| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
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The map label for this gene is 119386466
Identifier: 119386466
GI number: 119386466
Start: 896330
End: 898006
Strand: Direct
Name: 119386466
Synonym: Pden_3759
Alternate gene names: NA
Gene position: 896330-898006 (Clockwise)
Preceding gene: 119386465
Following gene: 119386467
Centisome position: 51.81
GC content: 66.01
Gene sequence:
>1677_bases ATGGCCGCCATCGTCAACCAGCAACTGCGCAAGACCCTGGACTATCGCCGGCAGGCGATGAACCAGGAGTTTGACTATTG GCAGGGGCATTTCCGCGAGTTGCGGGATGCGATCCAGCCGACGCGCGGCCGGTTCGAGGCGAGCGAGCGGCGCAGCGATT CCTCCATCAACAAGCGCATCCTCGACAATACCGCCCAGATGGCGCTGCGCACGCTGCGCGCCGGGCTCATGTCGGGCGTG ACCTCGCCGTCTCGGCCGTGGTTCCGGCTGGGCCTGCGCGGCTCCACCGCTGACGAAGCCGAGTTCGAGGTCAAGGACTG GCTGCACGAGGTCCAGCGCCGCATGTATGAGGTCATGCGGGGCTCGAACATCTACCGCATGCTGGACACCACCTATGGCG ATCTGGGCCTCTACGGCACCGCGGCCAATCTGGTGGTGCCGGATTTCGAGGACGTGGTGCGCGGGCACAACCTGCAAGTC GGGCGCTTCCGGCTGGGCGAGGACGGCAACGGCCGGGTGATCGCGCTGTATCGCGAGCTGAAAATGCCGGTGCGCGGTAT CGTCGAAACCTGGGGGCTGGATGCCGTCTCGCAATCGGTTCGCCGGGCTTGGGACACGGGCGAGTATTACCAGACCTTCA CCATCTGCCACATGATCGACAAGCGCGCCGACGGCGATCCGAAGGCCATGCAGTCCAGTGGACGGCCCTGGGCCTCGATC TATTGGGAGATGGACGCGCCGAGCGGGCAGTTCCTCCAGATCGGCGGCCACCGGGTCAAGCCGCTGCTGGCGCCGCGCTG GGAACAGGTCGAGGGCGAGGCATGGTCGGCGTCGTCTCCCGGCATGGTGGCGCTCGGCGATGCCCGCTCGTTGCAGGTGT CGCAGGAGCAGAAGGCCATCGCGATCCAGAAGATGCACAACCCGCCCCTGATCGGCGGGGCGGTGCAGGGCGGCATGTTC TTCAAGAACGTGCCCGGCGGCTTCACGGCCATGGCAACGCAAGACCTTTCCACCGGCGGTATCCGCCCGGCCTATGAGGT GCGCCCCGACATTCAGGGCCTGATCATCGACATTCAGGAAAGCCAGCGACGGGTCGAGGTCGCGTTCTACAAGGATCTGT TCCAGATGACCGCGCTGGCGCTGGACGGGCGCAGCCAGATCACGGCGCGCGAGATTGCCGAGCGCCACGAGGAAAAGCTG ATGGCCTTGGGTCCGGTGCTGGAAAGCCTGGACCATGAGCTGCTGCAACCGCTGATCGAGGCGACGTTCGCCTATATGCA GGAGGCAGACATTCTGCCCGAGGCGCCGGAAGGCATCGTGGGTAACCCGATCAAGGTCGAATACATCTCGCTGCTGGCCC AGGCGCAGAAGGCCATCGGCATCGGTGCGATCGAACGGACTATCGGATTCGCCGGCACGCTGGCGCAGATCAAGCCCGAC GTGATCGACATGATCGACGGTGAGCAGATGATGCGCGAGTTCGCGGATCAGGTCGGCGGCCCGCCCGGCATCCTCCTGTC GCCCGACGAACTGCGCGAGGTCCGCGAAGCCAAAGCGCGTGCCGCGGCGCAGGCGCAGGCCATCGAGGCGGCGGAGCCCA TGGCCGGGGCTGCAAAGCTCATTTCCGAGGCCACACTGAACGGCATGGACGCCCTGCAACGGGGGGCGGCGCTATGA
Upstream 100 bases:
>100_bases CCGCTCGAAATCGGGCCGGCAGGGCACCATCCTGACTGAAGCCGCCGGGCAGACCTATGCCCCGGACGGCAAGAAGACGC TTCTGGGGGCCTGACCGTTC
Downstream 100 bases:
>100_bases CCGAGCGCATCTCGGAAATCATCGCCGAGCGCCGGGCGCTGGAGGTCCGGCAGGCGTGGGGCACGGTGCTGGGCACCCGC GAGGGCCGGCTGGTCATGTG
Product: putative head-tail connector protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 558; Mature: 557
Protein sequence:
>558_residues MAAIVNQQLRKTLDYRRQAMNQEFDYWQGHFRELRDAIQPTRGRFEASERRSDSSINKRILDNTAQMALRTLRAGLMSGV TSPSRPWFRLGLRGSTADEAEFEVKDWLHEVQRRMYEVMRGSNIYRMLDTTYGDLGLYGTAANLVVPDFEDVVRGHNLQV GRFRLGEDGNGRVIALYRELKMPVRGIVETWGLDAVSQSVRRAWDTGEYYQTFTICHMIDKRADGDPKAMQSSGRPWASI YWEMDAPSGQFLQIGGHRVKPLLAPRWEQVEGEAWSASSPGMVALGDARSLQVSQEQKAIAIQKMHNPPLIGGAVQGGMF FKNVPGGFTAMATQDLSTGGIRPAYEVRPDIQGLIIDIQESQRRVEVAFYKDLFQMTALALDGRSQITAREIAERHEEKL MALGPVLESLDHELLQPLIEATFAYMQEADILPEAPEGIVGNPIKVEYISLLAQAQKAIGIGAIERTIGFAGTLAQIKPD VIDMIDGEQMMREFADQVGGPPGILLSPDELREVREAKARAAAQAQAIEAAEPMAGAAKLISEATLNGMDALQRGAAL
Sequences:
>Translated_558_residues MAAIVNQQLRKTLDYRRQAMNQEFDYWQGHFRELRDAIQPTRGRFEASERRSDSSINKRILDNTAQMALRTLRAGLMSGV TSPSRPWFRLGLRGSTADEAEFEVKDWLHEVQRRMYEVMRGSNIYRMLDTTYGDLGLYGTAANLVVPDFEDVVRGHNLQV GRFRLGEDGNGRVIALYRELKMPVRGIVETWGLDAVSQSVRRAWDTGEYYQTFTICHMIDKRADGDPKAMQSSGRPWASI YWEMDAPSGQFLQIGGHRVKPLLAPRWEQVEGEAWSASSPGMVALGDARSLQVSQEQKAIAIQKMHNPPLIGGAVQGGMF FKNVPGGFTAMATQDLSTGGIRPAYEVRPDIQGLIIDIQESQRRVEVAFYKDLFQMTALALDGRSQITAREIAERHEEKL MALGPVLESLDHELLQPLIEATFAYMQEADILPEAPEGIVGNPIKVEYISLLAQAQKAIGIGAIERTIGFAGTLAQIKPD VIDMIDGEQMMREFADQVGGPPGILLSPDELREVREAKARAAAQAQAIEAAEPMAGAAKLISEATLNGMDALQRGAAL >Mature_557_residues AAIVNQQLRKTLDYRRQAMNQEFDYWQGHFRELRDAIQPTRGRFEASERRSDSSINKRILDNTAQMALRTLRAGLMSGVT SPSRPWFRLGLRGSTADEAEFEVKDWLHEVQRRMYEVMRGSNIYRMLDTTYGDLGLYGTAANLVVPDFEDVVRGHNLQVG RFRLGEDGNGRVIALYRELKMPVRGIVETWGLDAVSQSVRRAWDTGEYYQTFTICHMIDKRADGDPKAMQSSGRPWASIY WEMDAPSGQFLQIGGHRVKPLLAPRWEQVEGEAWSASSPGMVALGDARSLQVSQEQKAIAIQKMHNPPLIGGAVQGGMFF KNVPGGFTAMATQDLSTGGIRPAYEVRPDIQGLIIDIQESQRRVEVAFYKDLFQMTALALDGRSQITAREIAERHEEKLM ALGPVLESLDHELLQPLIEATFAYMQEADILPEAPEGIVGNPIKVEYISLLAQAQKAIGIGAIERTIGFAGTLAQIKPDV IDMIDGEQMMREFADQVGGPPGILLSPDELREVREAKARAAAQAQAIEAAEPMAGAAKLISEATLNGMDALQRGAAL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61904; Mature: 61773
Theoretical pI: Translated: 5.22; Mature: 5.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAIVNQQLRKTLDYRRQAMNQEFDYWQGHFRELRDAIQPTRGRFEASERRSDSSINKRI CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHH LDNTAQMALRTLRAGLMSGVTSPSRPWFRLGLRGSTADEAEFEVKDWLHEVQRRMYEVMR HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC GSNIYRMLDTTYGDLGLYGTAANLVVPDFEDVVRGHNLQVGRFRLGEDGNGRVIALYREL CCCEEEHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCEEEEEHHH KMPVRGIVETWGLDAVSQSVRRAWDTGEYYQTFTICHMIDKRADGDPKAMQSSGRPWASI CCCHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEE YWEMDAPSGQFLQIGGHRVKPLLAPRWEQVEGEAWSASSPGMVALGDARSLQVSQEQKAI EEEECCCCCCEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCHHHHHH AIQKMHNPPLIGGAVQGGMFFKNVPGGFTAMATQDLSTGGIRPAYEVRPDIQGLIIDIQE HHHHCCCCCCCCCCCCCCEEEECCCCCEEHHHHCCCCCCCCCCCHHCCCCCCEEEEEECC SQRRVEVAFYKDLFQMTALALDGRSQITAREIAERHEEKLMALGPVLESLDHELLQPLIE CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATFAYMQEADILPEAPEGIVGNPIKVEYISLLAQAQKAIGIGAIERTIGFAGTLAQIKPD HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCH VIDMIDGEQMMREFADQVGGPPGILLSPDELREVREAKARAAAQAQAIEAAEPMAGAAKL HHHHCCHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH ISEATLNGMDALQRGAAL HHHHHHHHHHHHHHCCCC >Mature Secondary Structure AAIVNQQLRKTLDYRRQAMNQEFDYWQGHFRELRDAIQPTRGRFEASERRSDSSINKRI CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHCCCHHHHHHH LDNTAQMALRTLRAGLMSGVTSPSRPWFRLGLRGSTADEAEFEVKDWLHEVQRRMYEVMR HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC GSNIYRMLDTTYGDLGLYGTAANLVVPDFEDVVRGHNLQVGRFRLGEDGNGRVIALYREL CCCEEEHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEEEECCCCCCCEEEEEHHH KMPVRGIVETWGLDAVSQSVRRAWDTGEYYQTFTICHMIDKRADGDPKAMQSSGRPWASI CCCHHHHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEE YWEMDAPSGQFLQIGGHRVKPLLAPRWEQVEGEAWSASSPGMVALGDARSLQVSQEQKAI EEEECCCCCCEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCHHHHHH AIQKMHNPPLIGGAVQGGMFFKNVPGGFTAMATQDLSTGGIRPAYEVRPDIQGLIIDIQE HHHHCCCCCCCCCCCCCCEEEECCCCCEEHHHHCCCCCCCCCCCHHCCCCCCEEEEEECC SQRRVEVAFYKDLFQMTALALDGRSQITAREIAERHEEKLMALGPVLESLDHELLQPLIE CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ATFAYMQEADILPEAPEGIVGNPIKVEYISLLAQAQKAIGIGAIERTIGFAGTLAQIKPD HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCH VIDMIDGEQMMREFADQVGGPPGILLSPDELREVREAKARAAAQAQAIEAAEPMAGAAKL HHHHCCHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH ISEATLNGMDALQRGAAL HHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA