| Definition | Nocardioides sp. JS614 chromosome, complete genome. |
|---|---|
| Accession | NC_008699 |
| Length | 4,985,871 |
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The map label for this gene is sphX [H]
Identifier: 119714964
GI number: 119714964
Start: 761191
End: 762633
Strand: Reverse
Name: sphX [H]
Synonym: Noca_0717
Alternate gene names: 119714964
Gene position: 762633-761191 (Counterclockwise)
Preceding gene: 119714965
Following gene: 119714963
Centisome position: 15.3
GC content: 71.1
Gene sequence:
>1443_bases GTGACACGCACCCGCTCGAAGCTGCTCGGCTCCCTGGCGGTGGCCGCGGTCTCGCTGGGCCTGCTCACGGCCTGCTCGGA CCCGTCGCAGGAGGCCACCGACTCGGTCAGCCAGGACCAGGCCAACGAGTTCCGCGAGAACCAGCTGCGGCAGAAGGACA TCGACAAGGCGTACGCCGCGCTGCCGACCCGGCCCTCCGGCGTCGTCGGCATCGACGGCTCGACGACGGGGTCGCTGACC CCGACCGAGGTCAGGAGCTACGAGGCCACCGCGAACGCGGCCCAGGTCAACGTCGCGGACAACGGCGAGGACCAGGCCTT CCAGGAGCTGTGTGCGGGCCAGATCGACCTCGTGGACTCGGCCCGTCCGATCAGCCGTGCCGAGTGGGAGGCCTGTCAGG CCGTCGGCCTCGACGTGGTGCAGTTCCAGGTCGCTGCGGAGGCGATCGTGATCGCGATCAAGTCGGAGACCGACGTCGGC GCCGACTGCCTCACCGTCGACCAGGTCCGGGACATCTACCGGGCCGGGTCGCCGCTGACGAACTGGAGCCAGCCGCCGCT CGGCTTCGACGACGTGCCGCTGAAGGTGGGCGGACCGAGCCCCGACAACAACGGCTTCGGCTTCTTCGGCCGCTACGTGC TCGGCGCGCCCGAGCCCTCCCAGGTCGACCTGCGCTCCGACTACTTCCTGGCCGAGAACGACGAGGCGGCTCGCAAGTTC GTGGTCGGCAAGCGGAACATCGAGCTGCGGGCGGCGCGCTTCGACGACGTCAGCCGTCGCCGCGCCCAGGCCAACCAGGC GCTCCAGGACGCACGCAGCGAGATGATCGCCGCCCGGGAGGAGCTCGCGGTCGCGCTCGCCGAGCGAGCCAAGGGCATTC GGGACGGCCGACCGGAGGCGGACAAGGCCAGGGACCAACGGCGGGTCGACAAGGCGTTCGAGCGCCGGACCGCGGCCCGG ACGCGCCTGGACGCTGCCCAGCAGCGCTACGCCGCCGTCAACGAGGTCTACCGCAACACCGACGAGGCCCGGCGTCTCTA CCAGGCCTACCACGGCCACGTGGCCTACTTCCGGTTCAGCTACTACGAACTGTTCGAGGACCAGCTGCGGCCCTTCGAGA TCACCCTGCCCGACGGCCGGCGCAACTGCATCTTCCCGAGCCAGCGGACGATCACCAGCGGTGAGTACCCGCTCGCCCGG CAGCTGCTGATCACCACCACGACCCGCTCCCTGGCCCGCGCCGAGGTCCGGGACTTCCTCAGCCACTACGTGGCGCACGC CCAGGCCGGGGCGGACACCGCCCGTCTGGTCGCGCTGCCCGACGAGACGGTGCGGCTCCAGCAGTCCTGGCTCACCGGGG ACCAGGCGCCGCAGCTCTACGTGCCCGACGACAACGCGAGCACGCCGATCCAGCCGGTGCAGAGCGAGAAGCCTGCGCGA TGA
Upstream 100 bases:
>100_bases GGTACCACTACCCGCCGGAGGAGGACGAGACCGTCGTCGTGCCGAGCGAGAGCCCGACCGTCCCCCCCTCCAGCTCGCCG ACCGAGGGAGGTGCGGTCCA
Downstream 100 bases:
>100_bases CCACCCGGGCCACCCGACTCGTGGCGCTCGCGGTGCCACTGCTCCTCGCGCTGCCCGCCCTCGCCGTGGCCCCGACCTAC GCCGGCGGTACCGCGGCGAG
Product: phosphate ABC transporter periplasmic component-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 480; Mature: 479
Protein sequence:
>480_residues MTRTRSKLLGSLAVAAVSLGLLTACSDPSQEATDSVSQDQANEFRENQLRQKDIDKAYAALPTRPSGVVGIDGSTTGSLT PTEVRSYEATANAAQVNVADNGEDQAFQELCAGQIDLVDSARPISRAEWEACQAVGLDVVQFQVAAEAIVIAIKSETDVG ADCLTVDQVRDIYRAGSPLTNWSQPPLGFDDVPLKVGGPSPDNNGFGFFGRYVLGAPEPSQVDLRSDYFLAENDEAARKF VVGKRNIELRAARFDDVSRRRAQANQALQDARSEMIAAREELAVALAERAKGIRDGRPEADKARDQRRVDKAFERRTAAR TRLDAAQQRYAAVNEVYRNTDEARRLYQAYHGHVAYFRFSYYELFEDQLRPFEITLPDGRRNCIFPSQRTITSGEYPLAR QLLITTTTRSLARAEVRDFLSHYVAHAQAGADTARLVALPDETVRLQQSWLTGDQAPQLYVPDDNASTPIQPVQSEKPAR
Sequences:
>Translated_480_residues MTRTRSKLLGSLAVAAVSLGLLTACSDPSQEATDSVSQDQANEFRENQLRQKDIDKAYAALPTRPSGVVGIDGSTTGSLT PTEVRSYEATANAAQVNVADNGEDQAFQELCAGQIDLVDSARPISRAEWEACQAVGLDVVQFQVAAEAIVIAIKSETDVG ADCLTVDQVRDIYRAGSPLTNWSQPPLGFDDVPLKVGGPSPDNNGFGFFGRYVLGAPEPSQVDLRSDYFLAENDEAARKF VVGKRNIELRAARFDDVSRRRAQANQALQDARSEMIAAREELAVALAERAKGIRDGRPEADKARDQRRVDKAFERRTAAR TRLDAAQQRYAAVNEVYRNTDEARRLYQAYHGHVAYFRFSYYELFEDQLRPFEITLPDGRRNCIFPSQRTITSGEYPLAR QLLITTTTRSLARAEVRDFLSHYVAHAQAGADTARLVALPDETVRLQQSWLTGDQAPQLYVPDDNASTPIQPVQSEKPAR >Mature_479_residues TRTRSKLLGSLAVAAVSLGLLTACSDPSQEATDSVSQDQANEFRENQLRQKDIDKAYAALPTRPSGVVGIDGSTTGSLTP TEVRSYEATANAAQVNVADNGEDQAFQELCAGQIDLVDSARPISRAEWEACQAVGLDVVQFQVAAEAIVIAIKSETDVGA DCLTVDQVRDIYRAGSPLTNWSQPPLGFDDVPLKVGGPSPDNNGFGFFGRYVLGAPEPSQVDLRSDYFLAENDEAARKFV VGKRNIELRAARFDDVSRRRAQANQALQDARSEMIAAREELAVALAERAKGIRDGRPEADKARDQRRVDKAFERRTAART RLDAAQQRYAAVNEVYRNTDEARRLYQAYHGHVAYFRFSYYELFEDQLRPFEITLPDGRRNCIFPSQRTITSGEYPLARQ LLITTTTRSLARAEVRDFLSHYVAHAQAGADTARLVALPDETVRLQQSWLTGDQAPQLYVPDDNASTPIQPVQSEKPAR
Specific function: May be involved in the system for phosphate transport across the cytoplasmic membrane [H]
COG id: COG0226
COG function: function code P; ABC-type phosphate transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the pstS family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011862 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53003; Mature: 52872
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 0.4 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 0.2 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTRSKLLGSLAVAAVSLGLLTACSDPSQEATDSVSQDQANEFRENQLRQKDIDKAYAA CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPTRPSGVVGIDGSTTGSLTPTEVRSYEATANAAQVNVADNGEDQAFQELCAGQIDLVDS CCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEECCC ARPISRAEWEACQAVGLDVVQFQVAAEAIVIAIKSETDVGADCLTVDQVRDIYRAGSPLT CCCCCHHHHHHHHHHCCHHHHHHHHHCEEEEEEECCCCCCCCCEEHHHHHHHHHCCCCCC NWSQPPLGFDDVPLKVGGPSPDNNGFGFFGRYVLGAPEPSQVDLRSDYFLAENDEAARKF CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHEEECCCCCCCEECCCCEEEECCCHHHHHH VVGKRNIELRAARFDDVSRRRAQANQALQDARSEMIAAREELAVALAERAKGIRDGRPEA HCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH DKARDQRRVDKAFERRTAARTRLDAAQQRYAAVNEVYRNTDEARRLYQAYHGHVAYFRFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEHH YYELFEDQLRPFEITLPDGRRNCIFPSQRTITSGEYPLARQLLITTTTRSLARAEVRDFL HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHEEEHHHHHHHHHHHHHHH SHYVAHAQAGADTARLVALPDETVRLQQSWLTGDQAPQLYVPDDNASTPIQPVQSEKPAR HHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TRTRSKLLGSLAVAAVSLGLLTACSDPSQEATDSVSQDQANEFRENQLRQKDIDKAYAA CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LPTRPSGVVGIDGSTTGSLTPTEVRSYEATANAAQVNVADNGEDQAFQELCAGQIDLVDS CCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEECCC ARPISRAEWEACQAVGLDVVQFQVAAEAIVIAIKSETDVGADCLTVDQVRDIYRAGSPLT CCCCCHHHHHHHHHHCCHHHHHHHHHCEEEEEEECCCCCCCCCEEHHHHHHHHHCCCCCC NWSQPPLGFDDVPLKVGGPSPDNNGFGFFGRYVLGAPEPSQVDLRSDYFLAENDEAARKF CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHEEECCCCCCCEECCCCEEEECCCHHHHHH VVGKRNIELRAARFDDVSRRRAQANQALQDARSEMIAAREELAVALAERAKGIRDGRPEA HCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH DKARDQRRVDKAFERRTAARTRLDAAQQRYAAVNEVYRNTDEARRLYQAYHGHVAYFRFS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCEEEEEHH YYELFEDQLRPFEITLPDGRRNCIFPSQRTITSGEYPLARQLLITTTTRSLARAEVRDFL HHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHEEEHHHHHHHHHHHHHHH SHYVAHAQAGADTARLVALPDETVRLQQSWLTGDQAPQLYVPDDNASTPIQPVQSEKPAR HHHHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]