Definition Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession NC_008687
Length 1,730,097

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The map label for this gene is 119386477

Identifier: 119386477

GI number: 119386477

Start: 904896

End: 907511

Strand: Direct

Name: 119386477

Synonym: Pden_3770

Alternate gene names: NA

Gene position: 904896-907511 (Clockwise)

Preceding gene: 119386476

Following gene: 119386478

Centisome position: 52.3

GC content: 63.61

Gene sequence:

>2616_bases
ATGGCAATGAGGGTTCCGCAATATGAGCGCCGCGAGGTGGTGCAGGCGCAGCGCCCCGTGGGCGTGGCGGCGCGTCAGTC
CGGTTTCGGGCAGGTCGCCAAGGGACTGGCAGATGTCGGGCAGATGTTCGACCAGTGGCAGGCCGACGTGGACGAGGCCG
ACGCCAAGGCGGCGGATACTGCGTTCGCAAAGACCGTCAGACAGGCGCTCTACGACCCCGAGCAGGGCTATCTCTATGCC
CAGGGTGGCGATGCTCTATCCCGTCGCAAGGCGGCCATGGACGGCCTACAACGTGCCTATGACCAGCGGTTGAGCGGGCT
AAGCCCGGCCGCGAAGGAGATGGCGCAGCGCGCGCTCGATAGCCGACTCCAGTCCGCGAATCTCGACATCGACCAGCACG
CCGGGCGGGAGCGGATCACCTATCTGGACAGCCAAGCCGACGCCCGTATTCAGGCGGCAGCCGATGACGCGGTTCTCAAC
CCCGCACTGATGGACCGTTCCATGCAGATCGCGCGAAACGAGGTCGCGGAAAAAGCGGCACGCCAAGGCTGGTCTCCAGA
ACAGACGCAGGAGGAGCTGGGCCGGGTTCAGTCCGAGGTCTACCGCCTCACGTCCCTGAACATGATGCAGAACGATCCCG
TCGCAGCGGCCGAGTTCGTCGCGACGAATGCGGACAAGTTTTCCGCAGTCGATCTGATGAACCTGCACGGCGCACTCGTC
GGCCCCCTGGGCGAGGCGGCGGGCCGGGATGCGATCGCAGCGGCGCAATCTGCCGGTGGCGCGATTGATCAGGTGGCAGA
TCGTATTATCGGCGCGGAAAGCGGCGGGAACCCGACCGCCAAGAACCCCAATTCTACTGCATCGGGCTTGGGACAGTTCA
TCGACAGCACTTGGTTGAAAACGGTGAAATCCTACCGCCCGGACCTTGCGGCCGGCAAATCGGATGCCGAAATTCTGGCG
CTTCGATCCGATGCTGCCCTGTCGCGTGAGATGACAAAGCGGTATGCTGCGGAAAACTCGGCCGCGCTGCTGAGGTCGGG
ACATGCCGCAACGCCGGGGAATGTCTATCTGGCTCACTTCCTCGGCCCCGGCGGCGCGAACTCCATTCTTTCCGCCGATG
ATGGCGCGGCTGTGGAAACCATCCTTCCCGAGGAGGTGATTAAGGCGAACGGATTCCTGCGCGGCATGAGTGTCGCTGAC
TTGAAGGCATGGTCCGCCAGGAAGATGGGCGGGGCGGTGGCTCTAAGCCCCCAGGTTGCCTCTGCGATCAACACCCTTCC
CGGCAACCTCGCCGCGCAGGTGCGCGAGACGGCCGCCAGCGGCGTCGCTTCGTGGGCGACCAAGCAGCAAGCCGCAGTCA
AGGCCCAAATCCAGCAGGTCGAGGACAACGTAAGGCTCAGGATCGCGACCGCAGATCCGACGCTTACGGCTCAGGAAATC
GTGAACCTGGGCATTGATGAGGGCACCAAGGCAACCTTGCTGAACTCTTTCAACGAAAAGACCAAGGTCGTTCAGCAGAC
CCGTGCCGACGTGCTGTCCTTTGGCCAAGGCGGGCTGCATGTCGACCGATACAGCGCCGACGGAAAAAAGCGCGTCGATA
ACCTCTGGAACGAGATGTCCAGCAGCCTGCCTGACGGCGCCGACGCGGGGGCGCTGGCGGCTGGGATTGTCGAGCAGACC
GGACTTGTCCCTGCGCCGATCATGGGGGCGCTGCGCACCGCCCTGTCGGGCCAGAGCGCCGGGGATCTGAAGGATGCCCT
TATCCTGGCATCGCGCCTCCATTCCCTCGATCCTGCTGCCTTCGGGCGACGCGGGGGAGGGTCGGAAATCGCCGACAAGG
TGGCGATGTTCAATCATTCGACCGGCGTTCTGGGCTTGTCGCAGGACGAAGCGGCAAAGCAGATCATGGACTTGAACGAC
CCGCAAAAGCGCCGCGAGCGTGATGCGTTGTTGAAGTCCGAGGGCGCAAAGAAGTGGATCAAGGACACCGCCACGCCAGA
GAGCGTGCGGGCGATCTTCGATGCTGGGATTTTCAGCCGTGCGCCGGCCCTCGGTGAAAATGAGCTGCAAAAATCTGCGG
CAGTGTCTGAGTATGGCGAGATACTGGAGCAGGCGCTCTATGACGCTGGCGGCGACCAGGACAAGGCCAAGGTGATTGCT
GGAGAACGGTTCCGGCGGCTCTATGGCCCCTCGAAATACCTGCCTTCCGGTTCTGGCGCCGTGACCCGCCTGCCGCCCGA
AGTGACCTATCCGGCGGGGGTGGACGGCACTCACGATTATATCGGCGATCAGGCGCGCGCTGCGCTTGCAGAGGCCGGGA
TCGCCCCGGAGGAGGGCTTCGTTCAGCAGGTATTCCTCCAGGCATACGACGACACGGCTGCCGATGTGCAGGCCGGTCGC
CCGCCGCGCTATGAGCTTTGGTTCGTGGATGGAGAGGGCAAGGTCCAGCGGGCGCAGCATCCGTTCTATGCCGAGCCTCC
GTCGCAGGACGAGGCCCTGGCGGCTCGGAAGGCCGAGGCAATGAAGGAGCGTGACCGGCTGATGAAACTTCATGAGCAAG
GTAAGGAACTCATGGAAAACTCGCCACTCTATGGCGCTGCCGCCGTCAGCTTTTGA

Upstream 100 bases:

>100_bases
GGCGCTGGGGCGCGGCCAGCACGATCCTGTCGACCGGCGCCAAGGTGGGCGAGAAATACAGCCAGTGGGCGCGTGACCGT
GCAACTCCGAGGTATGCGTG

Downstream 100 bases:

>100_bases
TTTTCAGGGAGAGCAGCATGCCCATTGATCGCGATACCGTTCTTGGAACGCCGAAGGTTCCCGCCGGGCTTGGACTCGAT
CCGTCCCTGTCCCAAACTCT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 871; Mature: 870

Protein sequence:

>871_residues
MAMRVPQYERREVVQAQRPVGVAARQSGFGQVAKGLADVGQMFDQWQADVDEADAKAADTAFAKTVRQALYDPEQGYLYA
QGGDALSRRKAAMDGLQRAYDQRLSGLSPAAKEMAQRALDSRLQSANLDIDQHAGRERITYLDSQADARIQAAADDAVLN
PALMDRSMQIARNEVAEKAARQGWSPEQTQEELGRVQSEVYRLTSLNMMQNDPVAAAEFVATNADKFSAVDLMNLHGALV
GPLGEAAGRDAIAAAQSAGGAIDQVADRIIGAESGGNPTAKNPNSTASGLGQFIDSTWLKTVKSYRPDLAAGKSDAEILA
LRSDAALSREMTKRYAAENSAALLRSGHAATPGNVYLAHFLGPGGANSILSADDGAAVETILPEEVIKANGFLRGMSVAD
LKAWSARKMGGAVALSPQVASAINTLPGNLAAQVRETAASGVASWATKQQAAVKAQIQQVEDNVRLRIATADPTLTAQEI
VNLGIDEGTKATLLNSFNEKTKVVQQTRADVLSFGQGGLHVDRYSADGKKRVDNLWNEMSSSLPDGADAGALAAGIVEQT
GLVPAPIMGALRTALSGQSAGDLKDALILASRLHSLDPAAFGRRGGGSEIADKVAMFNHSTGVLGLSQDEAAKQIMDLND
PQKRRERDALLKSEGAKKWIKDTATPESVRAIFDAGIFSRAPALGENELQKSAAVSEYGEILEQALYDAGGDQDKAKVIA
GERFRRLYGPSKYLPSGSGAVTRLPPEVTYPAGVDGTHDYIGDQARAALAEAGIAPEEGFVQQVFLQAYDDTAADVQAGR
PPRYELWFVDGEGKVQRAQHPFYAEPPSQDEALAARKAEAMKERDRLMKLHEQGKELMENSPLYGAAAVSF

Sequences:

>Translated_871_residues
MAMRVPQYERREVVQAQRPVGVAARQSGFGQVAKGLADVGQMFDQWQADVDEADAKAADTAFAKTVRQALYDPEQGYLYA
QGGDALSRRKAAMDGLQRAYDQRLSGLSPAAKEMAQRALDSRLQSANLDIDQHAGRERITYLDSQADARIQAAADDAVLN
PALMDRSMQIARNEVAEKAARQGWSPEQTQEELGRVQSEVYRLTSLNMMQNDPVAAAEFVATNADKFSAVDLMNLHGALV
GPLGEAAGRDAIAAAQSAGGAIDQVADRIIGAESGGNPTAKNPNSTASGLGQFIDSTWLKTVKSYRPDLAAGKSDAEILA
LRSDAALSREMTKRYAAENSAALLRSGHAATPGNVYLAHFLGPGGANSILSADDGAAVETILPEEVIKANGFLRGMSVAD
LKAWSARKMGGAVALSPQVASAINTLPGNLAAQVRETAASGVASWATKQQAAVKAQIQQVEDNVRLRIATADPTLTAQEI
VNLGIDEGTKATLLNSFNEKTKVVQQTRADVLSFGQGGLHVDRYSADGKKRVDNLWNEMSSSLPDGADAGALAAGIVEQT
GLVPAPIMGALRTALSGQSAGDLKDALILASRLHSLDPAAFGRRGGGSEIADKVAMFNHSTGVLGLSQDEAAKQIMDLND
PQKRRERDALLKSEGAKKWIKDTATPESVRAIFDAGIFSRAPALGENELQKSAAVSEYGEILEQALYDAGGDQDKAKVIA
GERFRRLYGPSKYLPSGSGAVTRLPPEVTYPAGVDGTHDYIGDQARAALAEAGIAPEEGFVQQVFLQAYDDTAADVQAGR
PPRYELWFVDGEGKVQRAQHPFYAEPPSQDEALAARKAEAMKERDRLMKLHEQGKELMENSPLYGAAAVSF
>Mature_870_residues
AMRVPQYERREVVQAQRPVGVAARQSGFGQVAKGLADVGQMFDQWQADVDEADAKAADTAFAKTVRQALYDPEQGYLYAQ
GGDALSRRKAAMDGLQRAYDQRLSGLSPAAKEMAQRALDSRLQSANLDIDQHAGRERITYLDSQADARIQAAADDAVLNP
ALMDRSMQIARNEVAEKAARQGWSPEQTQEELGRVQSEVYRLTSLNMMQNDPVAAAEFVATNADKFSAVDLMNLHGALVG
PLGEAAGRDAIAAAQSAGGAIDQVADRIIGAESGGNPTAKNPNSTASGLGQFIDSTWLKTVKSYRPDLAAGKSDAEILAL
RSDAALSREMTKRYAAENSAALLRSGHAATPGNVYLAHFLGPGGANSILSADDGAAVETILPEEVIKANGFLRGMSVADL
KAWSARKMGGAVALSPQVASAINTLPGNLAAQVRETAASGVASWATKQQAAVKAQIQQVEDNVRLRIATADPTLTAQEIV
NLGIDEGTKATLLNSFNEKTKVVQQTRADVLSFGQGGLHVDRYSADGKKRVDNLWNEMSSSLPDGADAGALAAGIVEQTG
LVPAPIMGALRTALSGQSAGDLKDALILASRLHSLDPAAFGRRGGGSEIADKVAMFNHSTGVLGLSQDEAAKQIMDLNDP
QKRRERDALLKSEGAKKWIKDTATPESVRAIFDAGIFSRAPALGENELQKSAAVSEYGEILEQALYDAGGDQDKAKVIAG
ERFRRLYGPSKYLPSGSGAVTRLPPEVTYPAGVDGTHDYIGDQARAALAEAGIAPEEGFVQQVFLQAYDDTAADVQAGRP
PRYELWFVDGEGKVQRAQHPFYAEPPSQDEALAARKAEAMKERDRLMKLHEQGKELMENSPLYGAAAVSF

Specific function: Unknown

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 92669; Mature: 92537

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAMRVPQYERREVVQAQRPVGVAARQSGFGQVAKGLADVGQMFDQWQADVDEADAKAADT
CCCCCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AFAKTVRQALYDPEQGYLYAQGGDALSRRKAAMDGLQRAYDQRLSGLSPAAKEMAQRALD
HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SRLQSANLDIDQHAGRERITYLDSQADARIQAAADDAVLNPALMDRSMQIARNEVAEKAA
HHHHHCCCCHHHHCCCHHHEEECCCCCCEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHH
RQGWSPEQTQEELGRVQSEVYRLTSLNMMQNDPVAAAEFVATNADKFSAVDLMNLHGALV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
GPLGEAAGRDAIAAAQSAGGAIDQVADRIIGAESGGNPTAKNPNSTASGLGQFIDSTWLK
CCHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
TVKSYRPDLAAGKSDAEILALRSDAALSREMTKRYAAENSAALLRSGHAATPGNVYLAHF
HHHHHCCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEEE
LGPGGANSILSADDGAAVETILPEEVIKANGFLRGMSVADLKAWSARKMGGAVALSPQVA
ECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECHHHH
SAINTLPGNLAAQVRETAASGVASWATKQQAAVKAQIQQVEDNVRLRIATADPTLTAQEI
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
VNLGIDEGTKATLLNSFNEKTKVVQQTRADVLSFGQGGLHVDRYSADGKKRVDNLWNEMS
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHH
SSLPDGADAGALAAGIVEQTGLVPAPIMGALRTALSGQSAGDLKDALILASRLHSLDPAA
HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
FGRRGGGSEIADKVAMFNHSTGVLGLSQDEAAKQIMDLNDPQKRRERDALLKSEGAKKWI
HCCCCCCHHHHHHHHHHCCCCCCEECCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHH
KDTATPESVRAIFDAGIFSRAPALGENELQKSAAVSEYGEILEQALYDAGGDQDKAKVIA
HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
GERFRRLYGPSKYLPSGSGAVTRLPPEVTYPAGVDGTHDYIGDQARAALAEAGIAPEEGF
HHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCHHH
VQQVFLQAYDDTAADVQAGRPPRYELWFVDGEGKVQRAQHPFYAEPPSQDEALAARKAEA
HHHHHHHHHCCCHHHHCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH
MKERDRLMKLHEQGKELMENSPLYGAAAVSF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AMRVPQYERREVVQAQRPVGVAARQSGFGQVAKGLADVGQMFDQWQADVDEADAKAADT
CCCCCCHHHHHHHHHHCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
AFAKTVRQALYDPEQGYLYAQGGDALSRRKAAMDGLQRAYDQRLSGLSPAAKEMAQRALD
HHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
SRLQSANLDIDQHAGRERITYLDSQADARIQAAADDAVLNPALMDRSMQIARNEVAEKAA
HHHHHCCCCHHHHCCCHHHEEECCCCCCEEECCCCHHHHCHHHHHHHHHHHHHHHHHHHH
RQGWSPEQTQEELGRVQSEVYRLTSLNMMQNDPVAAAEFVATNADKFSAVDLMNLHGALV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHH
GPLGEAAGRDAIAAAQSAGGAIDQVADRIIGAESGGNPTAKNPNSTASGLGQFIDSTWLK
CCHHHHCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
TVKSYRPDLAAGKSDAEILALRSDAALSREMTKRYAAENSAALLRSGHAATPGNVYLAHF
HHHHHCCCHHCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCEEEEEE
LGPGGANSILSADDGAAVETILPEEVIKANGFLRGMSVADLKAWSARKMGGAVALSPQVA
ECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCEEEECHHHH
SAINTLPGNLAAQVRETAASGVASWATKQQAAVKAQIQQVEDNVRLRIATADPTLTAQEI
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
VNLGIDEGTKATLLNSFNEKTKVVQQTRADVLSFGQGGLHVDRYSADGKKRVDNLWNEMS
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHH
SSLPDGADAGALAAGIVEQTGLVPAPIMGALRTALSGQSAGDLKDALILASRLHSLDPAA
HCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
FGRRGGGSEIADKVAMFNHSTGVLGLSQDEAAKQIMDLNDPQKRRERDALLKSEGAKKWI
HCCCCCCHHHHHHHHHHCCCCCCEECCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHH
KDTATPESVRAIFDAGIFSRAPALGENELQKSAAVSEYGEILEQALYDAGGDQDKAKVIA
HCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
GERFRRLYGPSKYLPSGSGAVTRLPPEVTYPAGVDGTHDYIGDQARAALAEAGIAPEEGF
HHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHCHHHHHHHHHCCCCCCHHH
VQQVFLQAYDDTAADVQAGRPPRYELWFVDGEGKVQRAQHPFYAEPPSQDEALAARKAEA
HHHHHHHHHCCCHHHHCCCCCCCEEEEEECCCCCHHHCCCCCCCCCCCCHHHHHHHHHHH
MKERDRLMKLHEQGKELMENSPLYGAAAVSF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA