Click here to switch to the map view.

The map label for this gene is fliF [H]

Identifier: 119715006

GI number: 119715006

Start: 804977

End: 806572

Strand: Reverse

Name: fliF [H]

Synonym: Noca_0759

Alternate gene names: 119715006

Gene position: 806572-804977 (Counterclockwise)

Preceding gene: 119715007

Following gene: 119715005

Centisome position: 16.18

GC content: 70.05

Gene sequence:

>1596_bases
ATGAAGCAGAAGCTGAACCGCAGCCTCGCCAACCTGCGGACCACGTTCACCTCGTTCACCCTCGGCCAGCAGGTCGTGTC
CGTGATCGGTACGGCGGCGATCCTGCTCGCCGCGTTCATGGTCTTCCGGTGGGTGTCCACCCCGGACTACGCACCGCTCT
ACAGCAACCTGGCCGCGTCGGACGCCTCGGCGATCGTCGACGAGCTCGACTCGCAGGGCACGCCGTACAAGCTGGCCAAT
GGCGGCTCGACCGTGATGGTGCCGCGCGACTCCGTGTACGCGACCCGGATCTCGCTCAGCGGCCAGGGCCTCCCCGAGCA
GAGCAGCGGCCAGGGCTACTCCCTGCTGGACAACCAGGACATCTCGACCTCGGAGTTCCAGGAGCAGACCGACTTCAAGC
GCGCGATGGAGGGCGAGCTCGCCTCGACCATCGAGGCGGTCGACGGCGTCACCACCGCCGTCGTCCACCTGGCGCTGCCG
CCGGCCAAGGTGTTCAGCGACCAGCAGGACCCGCCGACCGCCTCGGTGCTCATCGACACCGCTGCCGGGACCACGTTCAA
CGCCGAGCAGGTCCAGGCGATCGTGCACCTGGTCGCCTCGAGCATCGACGGTCTCGACCCCGACAACGTGACGGTCGCGG
ACTCCTCCGGCAAGGTGCTCTCCTCCAGCGACGCCGGCGCCCTGGGTGCCAGCACGCGCGACCAGCAGGTCACGAGCTTC
CAGCAGCAGACCAGCCAGCGGATCCAGAGCATGCTCGACCGGGTCCTCGGCCCGGGCAACTCGACCGTCCAGGTGACCGC
AGACCTCGACTTCGACAAGTCGGTCTCCGAGTCGACGACCTACGGCAAGAGCAACAAGGTGCCGGCCCTGTCGTCGAGCA
CGAGCACCGAGAAGTACGACGGTCCGGCCGGCGGCTCCAGCAGCAGCGGCGTGGTCGGCCCCGACGGGCAGATGGACAGC
TTCGGCGCGACCGGCGCCGGCGGCAAGTCGTCCTACGTCAAGGAGTCGACGACCTCGGACAACGCGGTCGAGAAGACCAT
CGAGCACCGCGAGACGGCGCCCGGCAGCATCAACACCCTCCACGTGGGCGTGGTGCTCGACACCACCGCCGCGCAGACCG
TGAACCCCACCGACGTGCAAGACCTGATCGCGGCCACCGTCGGCATCAACCCCGACCGCGGCGACACGGTGCAGGTCACG
ACGATGCCGTTCGACCGGACCGCCGACAAGGCCGCCGCCGCGGAGCTCGCCGCCGCGACGAAGGCCGCCAAGACCCAGCG
GATGTGGGACCTCGCCCGCAACGCCGGCATCGCGGTCGCGATCCTCGCGGTCCTGCTGATCGCCTGGCTGCGCTCGCGCA
AGAAGTCGAAGCGTCGCGAGAAGACCACGACCTACCTCGTCGAGCAGCTGCGCAACGACGCGGCCGAGCGCCAGGCCGCG
GCCGCGGTCGCGATCCAGAACAGCCCCGCCCTCGAAGCCCTCGAGAGCGCCGACCGCGCCGGCGACGAGATGCGGCGTGA
GCTCGCCGATCTCGCCGACGGCCAGCCCGAGGACGTCGCCGCCCTGCTGCGCGGCTGGCTGGTGGAGCGTCCCTGA

Upstream 100 bases:

>100_bases
ACCGAGGCCTCGGTCACCACCCAGCTGACCGTCGCCGTGCGCAACCGCGCGCTCGAGGCGTTCAACGAGATCATGCGGAT
GCCGATCGGATGACGCACTG

Downstream 100 bases:

>100_bases
TGGCGATGAACACGATGAACCTGACGGCCGCCGGCGTGCGCAAGGCCGCGGTCGTCCTGATCCAGCTCGGCAAGGACCAC
GCCGCGTCCGTGCTCAGCCA

Product: flagellar M-ring protein FliF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 531; Mature: 531

Protein sequence:

>531_residues
MKQKLNRSLANLRTTFTSFTLGQQVVSVIGTAAILLAAFMVFRWVSTPDYAPLYSNLAASDASAIVDELDSQGTPYKLAN
GGSTVMVPRDSVYATRISLSGQGLPEQSSGQGYSLLDNQDISTSEFQEQTDFKRAMEGELASTIEAVDGVTTAVVHLALP
PAKVFSDQQDPPTASVLIDTAAGTTFNAEQVQAIVHLVASSIDGLDPDNVTVADSSGKVLSSSDAGALGASTRDQQVTSF
QQQTSQRIQSMLDRVLGPGNSTVQVTADLDFDKSVSESTTYGKSNKVPALSSSTSTEKYDGPAGGSSSSGVVGPDGQMDS
FGATGAGGKSSYVKESTTSDNAVEKTIEHRETAPGSINTLHVGVVLDTTAAQTVNPTDVQDLIAATVGINPDRGDTVQVT
TMPFDRTADKAAAAELAAATKAAKTQRMWDLARNAGIAVAILAVLLIAWLRSRKKSKRREKTTTYLVEQLRNDAAERQAA
AAVAIQNSPALEALESADRAGDEMRRELADLADGQPEDVAALLRGWLVERP

Sequences:

>Translated_531_residues
MKQKLNRSLANLRTTFTSFTLGQQVVSVIGTAAILLAAFMVFRWVSTPDYAPLYSNLAASDASAIVDELDSQGTPYKLAN
GGSTVMVPRDSVYATRISLSGQGLPEQSSGQGYSLLDNQDISTSEFQEQTDFKRAMEGELASTIEAVDGVTTAVVHLALP
PAKVFSDQQDPPTASVLIDTAAGTTFNAEQVQAIVHLVASSIDGLDPDNVTVADSSGKVLSSSDAGALGASTRDQQVTSF
QQQTSQRIQSMLDRVLGPGNSTVQVTADLDFDKSVSESTTYGKSNKVPALSSSTSTEKYDGPAGGSSSSGVVGPDGQMDS
FGATGAGGKSSYVKESTTSDNAVEKTIEHRETAPGSINTLHVGVVLDTTAAQTVNPTDVQDLIAATVGINPDRGDTVQVT
TMPFDRTADKAAAAELAAATKAAKTQRMWDLARNAGIAVAILAVLLIAWLRSRKKSKRREKTTTYLVEQLRNDAAERQAA
AAVAIQNSPALEALESADRAGDEMRRELADLADGQPEDVAALLRGWLVERP
>Mature_531_residues
MKQKLNRSLANLRTTFTSFTLGQQVVSVIGTAAILLAAFMVFRWVSTPDYAPLYSNLAASDASAIVDELDSQGTPYKLAN
GGSTVMVPRDSVYATRISLSGQGLPEQSSGQGYSLLDNQDISTSEFQEQTDFKRAMEGELASTIEAVDGVTTAVVHLALP
PAKVFSDQQDPPTASVLIDTAAGTTFNAEQVQAIVHLVASSIDGLDPDNVTVADSSGKVLSSSDAGALGASTRDQQVTSF
QQQTSQRIQSMLDRVLGPGNSTVQVTADLDFDKSVSESTTYGKSNKVPALSSSTSTEKYDGPAGGSSSSGVVGPDGQMDS
FGATGAGGKSSYVKESTTSDNAVEKTIEHRETAPGSINTLHVGVVLDTTAAQTVNPTDVQDLIAATVGINPDRGDTVQVT
TMPFDRTADKAAAAELAAATKAAKTQRMWDLARNAGIAVAILAVLLIAWLRSRKKSKRREKTTTYLVEQLRNDAAERQAA
AAVAIQNSPALEALESADRAGDEMRRELADLADGQPEDVAALLRGWLVERP

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=536, Percent_Identity=29.1044776119403, Blast_Score=199, Evalue=4e-52,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 55853; Mature: 55853

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQKLNRSLANLRTTFTSFTLGQQVVSVIGTAAILLAAFMVFRWVSTPDYAPLYSNLAAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
DASAIVDELDSQGTPYKLANGGSTVMVPRDSVYATRISLSGQGLPEQSSGQGYSLLDNQD
HHHHHHHHHCCCCCCEEEECCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCEECCCCC
ISTSEFQEQTDFKRAMEGELASTIEAVDGVTTAVVHLALPPAKVFSDQQDPPTASVLIDT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEC
AAGTTFNAEQVQAIVHLVASSIDGLDPDNVTVADSSGKVLSSSDAGALGASTRDQQVTSF
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHHHH
QQQTSQRIQSMLDRVLGPGNSTVQVTADLDFDKSVSESTTYGKSNKVPALSSSTSTEKYD
HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
GPAGGSSSSGVVGPDGQMDSFGATGAGGKSSYVKESTTSDNAVEKTIEHRETAPGSINTL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE
HVGVVLDTTAAQTVNPTDVQDLIAATVGINPDRGDTVQVTTMPFDRTADKAAAAELAAAT
EEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
KAAKTQRMWDLARNAGIAVAILAVLLIAWLRSRKKSKRREKTTTYLVEQLRNDAAERQAA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVAIQNSPALEALESADRAGDEMRRELADLADGQPEDVAALLRGWLVERP
HHEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKQKLNRSLANLRTTFTSFTLGQQVVSVIGTAAILLAAFMVFRWVSTPDYAPLYSNLAAS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
DASAIVDELDSQGTPYKLANGGSTVMVPRDSVYATRISLSGQGLPEQSSGQGYSLLDNQD
HHHHHHHHHCCCCCCEEEECCCCEEEEECCCEEEEEEEECCCCCCCCCCCCCCEECCCCC
ISTSEFQEQTDFKRAMEGELASTIEAVDGVTTAVVHLALPPAKVFSDQQDPPTASVLIDT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCEEEEEC
AAGTTFNAEQVQAIVHLVASSIDGLDPDNVTVADSSGKVLSSSDAGALGASTRDQQVTSF
CCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHHHH
QQQTSQRIQSMLDRVLGPGNSTVQVTADLDFDKSVSESTTYGKSNKVPALSSSTSTEKYD
HHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
GPAGGSSSSGVVGPDGQMDSFGATGAGGKSSYVKESTTSDNAVEKTIEHRETAPGSINTL
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEE
HVGVVLDTTAAQTVNPTDVQDLIAATVGINPDRGDTVQVTTMPFDRTADKAAAAELAAAT
EEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
KAAKTQRMWDLARNAGIAVAILAVLLIAWLRSRKKSKRREKTTTYLVEQLRNDAAERQAA
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVAIQNSPALEALESADRAGDEMRRELADLADGQPEDVAALLRGWLVERP
HHEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2544561; 11677609; 1551848 [H]