Definition Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession NC_008687
Length 1,730,097

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The map label for this gene is yetM [H]

Identifier: 119386321

GI number: 119386321

Start: 768541

End: 769713

Strand: Direct

Name: yetM [H]

Synonym: Pden_3613

Alternate gene names: 119386321

Gene position: 768541-769713 (Clockwise)

Preceding gene: 119386319

Following gene: 119386322

Centisome position: 44.42

GC content: 73.4

Gene sequence:

>1173_bases
ATGAGCTACAGGATCGCCATCGCGGGCGCCGGGATCGGCGGCCTCGCCGCTGCCGCGCTGCTGGCCCGCGAGGGCCACGA
CGTCACTCTGTTCGAGCGTTTCGCCGCGCCGCGTCCCCTGGGCTCGGGGCTGGTGGTCCAGCCGGTCGGGCTGGCCGTGC
TGGACCGGATCGGCGCGGGCGGGGACACGCGCCGCCTCTCCAGCCCCATCGCCCGCATGCTCGGGCACGAGGCGCGGGGC
AGCAAGGTGCTGGACGTCTCCTATCCCGTCGCCGCGCCGGGCCGCGGCATCCACCGCGCCACGTTGTTCCAACTGCTCTG
GGACCGGGTTGTTGCGCTCGGCCTGCCGGTGGTGACCTCGGCCGAGATCGTCTCGGCCGGCCCGGACGGGGCCGGGCGGC
GCCTCATGCTGGCCGACGGGCGCGATTTCGGCCCTTTCGACCTGGTCGTCGATGCCAGCGGCGCGGGTTCGCGACTGTCG
CCCCTGCAGGCGCGGCCGCTGGGCTATGGCGCGATCTGGGGCACGGTGCCCTGGCCCGAAACGGATTTCCCGCGCAGCGA
ACTGTGGCAGCGTTACCGCGCCGCCAGCCGGATGGCGGGCGTGCTGCCCATCGGCTGCCTGCCCGGCGATCCGACGCCCC
GCGCCGCCGTCTTCTGGTCCATGCCGCTGGCCGAACTGGACCGCTGGCCGCAGGCGCCGATGGCCCACTGGCGCGACGGG
GTTGCCGCGCTCTGGCCGCAGATGGCGCCGTTCCTGGAAACCATCCGCGAGAATGCGCAGATGACCCAGGCGCGCTACAG
CCACGGCACCCTGCGCCGCCCCTGGGCGCCGGGCCTGGTCCATATCGGCGACGCCGCGCATCGCGCCAGCCCGCAACTGG
GGCAGGGGGCGAACATGGCGCTGCTCGATGCCTTCGCGCTGGCCCATGCGCTGCGCCGTCCGCTCGAAGAGGCCCTGCCG
GATTACGCCGCCATGCGCCGCTGGCATGTCCGTATCTACCAGGGGATGAGCGCCGCCTTCACCCCGATGTATCAGTCGGG
CAGCCGTAGCCTGCCCTGGCTGCGCGACCTGGTGCTCGCGCCGCTCTCTACCTTGCCGCTGCTGCGGGGCGGGCTGACGC
ATCTTGTCGCGGGCACCATGATCCCGCCGCTTTCGGGGGTGCGCGATCCGTGA

Upstream 100 bases:

>100_bases
AAGATCCCGGCCCTGCTGAACATGCGCGGGTTATAGGAAACCGCCCGGACCCCTGCAAGCGCGGCTTGCACCTGCGGCCG
GCCTGGGGCAGCAAGCGGCC

Downstream 100 bases:

>100_bases
CGGGCTTGCAGGACCGGCCGTGCGGGTCCATATCCGCCGCATGATCCCGCCGCGCTTTGACGTCACCCCCGAACAGATCG
ACCGCGTCGTCGCCACCTTC

Product: monooxygenase, FAD-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 389

Protein sequence:

>390_residues
MSYRIAIAGAGIGGLAAAALLAREGHDVTLFERFAAPRPLGSGLVVQPVGLAVLDRIGAGGDTRRLSSPIARMLGHEARG
SKVLDVSYPVAAPGRGIHRATLFQLLWDRVVALGLPVVTSAEIVSAGPDGAGRRLMLADGRDFGPFDLVVDASGAGSRLS
PLQARPLGYGAIWGTVPWPETDFPRSELWQRYRAASRMAGVLPIGCLPGDPTPRAAVFWSMPLAELDRWPQAPMAHWRDG
VAALWPQMAPFLETIRENAQMTQARYSHGTLRRPWAPGLVHIGDAAHRASPQLGQGANMALLDAFALAHALRRPLEEALP
DYAAMRRWHVRIYQGMSAAFTPMYQSGSRSLPWLRDLVLAPLSTLPLLRGGLTHLVAGTMIPPLSGVRDP

Sequences:

>Translated_390_residues
MSYRIAIAGAGIGGLAAAALLAREGHDVTLFERFAAPRPLGSGLVVQPVGLAVLDRIGAGGDTRRLSSPIARMLGHEARG
SKVLDVSYPVAAPGRGIHRATLFQLLWDRVVALGLPVVTSAEIVSAGPDGAGRRLMLADGRDFGPFDLVVDASGAGSRLS
PLQARPLGYGAIWGTVPWPETDFPRSELWQRYRAASRMAGVLPIGCLPGDPTPRAAVFWSMPLAELDRWPQAPMAHWRDG
VAALWPQMAPFLETIRENAQMTQARYSHGTLRRPWAPGLVHIGDAAHRASPQLGQGANMALLDAFALAHALRRPLEEALP
DYAAMRRWHVRIYQGMSAAFTPMYQSGSRSLPWLRDLVLAPLSTLPLLRGGLTHLVAGTMIPPLSGVRDP
>Mature_389_residues
SYRIAIAGAGIGGLAAAALLAREGHDVTLFERFAAPRPLGSGLVVQPVGLAVLDRIGAGGDTRRLSSPIARMLGHEARGS
KVLDVSYPVAAPGRGIHRATLFQLLWDRVVALGLPVVTSAEIVSAGPDGAGRRLMLADGRDFGPFDLVVDASGAGSRLSP
LQARPLGYGAIWGTVPWPETDFPRSELWQRYRAASRMAGVLPIGCLPGDPTPRAAVFWSMPLAELDRWPQAPMAHWRDGV
AALWPQMAPFLETIRENAQMTQARYSHGTLRRPWAPGLVHIGDAAHRASPQLGQGANMALLDAFALAHALRRPLEEALPD
YAAMRRWHVRIYQGMSAAFTPMYQSGSRSLPWLRDLVLAPLSTLPLLRGGLTHLVAGTMIPPLSGVRDP

Specific function: Unknown

COG id: COG0654

COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002938
- InterPro:   IPR003042 [H]

Pfam domain/function: PF01494 FAD_binding_3 [H]

EC number: NA

Molecular weight: Translated: 41905; Mature: 41774

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYRIAIAGAGIGGLAAAALLAREGHDVTLFERFAAPRPLGSGLVVQPVGLAVLDRIGAG
CCEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCEECHHHHHHHHHHCCC
GDTRRLSSPIARMLGHEARGSKVLDVSYPVAAPGRGIHRATLFQLLWDRVVALGLPVVTS
CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
AEIVSAGPDGAGRRLMLADGRDFGPFDLVVDASGAGSRLSPLQARPLGYGAIWGTVPWPE
HHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC
TDFPRSELWQRYRAASRMAGVLPIGCLPGDPTPRAAVFWSMPLAELDRWPQAPMAHWRDG
CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEECCCHHHHHCCCCCCHHHHHCC
VAALWPQMAPFLETIRENAQMTQARYSHGTLRRPWAPGLVHIGDAAHRASPQLGQGANMA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHCCCCCCCCCCHH
LLDAFALAHALRRPLEEALPDYAAMRRWHVRIYQGMSAAFTPMYQSGSRSLPWLRDLVLA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHCHHHHCCCCCCHHHHHHHHH
PLSTLPLLRGGLTHLVAGTMIPPLSGVRDP
HHHHHHHHHCCHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
SYRIAIAGAGIGGLAAAALLAREGHDVTLFERFAAPRPLGSGLVVQPVGLAVLDRIGAG
CEEEEEECCCHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCCCCEECHHHHHHHHHHCCC
GDTRRLSSPIARMLGHEARGSKVLDVSYPVAAPGRGIHRATLFQLLWDRVVALGLPVVTS
CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
AEIVSAGPDGAGRRLMLADGRDFGPFDLVVDASGAGSRLSPLQARPLGYGAIWGTVPWPE
HHHHCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC
TDFPRSELWQRYRAASRMAGVLPIGCLPGDPTPRAAVFWSMPLAELDRWPQAPMAHWRDG
CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEECCCHHHHHCCCCCCHHHHHCC
VAALWPQMAPFLETIRENAQMTQARYSHGTLRRPWAPGLVHIGDAAHRASPQLGQGANMA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCHHHHCCCCCCCCCCHH
LLDAFALAHALRRPLEEALPDYAAMRRWHVRIYQGMSAAFTPMYQSGSRSLPWLRDLVLA
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHCHHHHCCCCCCHHHHHHHHH
PLSTLPLLRGGLTHLVAGTMIPPLSGVRDP
HHHHHHHHHCCHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]