGAGGTGTC CGAGCACCCGCACGCGGACGTCGACACGATCGCGACCGCGGCCCGGGCCCGGCTCGGCAAGGTGTCGACCCAGGCCGTCT ACGACGTCGTGCACGCGCTCACCGACGCAGGCCTCCTGCGGCGCTTCCAGCCGGCGGGGTCGCCGGCCCGGTTCGAGCTG GCGACCGGCGACAACCATCACCACCTCGTCTGCCGCGCCTGCCATCGGATCGTCGACGTCGCCTGCGCCACCGGCGAGGC GCCCTGCCTCCAGGCGAGCGACGACGCCGGCTACCTGCTCGACGAGGCCGAGGTCACCTACTGGGGCCTGTGCGCGAACT GCCAGGCCGCGGGCGAGCTCGAGCTCCTCTGA
Upstream 100 bases:
>100_bases GGGCGAGGTCGGAACCTTCCCTTGCGTACGGCAAGTCTTGCGTTAGGCAAGTCTCTGGGCCAAGATGGACTTGATCCGTT CCAGACCAGGGGGTCAGCGC
Downstream 100 bases:
>100_bases CCACCGAAGCTCCACCCATCGAGTCGAGAGAGATGAGACCCATGACCACCACGGCACCCGCCCCCACCATCGACGCCTCC GCCACCGACCCCCGCGCCCG
Product: ferric-uptake regulator
Products: NA
Alternate protein names: Ferric uptake regulator [H]
Number of amino acids: Translated: 143; Mature: 142
Protein sequence:
>143_residues MAPAEEDLRAAGLRVTRPRVAVLAEVSEHPHADVDTIATAARARLGKVSTQAVYDVVHALTDAGLLRRFQPAGSPARFEL ATGDNHHHLVCRACHRIVDVACATGEAPCLQASDDAGYLLDEAEVTYWGLCANCQAAGELELL
Sequences:
>Translated_143_residues MAPAEEDLRAAGLRVTRPRVAVLAEVSEHPHADVDTIATAARARLGKVSTQAVYDVVHALTDAGLLRRFQPAGSPARFEL ATGDNHHHLVCRACHRIVDVACATGEAPCLQASDDAGYLLDEAEVTYWGLCANCQAAGELELL >Mature_142_residues APAEEDLRAAGLRVTRPRVAVLAEVSEHPHADVDTIATAARARLGKVSTQAVYDVVHALTDAGLLRRFQPAGSPARFELA TGDNHHHLVCRACHRIVDVACATGEAPCLQASDDAGYLLDEAEVTYWGLCANCQAAGELELL
Specific function: Acts as a global negative controlling element, employing Fe(2+) as a cofactor to bind the operator of the repressed genes [H]
COG id: COG0735
COG function: function code P; Fe2+/Zn2+ uptake regulation proteins
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Fur family [H]
Homologues:
None
Paralogues:
None
Copy number: 3432 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002481 [H]
Pfam domain/function: PF01475 FUR [H]
EC number: NA
Molecular weight: Translated: 15225; Mature: 15094
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.2 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 4.2 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPAEEDLRAAGLRVTRPRVAVLAEVSEHPHADVDTIATAARARLGKVSTQAVYDVVHAL CCCCHHHHHHCCEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH TDAGLLRRFQPAGSPARFELATGDNHHHLVCRACHRIVDVACATGEAPCLQASDDAGYLL HHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEE DEAEVTYWGLCANCQAAGELELL CCCCEEEEEEECCCCCCCCEECC >Mature Secondary Structure APAEEDLRAAGLRVTRPRVAVLAEVSEHPHADVDTIATAARARLGKVSTQAVYDVVHAL CCCHHHHHHCCEEECCCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH TDAGLLRRFQPAGSPARFELATGDNHHHLVCRACHRIVDVACATGEAPCLQASDDAGYLL HHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCCCEEE DEAEVTYWGLCANCQAAGELELL CCCCEEEEEEECCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12788972 [H]