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The map label for this gene is alr [H]

Identifier: 119386397

GI number: 119386397

Start: 838262

End: 839359

Strand: Direct

Name: alr [H]

Synonym: Pden_3689

Alternate gene names: 119386397

Gene position: 838262-839359 (Clockwise)

Preceding gene: 119386390

Following gene: 119386398

Centisome position: 48.45

GC content: 70.77

Gene sequence:

>1098_bases
ATGCTAGCATCCCCCGCTGCAAATAGCAAAAATGCTAAAACCCTTGACGCCGCGCATGGCAGGAGCCATGCCGCTGCCAT
GGGACTCGTCATCGATATTCCGGCCATCGTGGCCAACTGGAAGGCGCTTGCGGCCAGGGCCCCGGGCGCGCGGGCGGCTG
CGGTCGTCAAGGCCGATGCTTATGGGCTGGGCGCGGATCGCGTCGCGCCGCCGCTTTACGCGGCGGGCGCGCGGGATTTC
TTCGTCGCGCTGGCCTCCGAGGGGCGGGCGATCCGGCCGCTTCTGCCCGATGATGCGCGCATCTTCGTGCTGTCCGGCCA
TATGGAGGGCGCGGATCTGGCCGGGCTGGTTCCGCTGCTGAACAGTCCCGAGCAGTTCTTCCGCGACCGTGCGCTGCGTC
CGCGCGGTCCCTTCGGCATCCAGCTTGACAGCGGCATGAACCGGCTGGGCATCGAGCCCGGCGAATGGGCCGCCATCCGG
GCCGAGGCGCTGGCCGCGCGCCCGGCGCTGATCATGTCGCATCTGGCTTGCGCAGACGAGCCGGACCACCCGGCCAATGC
CCAGCAGCTCGCCGCCTTCCGCGCGATGACCGAGGGCGTGACCGTGCCGCGTTCGCTGGCGGCCACGGGCGGCATCCTGC
TGGGGCCGGATTACCATTTCGACCTGGTGCGGCCCGGCATCGGGCTTTACGGCGGCGAGCCCTTTGCCGATGCGCGGCCC
GTGGTGACGCTGGCGCTGCCGGTGATCCAGGTGCGCGAGGTGAAGCCCGGAGAATCCGTGGGCTACGGCTATGCCTGGAC
CGCCGCGCGCCCGTCGCGCGTGGCGACGGTGGCGGCGGGCTATGCCGACGGGCTGGCACGGGCGCTGGCGCGGGACGGCA
AGCTGACGCTTTGGGCCGGCGAGCGCGGGGTGCCGGTGATCGGCCGCATCTCGATGGACCTGATCACCGTCGACGTGACC
GATCTGCCCGACGTGCCGGCGGCGCTGGAGATCCTGAACGCGCGGCAGGGCGTCGATGACCTGGCGGCGCTGTCGGGCAC
CATCGGCTATGAGATCCTGACCTCGCTGGGGCGGCGCTACGAGCGGACCTGGCTTTGA

Upstream 100 bases:

>100_bases
TCGCCGAGGATGTCCTTCATGAGCCGTCTCCCTTTGGGTTTGCAGCAAACTATAGGCTTGCTGCGGGTGCGGGAAGCGGA
AAGGCGAATATTTGCAAAAT

Downstream 100 bases:

>100_bases
ACCCGATCCGGCTGACCGGCAGGGCGGCGATCGGCCTGACCCGGATGACCGGGCAGGTGACGATCTTTGCCGCACGCGGT
CTGGCCCGGGTCGGGCAACA

Product: alanine racemase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MLASPAANSKNAKTLDAAHGRSHAAAMGLVIDIPAIVANWKALAARAPGARAAAVVKADAYGLGADRVAPPLYAAGARDF
FVALASEGRAIRPLLPDDARIFVLSGHMEGADLAGLVPLLNSPEQFFRDRALRPRGPFGIQLDSGMNRLGIEPGEWAAIR
AEALAARPALIMSHLACADEPDHPANAQQLAAFRAMTEGVTVPRSLAATGGILLGPDYHFDLVRPGIGLYGGEPFADARP
VVTLALPVIQVREVKPGESVGYGYAWTAARPSRVATVAAGYADGLARALARDGKLTLWAGERGVPVIGRISMDLITVDVT
DLPDVPAALEILNARQGVDDLAALSGTIGYEILTSLGRRYERTWL

Sequences:

>Translated_365_residues
MLASPAANSKNAKTLDAAHGRSHAAAMGLVIDIPAIVANWKALAARAPGARAAAVVKADAYGLGADRVAPPLYAAGARDF
FVALASEGRAIRPLLPDDARIFVLSGHMEGADLAGLVPLLNSPEQFFRDRALRPRGPFGIQLDSGMNRLGIEPGEWAAIR
AEALAARPALIMSHLACADEPDHPANAQQLAAFRAMTEGVTVPRSLAATGGILLGPDYHFDLVRPGIGLYGGEPFADARP
VVTLALPVIQVREVKPGESVGYGYAWTAARPSRVATVAAGYADGLARALARDGKLTLWAGERGVPVIGRISMDLITVDVT
DLPDVPAALEILNARQGVDDLAALSGTIGYEILTSLGRRYERTWL
>Mature_365_residues
MLASPAANSKNAKTLDAAHGRSHAAAMGLVIDIPAIVANWKALAARAPGARAAAVVKADAYGLGADRVAPPLYAAGARDF
FVALASEGRAIRPLLPDDARIFVLSGHMEGADLAGLVPLLNSPEQFFRDRALRPRGPFGIQLDSGMNRLGIEPGEWAAIR
AEALAARPALIMSHLACADEPDHPANAQQLAAFRAMTEGVTVPRSLAATGGILLGPDYHFDLVRPGIGLYGGEPFADARP
VVTLALPVIQVREVKPGESVGYGYAWTAARPSRVATVAAGYADGLARALARDGKLTLWAGERGVPVIGRISMDLITVDVT
DLPDVPAALEILNARQGVDDLAALSGTIGYEILTSLGRRYERTWL

Specific function: Provides the D-alanine required for cell wall biosynthesis [H]

COG id: COG0787

COG function: function code M; Alanine racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the alanine racemase family [H]

Homologues:

Organism=Escherichia coli, GI1790487, Length=361, Percent_Identity=36.2880886426593, Blast_Score=164, Evalue=6e-42,
Organism=Escherichia coli, GI1787439, Length=350, Percent_Identity=36.2857142857143, Blast_Score=160, Evalue=1e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000821
- InterPro:   IPR009006
- InterPro:   IPR011079
- InterPro:   IPR001608 [H]

Pfam domain/function: PF00842 Ala_racemase_C; PF01168 Ala_racemase_N [H]

EC number: =5.1.1.1 [H]

Molecular weight: Translated: 38293; Mature: 38293

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS00395 ALANINE_RACEMASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLASPAANSKNAKTLDAAHGRSHAAAMGLVIDIPAIVANWKALAARAPGARAAAVVKADA
CCCCCCCCCCCCCEEHHHCCCCHHHHHHHEEEHHHHHHHHHHHHHCCCCCCEEEEEEECC
YGLGADRVAPPLYAAGARDFFVALASEGRAIRPLLPDDARIFVLSGHMEGADLAGLVPLL
CCCCCHHCCCCHHHCCCHHEEEEEECCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHC
NSPEQFFRDRALRPRGPFGIQLDSGMNRLGIEPGEWAAIRAEALAARPALIMSHLACADE
CCHHHHHHHCCCCCCCCCCEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDHPANAQQLAAFRAMTEGVTVPRSLAATGGILLGPDYHFDLVRPGIGLYGGEPFADARP
CCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCEEECCCCCEEEECCCCCCCCCCCCCCCCC
VVTLALPVIQVREVKPGESVGYGYAWTAARPSRVATVAAGYADGLARALARDGKLTLWAG
EEEEEECCEEEEECCCCCCCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEC
ERGVPVIGRISMDLITVDVTDLPDVPAALEILNARQGVDDLAALSGTIGYEILTSLGRRY
CCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ERTWL
HHCCC
>Mature Secondary Structure
MLASPAANSKNAKTLDAAHGRSHAAAMGLVIDIPAIVANWKALAARAPGARAAAVVKADA
CCCCCCCCCCCCCEEHHHCCCCHHHHHHHEEEHHHHHHHHHHHHHCCCCCCEEEEEEECC
YGLGADRVAPPLYAAGARDFFVALASEGRAIRPLLPDDARIFVLSGHMEGADLAGLVPLL
CCCCCHHCCCCHHHCCCHHEEEEEECCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHC
NSPEQFFRDRALRPRGPFGIQLDSGMNRLGIEPGEWAAIRAEALAARPALIMSHLACADE
CCHHHHHHHCCCCCCCCCCEEECCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
PDHPANAQQLAAFRAMTEGVTVPRSLAATGGILLGPDYHFDLVRPGIGLYGGEPFADARP
CCCCCCHHHHHHHHHHHCCCCCCHHHHHCCCEEECCCCCEEEECCCCCCCCCCCCCCCCC
VVTLALPVIQVREVKPGESVGYGYAWTAARPSRVATVAAGYADGLARALARDGKLTLWAG
EEEEEECCEEEEECCCCCCCCCCEEEECCCCCCEEEEHHHHHHHHHHHHHCCCCEEEEEC
ERGVPVIGRISMDLITVDVTDLPDVPAALEILNARQGVDDLAALSGTIGYEILTSLGRRY
CCCCCEEEEEEEEEEEEEECCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
ERTWL
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA