| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
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The map label for this gene is 119386477
Identifier: 119386477
GI number: 119386477
Start: 904896
End: 907511
Strand: Direct
Name: 119386477
Synonym: Pden_3770
Alternate gene names: NA
Gene position: 904896-907511 (Clockwise)
Preceding gene: 119386476
Following gene: 119386478
Centisome position: 52.3
GC content: 63.61
Gene sequence:
>2616_bases ATGGCAATGAGGGTTCCGCAATATGAGCGCCGCGAGGTGGTGCAGGCGCAGCGCCCCGTGGGCGTGGCGGCGCGTCAGTC CGGTTTCGGGCAGGTCGCCAAGGGACTGGCAGATGTCGGGCAGATGTTCGACCAGTGGCAGGCCGACGTGGACGAGGCCG ACGCCAAGGCGGCGGATACTGCGTTCGCAAAGACCGTCAGACAGGCGCTCTACGACCCCGAGCAGGGCTATCTCTATGCC CAGGGTGGCGATGCTCTATCCCGTCGCAAGGCGGCCATGGACGGCCTACAACGTGCCTATGACCAGCGGTTGAGCGGGCT AAGCCCGGCCGCGAAGGAGATGGCGCAGCGCGCGCTCGATAGCCGACTCCAGTCCGCGAATCTCGACATCGACCAGCACG CCGGGCGGGAGCGGATCACCTATCTGGACAGCCAAGCCGACGCCCGTATTCAGGCGGCAGCCGATGACGCGGTTCTCAAC CCCGCACTGATGGACCGTTCCATGCAGATCGCGCGAAACGAGGTCGCGGAAAAAGCGGCACGCCAAGGCTGGTCTCCAGA ACAGACGCAGGAGGAGCTGGGCCGGGTTCAGTCCGAGGTCTACCGCCTCACGTCCCTGAACATGATGCAGAACGATCCCG TCGCAGCGGCCGAGTTCGTCGCGACGAATGCGGACAAGTTTTCCGCAGTCGATCTGATGAACCTGCACGGCGCACTCGTC GGCCCCCTGGGCGAGGCGGCGGGCCGGGATGCGATCGCAGCGGCGCAATCTGCCGGTGGCGCGATTGATCAGGTGGCAGA TCGTATTATCGGCGCGGAAAGCGGCGGGAACCCGACCGCCAAGAACCCCAATTCTACTGCATCGGGCTTGGGACAGTTCA TCGACAGCACTTGGTTGAAAACGGTGAAATCCTACCGCCCGGACCTTGCGGCCGGCAAATCGGATGCCGAAATTCTGGCG CTTCGATCCGATGCTGCCCTGTCGCGTGAGATGACAAAGCGGTATGCTGCGGAAAACTCGGCCGCGCTGCTGAGGTCGGG ACATGCCGCAACGCCGGGGAATGTCTATCTGGCTCACTTCCTCGGCCCCGGCGGCGCGAACTCCATTCTTTCCGCCGATG ATGGCGCGGCTGTGGAAACCATCCTTCCCGAGGAGGTGATTAAGGCGAACGGATTCCTGCGCGGCATGAGTGTCGCTGAC TTGAAGGCATGGTCCGCCAGGAAGATGGGCGGGGCGGTGGCTCTAAGCCCCCAGGTTGCCTCTGCGATCAACACCCTTCC CGGCAACCTCGCCGCGCAGGTGCGCGAGACGGCCGCCAGCGGCGTCGCTTCGTGGGCGACCAAGCAGCAAGCCGCAGTCA AGGCCCAAATCCAGCAGGTCGAGGACAACGTAAGGCTCAGGATCGCGACCGCAGATCCGACGCTTACGGCTCAGGAAATC GTGAACCTGGGCATTGATGAGGGCACCAAGGCAACCTTGCTGAACTCTTTCAACGAAAAGACCAAGGTCGTTCAGCAGAC CCGTGCCGACGTGCTGTCCTTTGGCCAAGGCGGGCTGCATGTCGACCGATACAGCGCCGACGGAAAAAAGCGCGTCGATA ACCTCTGGAACGAGATGTCCAGCAGCCTGCCTGACGGCGCCGACGCGGGGGCGCTGGCGGCTGGGATTGTCGAGCAGACC GGACTTGTCCCTGCGCCGATCATGGGGGCGCTGCGCACCGCCCTGTCGGGCCAGAGCGCCGGGGATCTGAAGGATGCCCT TATCCTGGCATCGCGCCTCCATTCCCTCGATCCTGCTGCCTTCGGGCGACGCGGGGGAGGGTCGGAAATCGCCGACAAGG TGGCGATGTTCAATCATTCGACCGGCGTTCTGGGCTTGTCGCAGGACGAAGCGGCAAAGCAGATCATGGACTTGAACGAC CCGCAAAAGCGCCGCGAGCGTGATGCGTTGTTGAAGTCCGAGGGCGCAAAGAAGTGGATCAAGGACACCGCCACGCCAGA GAGCGTGCGGGCGATCTTCGATGCTGGGATTTTCAGCCGTGCGCCGGCCCTCGGTGAAAATGAGCTGCAAAAATCTGCGG CAGTGTCTGAGTATGGCGAGATACTGGAGCAGGCGCTCTATGACGCTGGCGGCGACCAGGACAAGGCCAAGGTGATTGCT GGAGAACGGTTCCGGCGGCTCTATGGCCCCTCGAAATACCTGCCTTCCGGTTCTGGCGCCGTGACCCGCCTGCCGCCCGA AGTGACCTATCCGGCGGGGGTGGACGGCACTCACGATTATATCGGCGATCAGGCGCGCGCTGCGCTTGCAGAGGCCGGGA TCGCCCCGGAGGAGGGCTTCGTTCAGCAGGTATTCCTCCAGGCATACGACGACACGGCTGCCGATGTGCAGGCCGGTCGC CCGCCGCGCTATGAGCTTTGGTTCGTGGATGGAGAGGGCAAGGTCCAGCGGGCGCAGCATCCGTTCTATGCCGAGCCTCC GTCGCAGGACGAGGCCCTGGCGGCTCGGAAGGCCGAGGCAATGAAGGAGCGTGACCGGCTGATGAAACTTCATGAGCAAG GTAAGGAACTCATGGAAAACTCGCCACTCTATGGCGCTGCCGCCGTCAGCTTTTGA
Upstream 100 bases:
>100_bases GGCGCTGGGGCGCGGCCAGCACGATCCTGTCGACCGGCGCCAAGGTGGGCGAGAAATACAGCCAGTGGGCGCGTGACCGT GCAACTCCGAGGTATGCGTG
Downstream 100 bases:
>100_bases TTTTCAGGGAGAGCAGCATGCCCATTGATCGCGATACCGTTCTTGGAACGCCGAAGGTTCCCGCCGGGCTTGGACTCGAT CCGTCCCTGTCCCAAACTCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 871; Mature: 870
Protein sequence:
>871_residues MAMRVPQYERREVVQAQRPVGVAARQSGFGQVAKGLADVGQMFDQWQADVDEADAKAADTAFAKTVRQALYDPEQGYLYA QGGDALSRRKAAMDGLQRAYDQRLSGLSPAAKEMAQRALDSRLQSANLDIDQHAGRERITYLDSQADARIQAAADDAVLN PALMDRSMQIARNEVAEKAARQGWSPEQTQEELGRVQSEVYRLTSLNMMQNDPVAAAEFVATNADKFSAVDLMNLHGALV GPLGEAAGRDAIAAAQSAGGAIDQVADRIIGAESGGNPTAKNPNSTASGLGQFIDSTWLKTVKSYRPDLAAGKSDAEILA LRSDAALSREMTKRYAAENSAALLRSGHAATPGNVYLAHFLGPGGANSILSADDGAAVETILPEEVIKANGFLRGMSVAD LKAWSARKMGGAVALSPQVASAINTLPGNLAAQVRETAASGVASWATKQQAAVKAQIQQVEDNVRLRIATADPTLTAQEI VNLGIDEGTKATLLNSFNEKTKVVQQTRADVLSFGQGGLHVDRYSADGKKRVDNLWNEMSSSLPDGADAGALAAGIVEQT GLVPAPIMGALRTALSGQSAGDLKDALILASRLHSLDPAAFGRRGGGSEIADKVAMFNHSTGVLGLSQDEAAKQIMDLND PQKRRERDALLKSEGAKKWIKDTATPESVRAIFDAGIFSRAPALGENELQKSAAVSEYGEILEQALYDAGGDQDKAKVIA GERFRRLYGPSKYLPSGSGAVTRLPPEVTYPAGVDGTHDYIGDQARAALAEAGIAPEEGFVQQVFLQAYDDTAADVQAGR PPRYELWFVDGEGKVQRAQHPFYAEPPSQDEALAARKAEAMKERDRLMKLHEQGKELMENSPLYGAAAVSF
Sequences:
>Translated_871_residues MAMRVPQYERREVVQAQRPVGVAARQSGFGQVAKGLADVGQMFDQWQADVDEADAKAADTAFAKTVRQALYDPEQGYLYA QGGDALSRRKAAMDGLQRAYDQRLSGLSPAAKEMAQRALDSRLQSANLDIDQHAGRERITYLDSQADARIQAAADDAVLN PALMDRSMQIARNEVAEKAARQGWSPEQTQEELGRVQSEVYRLTSLNMMQNDPVAAAEFVATNADKFSAVDLMNLHGALV GPLGEAAGRDAIAAAQSAGGAIDQVADRIIGAESGGNPTAKNPNSTASGLGQFIDSTWLKTVKSYRPDLAAGKSDAEILA LRSDAALSREMTKRYAAENSAALLRSGHAATPGNVYLAHFLGPGGANSILSADDGAAVETILPEEVIKANGFLRGMSVAD LKAWSARKMGGAVALSPQVASAINTLPGNLAAQVRETAASGVASWATKQQAAVKAQIQQVEDNVRLRIATADPTLTAQEI VNLGIDEGTKATLLNSFNEKTKVVQQTRADVLSFGQGGLHVDRYSADGKKRVDNLWNEMSSSLPDGADAGALAAGIVEQT GLVPAPIMGALRTALSGQSAGDLKDALILASRLHSLDPAAFGRRGGGSEIADKVAMFNHSTGVLGLSQDEAAKQIMDLND PQKRRERDALLKSEGAKKWIKDTATPESVRAIFDAGIFSRAPALGENELQKSAAVSEYGEILEQALYDAGGDQDKAKVIA GERFRRLYGPSKYLPSGSGAVTRLPPEVTYPAGVDGTHDYIGDQARAALAEAGIAPEEGFVQQVFLQAYDDTAADVQAGR PPRYELWFVDGEGKVQRAQHPFYAEPPSQDEALAARKAEAMKERDRLMKLHEQGKELMENSPLYGAAAVSF >Mature_870_residues AMRVPQYERREVVQAQRPVGVAARQSGFGQVAKGLADVGQMFDQWQADVDEADAKAADTAFAKTVRQALYDPEQGYLYAQ GGDALSRRKAAMDGLQRAYDQRLSGLSPAAKEMAQRALDSRLQSANLDIDQHAGRERITYLDSQADARIQAAADDAVLNP ALMDRSMQIARNEVAEKAARQGWSPEQTQEELGRVQSEVYRLTSLNMMQNDPVAAAEFVATNADKFSAVDLMNLHGALVG PLGEAAGRDAIAAAQSAGGAIDQVADRIIGAESGGNPTAKNPNSTASGLGQFIDSTWLKTVKSYRPDLAAGKSDAEILAL RSDAALSREMTKRYAAENSAALLRSGHAATPGNVYLAHFLGPGGANSILSADDGAAVETILPEEVIKANGFLRGMSVADL KAWSARKMGGAVALSPQVASAINTLPGNLAAQVRETAASGVASWATKQQAAVKAQIQQVEDNVRLRIATADPTLTAQEIV NLGIDEGTKATLLNSFNEKTKVVQQTRADVLSFGQGGLHVDRYSADGKKRVDNLWNEMSSSLPDGADAGALAAGIVEQTG LVPAPIMGALRTALSGQSAGDLKDALILASRLHSLDPAAFGRRGGGSEIADKVAMFNHSTGVLGLSQDEAAKQIMDLNDP QKRRERDALLKSEGAKKWIKDTATPESVRAIFDAGIFSRAPALGENELQKSAAVSEYGEILEQALYDAGGDQDKAKVIAG ERFRRLYGPSKYLPSGSGAVTRLPPEVTYPAGVDGTHDYIGDQARAALAEAGIAPEEGFVQQVFLQAYDDTAADVQAGRP PRYELWFVDGEGKVQRAQHPFYAEPPSQDEALAARKAEAMKERDRLMKLHEQGKELMENSPLYGAAAVSF
Specific function: Unknown
COG id: COG0739
COG function: function code M; Membrane proteins related to metalloendopeptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 92669; Mature: 92537
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMRVPQYERREVVQAQRPVGVAARQSGFGQVAKGLADVGQMFDQWQADVDEADAKAADT CCCCCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH AFAKTVRQALYDPEQGYLYAQGGDALSRRKAAMDGLQRAYDQRLSGLSPAAKEMAQRALD HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH SRLQSANLDIDQHAGRERITYLDSQADARIQAAADDAVLNPALMDRSMQIARNEVAEKAA HHHHHCCCCHHHHCCCHHHEEECCCCCCEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHH RQGWSPEQTQEELGRVQSEVYRLTSLNMMQNDPVAAAEFVATNADKFSAVDLMNLHGALV HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH GPLGEAAGRDAIAAAQSAGGAIDQVADRIIGAESGGNPTAKNPNSTASGLGQFIDSTWLK CCHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH TVKSYRPDLAAGKSDAEILALRSDAALSREMTKRYAAENSAALLRSGHAATPGNVYLAHF HHHHHCCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEEE LGPGGANSILSADDGAAVETILPEEVIKANGFLRGMSVADLKAWSARKMGGAVALSPQVA ECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECHHHH SAINTLPGNLAAQVRETAASGVASWATKQQAAVKAQIQQVEDNVRLRIATADPTLTAQEI HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH VNLGIDEGTKATLLNSFNEKTKVVQQTRADVLSFGQGGLHVDRYSADGKKRVDNLWNEMS HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHH SSLPDGADAGALAAGIVEQTGLVPAPIMGALRTALSGQSAGDLKDALILASRLHSLDPAA HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH FGRRGGGSEIADKVAMFNHSTGVLGLSQDEAAKQIMDLNDPQKRRERDALLKSEGAKKWI HCCCCCCHHHHHHHHHHCCCCCCEECCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHH KDTATPESVRAIFDAGIFSRAPALGENELQKSAAVSEYGEILEQALYDAGGDQDKAKVIA HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH GERFRRLYGPSKYLPSGSGAVTRLPPEVTYPAGVDGTHDYIGDQARAALAEAGIAPEEGF HHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCHHH VQQVFLQAYDDTAADVQAGRPPRYELWFVDGEGKVQRAQHPFYAEPPSQDEALAARKAEA HHHHHHHHHCCCHHHHCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH MKERDRLMKLHEQGKELMENSPLYGAAAVSF HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure AMRVPQYERREVVQAQRPVGVAARQSGFGQVAKGLADVGQMFDQWQADVDEADAKAADT CCCCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH AFAKTVRQALYDPEQGYLYAQGGDALSRRKAAMDGLQRAYDQRLSGLSPAAKEMAQRALD HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH SRLQSANLDIDQHAGRERITYLDSQADARIQAAADDAVLNPALMDRSMQIARNEVAEKAA HHHHHCCCCHHHHCCCHHHEEECCCCCCEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHH RQGWSPEQTQEELGRVQSEVYRLTSLNMMQNDPVAAAEFVATNADKFSAVDLMNLHGALV HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH GPLGEAAGRDAIAAAQSAGGAIDQVADRIIGAESGGNPTAKNPNSTASGLGQFIDSTWLK CCHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH TVKSYRPDLAAGKSDAEILALRSDAALSREMTKRYAAENSAALLRSGHAATPGNVYLAHF HHHHHCCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEEE LGPGGANSILSADDGAAVETILPEEVIKANGFLRGMSVADLKAWSARKMGGAVALSPQVA ECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECHHHH SAINTLPGNLAAQVRETAASGVASWATKQQAAVKAQIQQVEDNVRLRIATADPTLTAQEI HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH VNLGIDEGTKATLLNSFNEKTKVVQQTRADVLSFGQGGLHVDRYSADGKKRVDNLWNEMS HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHH SSLPDGADAGALAAGIVEQTGLVPAPIMGALRTALSGQSAGDLKDALILASRLHSLDPAA HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH FGRRGGGSEIADKVAMFNHSTGVLGLSQDEAAKQIMDLNDPQKRRERDALLKSEGAKKWI HCCCCCCHHHHHHHHHHCCCCCCEECCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHH KDTATPESVRAIFDAGIFSRAPALGENELQKSAAVSEYGEILEQALYDAGGDQDKAKVIA HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH GERFRRLYGPSKYLPSGSGAVTRLPPEVTYPAGVDGTHDYIGDQARAALAEAGIAPEEGF HHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCHHH VQQVFLQAYDDTAADVQAGRPPRYELWFVDGEGKVQRAQHPFYAEPPSQDEALAARKAEA HHHHHHHHHCCCHHHHCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH MKERDRLMKLHEQGKELMENSPLYGAAAVSF HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA