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The map label for this gene is yedQ [H]

Identifier: 119386428

GI number: 119386428

Start: 869749

End: 870711

Strand: Direct

Name: yedQ [H]

Synonym: Pden_3720

Alternate gene names: 119386428

Gene position: 869749-870711 (Clockwise)

Preceding gene: 119386427

Following gene: 119386429

Centisome position: 50.27

GC content: 60.85

Gene sequence:

>963_bases
TTGAAGGACGCGGTGATCGACATTCGCGATCTGGCGGCGTTGATGCCCATGCATCTCATGCTGGATCGTGCCGGCGTGAT
GGTTTCCCGGGGAAGGACGCTTGCCAAGCTGTTGCGAGGCGCTGTTCGCCTGGAGGATGTTTTCATTCCAGCCGATAACC
TGGGTCATCGGATATCTTTCAAGGATCTGTTTTCCCATCTGGGCTGCGGCAGGCGGATATTCTTGCAGATGCGTCATCAC
GGGGATGTTTCCCTGCGCGGGCATGGCGTCCATGTCTCGCCGGAACGCGCCATGCTCAACCTGGGGTTTGGGATATGCCT
TTCCTCGGCGGTGCAAAGATTCGGGCTGAACGATTCCGACTTTCCGCCATCGGACCTGGCCATGGAGTTCCTGTTTCTGC
ACGAGGCGAACCGTGCCGCGCTGCTCGAACTGTCCCGCGTCAACATCGGCCTTGAGGAGGCGCGTGAAAGCGCGCAGGTT
TTGTCGATCACCGATCCCCTGACCGGATTGCTGAATCGGCGTGGATTCGACATCGCCTTCTCCAGGGCATTCGATCAGAG
GGACAAAAGACCTTTTGCCCTGGTTCATCTGGATCTCGACCATTTCAAGAATATCAACGACGAATTCGGCCATGCCGCGG
GGGATCGCGTCCTGGTCGGGGTGGCCTCGGCCCTGGCCTCCGAGGTGCGTTCCGGCGACAGGGTTTGCCGCGCGGGAGGC
GACGAGTTCCTGGCGCTGATCTTTGCCGACTGGCCGGCGGCGGATTCCCTGAACATCTGCAAGAGGATCATCGGCAGGAT
CGGTTCCGTCGAGGCCGGTCCCGGCTCGGGCAGGATTTCGGCAAGCATCGGCATCGCGGTTTCCGACAGCAAGCCAGCCG
TGCTGCCCCATCAGCTGTTCGAACTCGCGGATGCAGCGCTTTACCGGGCAAAGATCTCCGGCAGGGGCAGGGTGGCGTTG
TGA

Upstream 100 bases:

>100_bases
TGATCATTTCGGTCGCCCGGGACCGCATCGAGATCGATGTCGTCCTGCCCGATTACTCCGGCCGCCGCCGCTTCGAACTT
TCGCCGATGCAGGTGCGGCC

Downstream 100 bases:

>100_bases
GTTGCGGTGATTGGATGGTACCCGGTGCGGCTGTCGCGCATCGCGAAGCCCGGTCAGGACGCCGCGCTGTCGGTTGCACT
GCCTGTCTTGCGCATGCTGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MKDAVIDIRDLAALMPMHLMLDRAGVMVSRGRTLAKLLRGAVRLEDVFIPADNLGHRISFKDLFSHLGCGRRIFLQMRHH
GDVSLRGHGVHVSPERAMLNLGFGICLSSAVQRFGLNDSDFPPSDLAMEFLFLHEANRAALLELSRVNIGLEEARESAQV
LSITDPLTGLLNRRGFDIAFSRAFDQRDKRPFALVHLDLDHFKNINDEFGHAAGDRVLVGVASALASEVRSGDRVCRAGG
DEFLALIFADWPAADSLNICKRIIGRIGSVEAGPGSGRISASIGIAVSDSKPAVLPHQLFELADAALYRAKISGRGRVAL

Sequences:

>Translated_320_residues
MKDAVIDIRDLAALMPMHLMLDRAGVMVSRGRTLAKLLRGAVRLEDVFIPADNLGHRISFKDLFSHLGCGRRIFLQMRHH
GDVSLRGHGVHVSPERAMLNLGFGICLSSAVQRFGLNDSDFPPSDLAMEFLFLHEANRAALLELSRVNIGLEEARESAQV
LSITDPLTGLLNRRGFDIAFSRAFDQRDKRPFALVHLDLDHFKNINDEFGHAAGDRVLVGVASALASEVRSGDRVCRAGG
DEFLALIFADWPAADSLNICKRIIGRIGSVEAGPGSGRISASIGIAVSDSKPAVLPHQLFELADAALYRAKISGRGRVAL
>Mature_320_residues
MKDAVIDIRDLAALMPMHLMLDRAGVMVSRGRTLAKLLRGAVRLEDVFIPADNLGHRISFKDLFSHLGCGRRIFLQMRHH
GDVSLRGHGVHVSPERAMLNLGFGICLSSAVQRFGLNDSDFPPSDLAMEFLFLHEANRAALLELSRVNIGLEEARESAQV
LSITDPLTGLLNRRGFDIAFSRAFDQRDKRPFALVHLDLDHFKNINDEFGHAAGDRVLVGVASALASEVRSGDRVCRAGG
DEFLALIFADWPAADSLNICKRIIGRIGSVEAGPGSGRISASIGIAVSDSKPAVLPHQLFELADAALYRAKISGRGRVAL

Specific function: Involves in the regulation of cellulose production [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=161, Percent_Identity=38.5093167701863, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=33.3333333333333, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI87082007, Length=175, Percent_Identity=37.7142857142857, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787262, Length=160, Percent_Identity=31.875, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI87081881, Length=170, Percent_Identity=38.2352941176471, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1787541, Length=178, Percent_Identity=34.8314606741573, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787056, Length=156, Percent_Identity=37.1794871794872, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=35.1851851851852, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=33.3333333333333, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788381, Length=179, Percent_Identity=37.4301675977654, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=173, Percent_Identity=34.1040462427746, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 34833; Mature: 34833

Theoretical pI: Translated: 8.06; Mature: 8.06

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDAVIDIRDLAALMPMHLMLDRAGVMVSRGRTLAKLLRGAVRLEDVFIPADNLGHRISF
CCCCEEHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHEEECCCCCCCCCCH
KDLFSHLGCGRRIFLQMRHHGDVSLRGHGVHVSPERAMLNLGFGICLSSAVQRFGLNDSD
HHHHHHCCCCCEEEEEEECCCCEEEECCCEEECHHHHHHHCCHHHHHHHHHHHCCCCCCC
FPPSDLAMEFLFLHEANRAALLELSRVNIGLEEARESAQVLSITDPLTGLLNRRGFDIAF
CCCHHHHHHHHHHHCCCCHHEEEHHHHCCCHHHHHCCCEEEEECCHHHHHHCCCCCCHHH
SRAFDQRDKRPFALVHLDLDHFKNINDEFGHAAGDRVLVGVASALASEVRSGDRVCRAGG
HHHHHHCCCCCEEEEEEEHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCC
DEFLALIFADWPAADSLNICKRIIGRIGSVEAGPGSGRISASIGIAVSDSKPAVLPHQLF
CEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHH
ELADAALYRAKISGRGRVAL
HHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKDAVIDIRDLAALMPMHLMLDRAGVMVSRGRTLAKLLRGAVRLEDVFIPADNLGHRISF
CCCCEEHHHHHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHEEECCCCCCCCCCH
KDLFSHLGCGRRIFLQMRHHGDVSLRGHGVHVSPERAMLNLGFGICLSSAVQRFGLNDSD
HHHHHHCCCCCEEEEEEECCCCEEEECCCEEECHHHHHHHCCHHHHHHHHHHHCCCCCCC
FPPSDLAMEFLFLHEANRAALLELSRVNIGLEEARESAQVLSITDPLTGLLNRRGFDIAF
CCCHHHHHHHHHHHCCCCHHEEEHHHHCCCHHHHHCCCEEEEECCHHHHHHCCCCCCHHH
SRAFDQRDKRPFALVHLDLDHFKNINDEFGHAAGDRVLVGVASALASEVRSGDRVCRAGG
HHHHHHCCCCCEEEEEEEHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCC
DEFLALIFADWPAADSLNICKRIIGRIGSVEAGPGSGRISASIGIAVSDSKPAVLPHQLF
CEEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHH
ELADAALYRAKISGRGRVAL
HHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA