| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
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The map label for this gene is bglIIM [H]
Identifier: 119386545
GI number: 119386545
Start: 972636
End: 973571
Strand: Direct
Name: bglIIM [H]
Synonym: Pden_3838
Alternate gene names: 119386545
Gene position: 972636-973571 (Clockwise)
Preceding gene: 119386544
Following gene: 119386546
Centisome position: 56.22
GC content: 53.21
Gene sequence:
>936_bases ATGCCGCACCTTTCCTGTGGCCTCAAGAATCACCGGAACAAAGACATGTCCCCGAAACAAGCCTTGGCTCTTCTCCGCTC TGACCACGACGATGGTGCCACGGTTCATCGCTTGGAGCGAGACGCGAAAGCCGAGATCGCTTGCGAGCACAATCTCAAGT TCATGCGTCGTTTGCCTGACGAATCCATGAGCCTGATCGTGACGTCACCGCCCTACAACATTGGAAAGTCTTATGAAAAG CGCACATCGCAAGAAAAATATGTTGAGGATCAGGCGGCGTGCATTGCCGAAGCCGTACGTCTGCTCGCGCCAAACGGGTC CATCTGCTGGCAGGTTGGCAACCACGTTGACTCAGGCGAGATATTCCCGCTAGACATCCTTCTCTACCCGCTCTTTAAGC ACCACGGCCTGCAACTCCGCAATCGAATTGTTTGGACGTTCGGTCATGGGCTGCACTGCCAGAAGCGCTTTTCGGGTAGG CATGAAACGATTCTATGGTTCACCAAATCTGAGGACTACACGTTCAACCTAGATCCTGTCCGCGTCCCCTCGAAGTATCC GAACAAAAAGCACTTCAAAGGTCCGAACAAGGGCGAGCTTTCCAGCAATCCTCTTGGAAAGAACCCTTCCGATGTTTGGG ATATTCCCAATGTCAAATCCAACCACGTTGAAAAGACCGATCATCCTTGCCAGTTCCCCATCGGACTGGTGGAGAGATTG GTGTTGGCTTTGACAAACGAAGGCGAGAGCGTCCTCGATCCTTATCTTGGCGTTGGTTCGTCCGCGATTGCAGCGTTGAA GCATGGAAGACATGCCTACGGCTGCGATCTCGATAAAGCCTATGTCGATATTGCATGGGATCGTATTCACCAGCTGCGCG CAGGTACGCTCCGCACCCGCCCGATGAACAAACCCGTCTATGACCCCAATGCTTAG
Upstream 100 bases:
>100_bases GTACGAGAGACACCTCTCGGGTGTCGCGTATCTGCAAGATGCGGGGTTGTCTTTATCGTCTGACACCAGATATCGTGTGA GATACCGCCTGTTTGTCGTC
Downstream 100 bases:
>100_bases TAGTGTCCATGAAGCTCGCATATACCTACGAAGATCACCACAGCGCGGGTGCCGAATGGGATCGGCGTGACCTGAAAGAA TGGCTCACGGACGTTTTTGA
Product: DNA methylase N-4/N-6 domain-containing protein
Products: NA
Alternate protein names: M.BglII; N(4)- cytosine-specific methyltransferase BglII [H]
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MPHLSCGLKNHRNKDMSPKQALALLRSDHDDGATVHRLERDAKAEIACEHNLKFMRRLPDESMSLIVTSPPYNIGKSYEK RTSQEKYVEDQAACIAEAVRLLAPNGSICWQVGNHVDSGEIFPLDILLYPLFKHHGLQLRNRIVWTFGHGLHCQKRFSGR HETILWFTKSEDYTFNLDPVRVPSKYPNKKHFKGPNKGELSSNPLGKNPSDVWDIPNVKSNHVEKTDHPCQFPIGLVERL VLALTNEGESVLDPYLGVGSSAIAALKHGRHAYGCDLDKAYVDIAWDRIHQLRAGTLRTRPMNKPVYDPNA
Sequences:
>Translated_311_residues MPHLSCGLKNHRNKDMSPKQALALLRSDHDDGATVHRLERDAKAEIACEHNLKFMRRLPDESMSLIVTSPPYNIGKSYEK RTSQEKYVEDQAACIAEAVRLLAPNGSICWQVGNHVDSGEIFPLDILLYPLFKHHGLQLRNRIVWTFGHGLHCQKRFSGR HETILWFTKSEDYTFNLDPVRVPSKYPNKKHFKGPNKGELSSNPLGKNPSDVWDIPNVKSNHVEKTDHPCQFPIGLVERL VLALTNEGESVLDPYLGVGSSAIAALKHGRHAYGCDLDKAYVDIAWDRIHQLRAGTLRTRPMNKPVYDPNA >Mature_310_residues PHLSCGLKNHRNKDMSPKQALALLRSDHDDGATVHRLERDAKAEIACEHNLKFMRRLPDESMSLIVTSPPYNIGKSYEKR TSQEKYVEDQAACIAEAVRLLAPNGSICWQVGNHVDSGEIFPLDILLYPLFKHHGLQLRNRIVWTFGHGLHCQKRFSGRH ETILWFTKSEDYTFNLDPVRVPSKYPNKKHFKGPNKGELSSNPLGKNPSDVWDIPNVKSNHVEKTDHPCQFPIGLVERLV LALTNEGESVLDPYLGVGSSAIAALKHGRHAYGCDLDKAYVDIAWDRIHQLRAGTLRTRPMNKPVYDPNA
Specific function: This methylase recognizes the double-stranded sequence AGATCT, causes specific methylation on C-5 on both strands, and protects the DNA from cleavage by the BglII endonuclease [H]
COG id: COG0863
COG function: function code L; DNA modification methylase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family. N(4) subfamily [H]
Homologues:
Organism=Escherichia coli, GI87082238, Length=241, Percent_Identity=29.8755186721992, Blast_Score=114, Evalue=7e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002941 - InterPro: IPR017985 - InterPro: IPR001091 [H]
Pfam domain/function: PF01555 N6_N4_Mtase [H]
EC number: =2.1.1.113 [H]
Molecular weight: Translated: 35180; Mature: 35049
Theoretical pI: Translated: 8.65; Mature: 8.65
Prosite motif: PS00093 N4_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPHLSCGLKNHRNKDMSPKQALALLRSDHDDGATVHRLERDAKAEIACEHNLKFMRRLPD CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCHHEEEHHHHHHHHHHCCC ESMSLIVTSPPYNIGKSYEKRTSQEKYVEDQAACIAEAVRLLAPNGSICWQVGNHVDSGE CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC IFPLDILLYPLFKHHGLQLRNRIVWTFGHGLHCQKRFSGRHETILWFTKSEDYTFNLDPV EEEHHHHHHHHHHHCCCEECCEEEEEECCCCCHHHHHCCCCCEEEEEECCCCEEECCCCE RVPSKYPNKKHFKGPNKGELSSNPLGKNPSDVWDIPNVKSNHVEKTDHPCQFPIGLVERL ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH VLALTNEGESVLDPYLGVGSSAIAALKHGRHAYGCDLDKAYVDIAWDRIHQLRAGTLRTR HHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC PMNKPVYDPNA CCCCCCCCCCC >Mature Secondary Structure PHLSCGLKNHRNKDMSPKQALALLRSDHDDGATVHRLERDAKAEIACEHNLKFMRRLPD CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHCCHHEEEHHHHHHHHHHCCC ESMSLIVTSPPYNIGKSYEKRTSQEKYVEDQAACIAEAVRLLAPNGSICWQVGNHVDSGE CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC IFPLDILLYPLFKHHGLQLRNRIVWTFGHGLHCQKRFSGRHETILWFTKSEDYTFNLDPV EEEHHHHHHHHHHHCCCEECCEEEEEECCCCCHHHHHCCCCCEEEEEECCCCEEECCCCE RVPSKYPNKKHFKGPNKGELSSNPLGKNPSDVWDIPNVKSNHVEKTDHPCQFPIGLVERL ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH VLALTNEGESVLDPYLGVGSSAIAALKHGRHAYGCDLDKAYVDIAWDRIHQLRAGTLRTR HHHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC PMNKPVYDPNA CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9073062 [H]