Definition Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession NC_008687
Length 1,730,097

Click here to switch to the map view.

The map label for this gene is 119386541

Identifier: 119386541

GI number: 119386541

Start: 970254

End: 970937

Strand: Direct

Name: 119386541

Synonym: Pden_3834

Alternate gene names: NA

Gene position: 970254-970937 (Clockwise)

Preceding gene: 119386539

Following gene: 119386544

Centisome position: 56.08

GC content: 63.74

Gene sequence:

>684_bases
GTGGTTTGCGCGCAGCCTGACCCCGGCCCGCTCGCATCACGACGGGCCGTAGGGACGGGGTCAGGCGAATTCGTTTTCCC
AGCAGGCCATCATCCAGCGCTCATCGCTGTCGGGCAGGTCGATGCCGTAGAATTCCAGCACTTGGGTCAGGTCGTAGATG
CGCTCTTCCTGTTCCGGCTCGGTCAGCGCGGCCCACCAGTTGCGTGCCTTGACCTCATCCGGCTGGAAGATCGATGCGGG
CAGTTCGCCTTTGAACGGTTGCGGGGGCATCACTTGTCTCCTGTCATCTGTCGCTGGGTCGTATCCAGCGCTGCCGCTGA
TCTGGGCGAGGCTGAGGCTGGGGCGGTGGCTCATGCCGCGCCTGAGCAATTCCTGGGCGGGAACCCCGTTCAGCGCACCA
GGTTCCCGCCCTCAGCCCTTGCAACGGGAAGCGCCCGGAGGTTCTGGAAGATATCGCAGGGCCGCCAATGCCATCTCCGC
ATTCACGCCGGCAGGCAGATCGACGATATCTCCTTCAGCGATACGCATCAGCCGCGCCCGCAGCGTATTCCAGCTGAGGG
GGCGGCCGGTCGTCATCTTGGCCATCACGACCCGACCGATGGTGAACGCAACCATGTCCGGGCTGTTCAGATAGTCAGGC
CCTTTACGCCGATATCCGTTGGTTGCGTGCATGGTCCCGTGTGA

Upstream 100 bases:

>100_bases
GAGATGTAGGGTATCTTGACCGGCGACAGCGTTAAGGAGTGCCGCCCGATGGGCGGCCGCAAACCCCATTCCGCCCCAGC
CTCGTGGGGGCGGTCGGAAT

Downstream 100 bases:

>100_bases
GGTCACCGCTTGCCTCCCGTCATCCACGGCCGGATCGCGTCCAGAGCCGCCGCCGATCCGGCGAGGCTGAAGCGGTGGCG
CTTGCCGCCGAAGCCGATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MVCAQPDPGPLASRRAVGTGSGEFVFPAGHHPALIAVGQVDAVEFQHLGQVVDALFLFRLGQRGPPVACLDLIRLEDRCG
QFAFERLRGHHLSPVICRWVVSSAAADLGEAEAGAVAHAAPEQFLGGNPVQRTRFPPSALATGSARRFWKISQGRQCHLR
IHAGRQIDDISFSDTHQPRPQRIPAEGAAGRHLGHHDPTDGERNHVRAVQIVRPFTPISVGCVHGPV

Sequences:

>Translated_227_residues
MVCAQPDPGPLASRRAVGTGSGEFVFPAGHHPALIAVGQVDAVEFQHLGQVVDALFLFRLGQRGPPVACLDLIRLEDRCG
QFAFERLRGHHLSPVICRWVVSSAAADLGEAEAGAVAHAAPEQFLGGNPVQRTRFPPSALATGSARRFWKISQGRQCHLR
IHAGRQIDDISFSDTHQPRPQRIPAEGAAGRHLGHHDPTDGERNHVRAVQIVRPFTPISVGCVHGPV
>Mature_227_residues
MVCAQPDPGPLASRRAVGTGSGEFVFPAGHHPALIAVGQVDAVEFQHLGQVVDALFLFRLGQRGPPVACLDLIRLEDRCG
QFAFERLRGHHLSPVICRWVVSSAAADLGEAEAGAVAHAAPEQFLGGNPVQRTRFPPSALATGSARRFWKISQGRQCHLR
IHAGRQIDDISFSDTHQPRPQRIPAEGAAGRHLGHHDPTDGERNHVRAVQIVRPFTPISVGCVHGPV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24464; Mature: 24464

Theoretical pI: Translated: 8.43; Mature: 8.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVCAQPDPGPLASRRAVGTGSGEFVFPAGHHPALIAVGQVDAVEFQHLGQVVDALFLFRL
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
GQRGPPVACLDLIRLEDRCGQFAFERLRGHHLSPVICRWVVSSAAADLGEAEAGAVAHAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCC
PEQFLGGNPVQRTRFPPSALATGSARRFWKISQGRQCHLRIHAGRQIDDISFSDTHQPRP
HHHHHCCCCCCCCCCCCHHHCCCCCHHEEECCCCCEEEEEEECCCEECCCCCCCCCCCCC
QRIPAEGAAGRHLGHHDPTDGERNHVRAVQIVRPFTPISVGCVHGPV
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCC
>Mature Secondary Structure
MVCAQPDPGPLASRRAVGTGSGEFVFPAGHHPALIAVGQVDAVEFQHLGQVVDALFLFRL
CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHH
GQRGPPVACLDLIRLEDRCGQFAFERLRGHHLSPVICRWVVSSAAADLGEAEAGAVAHAA
CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHCC
PEQFLGGNPVQRTRFPPSALATGSARRFWKISQGRQCHLRIHAGRQIDDISFSDTHQPRP
HHHHHCCCCCCCCCCCCHHHCCCCCHHEEECCCCCEEEEEEECCCEECCCCCCCCCCCCC
QRIPAEGAAGRHLGHHDPTDGERNHVRAVQIVRPFTPISVGCVHGPV
CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA