| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
Click here to switch to the map view.
The map label for this gene is 119386368
Identifier: 119386368
GI number: 119386368
Start: 810561
End: 811430
Strand: Direct
Name: 119386368
Synonym: Pden_3660
Alternate gene names: NA
Gene position: 810561-811430 (Clockwise)
Preceding gene: 119386367
Following gene: 119386369
Centisome position: 46.85
GC content: 69.54
Gene sequence:
>870_bases ATGACGCAGATCATCCGCTCGCTCGACGAGATTGCGCCGAATTACGACGTTCTCTTCTGTGATCTCTGGGGCTGCCTGCA CAATGGCGTCGCGGCCTTTCCGGCCGCCGTCGCCGCCTTGCAGGACTTTCGCGCCCAGGGCGGGCGGGTGGTGCTGCTGA CCAACGCGCCGCGGCCGCAGCAATACGTGGCCGCGCAGCTGGACCGCATGGGTGTGCCGCGCGACGCCTGGGACGCCATC GTCAGCTCGGGCGATGCGGCGCAGGACGCGATGTTCGCGGGCGCCGTCGGCCGCCGGGTCTGGGCCATCGCCCAGCCCAA GGACGAGGGCTTCTTCACCGATATCCCCGAGGAGTGGCGCGACGCCCCGCCGATCACCCGCGTGCCGCTGGACGAGGCCG AGGGTATCGTCTGCTGCGGGTTGTTCGACGACCTGACCGAAGTGCCCGAGGACTATCGCGGCCGGCTGATGCTGGCGCGC GAACGCGGGCTCACGCTGCTTTGCGCCAATCCCGACGTGGTGGTGGACATGGGCGAGAAGCGGCTTTACTGCGCCGGCGC CCTGGCCGAGCTTTACGAGGATCTGGGCGGCACCTCGCTTTATTTCGGCAAGCCGCATCCGCCGATCTACGACCTCGCGC GCCGCCGGCTGGGGCTGGACGACAATGCCCGCATCCTGGCCATCGGCGACGGCATCGCCACCGACATAGCCGGCGCGGCG GGCGAGGGGCTGGATGCGCTGTTCATCACCGGCGGCCTTGCCTTCGACCAGTTCGGCCCGGATGTGGAAAACCCCGATCC GGCGCGGCTTGCCGAATGGCTGGCGCTGCGCGCCCAGGATCCGGCCTATAGCATCGGCCGGCTGCGCTGA
Upstream 100 bases:
>100_bases CAACGCCACGGTTTCGGGCGACAGCGTGGTGCTGCCCGGCGTCATGTCGCGCAAGAAGCAGATCATCCCGGCTCTGGCCG TCTGACCCGAGGGCCGTTTC
Downstream 100 bases:
>100_bases ACGGTTCGGTAACAATCAGTCTCCCCAGCTGGTGATGGCGTTATTTTGTTGCGCGCCCGTGGTTTTGCTGCTATGCAGCA TGAAGCCACTCACCGGGAGC
Product: HAD family hydrolase
Products: NA
Alternate protein names: HAD-Superfamily Subfamily IIA Hydrolase; HAD-Superfamily Hydrolase; HAD-Superfamily Hydrolase Subfamily IIA; HAD-Superfamily Subfamily IIA Hydrolase TIGR; HAD-Superfamily Subfamily IIA Hydrolase Like Protein; HAD Superfamily Hydrolase; Hydrolase; Haloacid Dehalogenase-Like Hydrolase; Had-Superfamily Subfamily IIa Hydrolase Like Protein; Sugar Phosphatases Of HAD Superfamily; Haloacid Dehalogenase-Like Family Hydrolase; Hydrolase Haloacid Dehalogenase-Like Family; Hydrolase IIA; HAD Family Sugar Phosphatase; Sugar Phosphatase; HAD-Superfamily Subfamily IIA Hydrolase-Like Protein
Number of amino acids: Translated: 289; Mature: 288
Protein sequence:
>289_residues MTQIIRSLDEIAPNYDVLFCDLWGCLHNGVAAFPAAVAALQDFRAQGGRVVLLTNAPRPQQYVAAQLDRMGVPRDAWDAI VSSGDAAQDAMFAGAVGRRVWAIAQPKDEGFFTDIPEEWRDAPPITRVPLDEAEGIVCCGLFDDLTEVPEDYRGRLMLAR ERGLTLLCANPDVVVDMGEKRLYCAGALAELYEDLGGTSLYFGKPHPPIYDLARRRLGLDDNARILAIGDGIATDIAGAA GEGLDALFITGGLAFDQFGPDVENPDPARLAEWLALRAQDPAYSIGRLR
Sequences:
>Translated_289_residues MTQIIRSLDEIAPNYDVLFCDLWGCLHNGVAAFPAAVAALQDFRAQGGRVVLLTNAPRPQQYVAAQLDRMGVPRDAWDAI VSSGDAAQDAMFAGAVGRRVWAIAQPKDEGFFTDIPEEWRDAPPITRVPLDEAEGIVCCGLFDDLTEVPEDYRGRLMLAR ERGLTLLCANPDVVVDMGEKRLYCAGALAELYEDLGGTSLYFGKPHPPIYDLARRRLGLDDNARILAIGDGIATDIAGAA GEGLDALFITGGLAFDQFGPDVENPDPARLAEWLALRAQDPAYSIGRLR >Mature_288_residues TQIIRSLDEIAPNYDVLFCDLWGCLHNGVAAFPAAVAALQDFRAQGGRVVLLTNAPRPQQYVAAQLDRMGVPRDAWDAIV SSGDAAQDAMFAGAVGRRVWAIAQPKDEGFFTDIPEEWRDAPPITRVPLDEAEGIVCCGLFDDLTEVPEDYRGRLMLARE RGLTLLCANPDVVVDMGEKRLYCAGALAELYEDLGGTSLYFGKPHPPIYDLARRRLGLDDNARILAIGDGIATDIAGAAG EGLDALFITGGLAFDQFGPDVENPDPARLAEWLALRAQDPAYSIGRLR
Specific function: Unknown
COG id: COG0647
COG function: function code G; Predicted sugar phosphatases of the HAD superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31346; Mature: 31215
Theoretical pI: Translated: 4.22; Mature: 4.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQIIRSLDEIAPNYDVLFCDLWGCLHNGVAAFPAAVAALQDFRAQGGRVVLLTNAPRPQ CHHHHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH QYVAAQLDRMGVPRDAWDAIVSSGDAAQDAMFAGAVGRRVWAIAQPKDEGFFTDIPEEWR HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHC DAPPITRVPLDEAEGIVCCGLFDDLTEVPEDYRGRLMLARERGLTLLCANPDVVVDMGEK CCCCCCCCCCCCCCCEEEECCHHHHHHCCHHHCCCEEEEECCCCEEEECCCCEEEECCCC RLYCAGALAELYEDLGGTSLYFGKPHPPIYDLARRRLGLDDNARILAIGDGIATDIAGAA EEEHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCC GEGLDALFITGGLAFDQFGPDVENPDPARLAEWLALRAQDPAYSIGRLR CCCCEEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure TQIIRSLDEIAPNYDVLFCDLWGCLHNGVAAFPAAVAALQDFRAQGGRVVLLTNAPRPQ HHHHHHHHHHCCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCH QYVAAQLDRMGVPRDAWDAIVSSGDAAQDAMFAGAVGRRVWAIAQPKDEGFFTDIPEEWR HHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCHHHC DAPPITRVPLDEAEGIVCCGLFDDLTEVPEDYRGRLMLARERGLTLLCANPDVVVDMGEK CCCCCCCCCCCCCCCEEEECCHHHHHHCCHHHCCCEEEEECCCCEEEECCCCEEEECCCC RLYCAGALAELYEDLGGTSLYFGKPHPPIYDLARRRLGLDDNARILAIGDGIATDIAGAA EEEHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCC GEGLDALFITGGLAFDQFGPDVENPDPARLAEWLALRAQDPAYSIGRLR CCCCEEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA