| Definition | Paracoccus denitrificans PD1222 chromosome 2, complete sequence. |
|---|---|
| Accession | NC_008687 |
| Length | 1,730,097 |
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The map label for this gene is 119386312
Identifier: 119386312
GI number: 119386312
Start: 754198
End: 757080
Strand: Direct
Name: 119386312
Synonym: Pden_3604
Alternate gene names: NA
Gene position: 754198-757080 (Clockwise)
Preceding gene: 119386311
Following gene: 119386313
Centisome position: 43.59
GC content: 65.24
Gene sequence:
>2883_bases ATGCAGATCATAATCTGGGGTGCCGACCAGCAGGTCACCGCCGTTAATGTGCCGCTGATCAACCTGCCTATCCCGAATCT GTCGGAGATGGCCGCATTGCAACAGCAGGTTGCGGAGGACGCGCAGGCCGCTGCGGATTCTGCCGCGACCGTGGCGGGCA TGCAGGACGATATTGACCTCGCTGTCGAGGTTTCAGGCGAGGCCGACGCCAAAGCCACCGCCGCGCAACTGCCGCCGTTC GTGCCCTTCGCGACCCGCGCCGACATTGCGCTGACGAACCTTGGCGACGTGCGCCGCATCAGTGTTGCCGGCGTCGGCGA TTACCGTCAGGCAGTCGGCCCCATCGCCTACACCCCGGCTGCCATCTCGGCCGATGGGATCATGCTGGTCCCGGATGGGC CGATCACTCCGCAGCATTTCGGGGCGCGGGCGGATCTGGAATACGAGTTGCAGCAGATCCGGGGTTCGGGCGGGGTCCTG ACCGACGCTTATGGGCTGGTTCGCACGGGCGGGACCAATGACCGGGCTGCCATCGTCGCCGCCGATTTCTACGCTGCCCT GATGGATCAGCCGCTGGTGTTCCCGCCCGGCCGCTATTTCATCGACGGCACCATCCGGCCGACCACGCGCTGGCTATCCG AAGATGATTTTGGCGCGGTCCTCTGGCTCAACTACAACGAGGACGAGACGGGCCGGTCCACCTCGGGGCTTGAGTTCTTC AAGAGCGGCACCGGGCTGGGCGTGATCGGAAACCACGGGTTCCGCCTGATCGGGCAGTTCTCGCGCACGACGCCGAAAGA GGGCGGCAACGGCCAGCTTGGCACGGTCTGGCGCATCAACGACTACTACATGCCGCATGAACAGCCGGTGCTGGTCGGCA TGCATATCCGGGCGAAGGTGGTGCGCGCCGCACTGCAACGCAACGAGAGCGGCACCATCACCCAGCGGTCCATCCCCTCG ATCCAAGGGGCCGTTATGGCCGGGGTCGAGCATTCCTATTTCGAAATCGGAGTGTGGGGCCGGACCAACGTCGCCAGCAC GGCGCCGCTGCTGGTCCATTGGGGCTGCCGCTACGCCCCCGAGAGCCTGGACGACACGCTCGGGCCTGACAAGACGCTGG CACGGATCATCGAAACCTACCACGCCTGCTGGATCAAGGTCACTTACATCACGCCGCTGGATAATCGGGACGGGCACAAT TTCTTGCAGCCGTTCGATCTGGCCTGCACCGGCCCGGCCGATGTTTACGGCGTGGATAGCATCGGCTTGGCCGGCGGCGC GACCGGGGTCAACTTCGGCGGGGCGCTTGGGTCCATCTCCTGCGGCGATATCTGCGACGCCTATGCCATCCCGCGCCACA AGGCGGTGCTGTGGAAGGGCATCAACATCTACAGCCCGAAAGCTTCCGGCGTGAACTCGGCCCTCGGGTCAGAACAGCTT TACATCAAGGGCATGGGCACGGCGAAATATCCGGGCGACGTTGAGCCGGGCACAGATCTGCCGATCCAGCGCCAGTTGCG CGCGGAAATCAACGTCTACAATCCGCAGTGCAGCTATGCCGAGGACGCCGTTCCCGGCGATCAGCGCACCGCCTTCATCG ACACGGTGTTCGGCAGCGTCACCATCCAGAACCTCAGTTCGTTCGGTGCACATCGCGCCATCGAAATCGAGGATACCTGG GGCCGGGTGCTGGTGGACGGCGTGTCAGGCGACGGCGCCACGCTGGTCAACTTCGCCGGGTCGGTCGATCTGCTGGATCA GCGTATGGACCGCCGCAACGCCCAGAACGCCGGGGACAGCAGCAACTATGCGTTCGGCTGGGGCAGCCCGAACAGCCGGG CGGTGGAGATTGCCGGCGCTCTGACCACCATCGGCACGGTGGCGGCGGACCTGACCATCTCGGACAACATCATCCCGCTT GCCGCGCCCACCTCTGCGCAGGTGCCCACGGGCGTCAAACTGCGCATCGGCAATCAGGTGGTGCAGTCCACGCGCATGCA TCGCGTCGGGGCCGTGCAGCTATCCGTCACGCCGCTGTCGGCCCCCATCCTGACCGGCGCCACCGTCATCGCGGATCGCC GCTCCAAGGTCGGCAGGTTGGAACTGGCAACGCGGTCCAGCTTCCATGCGCTGGACGTCAACAACAGCGACGTGGCCGAC CTGGACATGACCCGCATGGCCTATGCCGGCCGCAATGCCGTTCGGCTGCGCGGTGACAGCGTGGTCACGGTCAACGGCGG GCGCTTGCCGATCATGGGCCGGGCAGGGGGTGATATGCGCACCTTCCGCGCCGAGGGCACGTCCCGCGTCAACCTGAACG GCGTCTACATTCCTGATAACCCGGCCATCACGACGCATGTCGCCCTGATCGGCGGCGCGTCCAGTTTGTCGGTGCGGGAT TGCATCGTAGAGAACCCCGCCACCATCGTCGCCTATGGCTCGCGCGGGCAGGTGTCGTGGGCCGGCAACCGCAAGCCGGA CGGTAGCAGGGCTGTCTGGGGCGGCTACGAGGCCACCTGGACCCCGTCTCTGCTGATCGGCGGTGTTGATGCCGGGATCA CCTACGGAACGCGGCAAGGCAGCTTTGTCGTGCAGGAAGATGGAATGGTGACGGTGCGGTTCGACTTCACCTTGACCAGC AAGGGCACGGAGACGGGCATCCTGACGTTGGGCGGCATACCGTTCGACTGCAACACACCCAACGCGTTCCCGATCTTCAT GCACTTCGCGACCCTGACGGATGGCACCCCGCTGATTTCCACCAACGGCAGCGTGTGGACCCTTAGCCGCCAGACCACCA CGGGCGTTGCGTCCCTGACGGAAACCCAGATCGGGGACACGACGCGCTTCCGTGGCTCGCTCACCTATCGGACGACGCTT TGA
Upstream 100 bases:
>100_bases CTTACAAATTTGACGTGTGGGTAATCAAAGGCGGTGAAAAGCTGCCCATTCCCGCTTCGGTCAATATCCCGCTGCATACT ATCGAGGGGGTCACGCACTA
Downstream 100 bases:
>100_bases CCCCCACGACAATACGGAGACGGCATGGAGCCTGATTACCGGCGCGATCTGGCGCGCATCGAATCCAAGCTGGACCGCGT GGAGACGGCCATCATCAGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 960; Mature: 960
Protein sequence:
>960_residues MQIIIWGADQQVTAVNVPLINLPIPNLSEMAALQQQVAEDAQAAADSAATVAGMQDDIDLAVEVSGEADAKATAAQLPPF VPFATRADIALTNLGDVRRISVAGVGDYRQAVGPIAYTPAAISADGIMLVPDGPITPQHFGARADLEYELQQIRGSGGVL TDAYGLVRTGGTNDRAAIVAADFYAALMDQPLVFPPGRYFIDGTIRPTTRWLSEDDFGAVLWLNYNEDETGRSTSGLEFF KSGTGLGVIGNHGFRLIGQFSRTTPKEGGNGQLGTVWRINDYYMPHEQPVLVGMHIRAKVVRAALQRNESGTITQRSIPS IQGAVMAGVEHSYFEIGVWGRTNVASTAPLLVHWGCRYAPESLDDTLGPDKTLARIIETYHACWIKVTYITPLDNRDGHN FLQPFDLACTGPADVYGVDSIGLAGGATGVNFGGALGSISCGDICDAYAIPRHKAVLWKGINIYSPKASGVNSALGSEQL YIKGMGTAKYPGDVEPGTDLPIQRQLRAEINVYNPQCSYAEDAVPGDQRTAFIDTVFGSVTIQNLSSFGAHRAIEIEDTW GRVLVDGVSGDGATLVNFAGSVDLLDQRMDRRNAQNAGDSSNYAFGWGSPNSRAVEIAGALTTIGTVAADLTISDNIIPL AAPTSAQVPTGVKLRIGNQVVQSTRMHRVGAVQLSVTPLSAPILTGATVIADRRSKVGRLELATRSSFHALDVNNSDVAD LDMTRMAYAGRNAVRLRGDSVVTVNGGRLPIMGRAGGDMRTFRAEGTSRVNLNGVYIPDNPAITTHVALIGGASSLSVRD CIVENPATIVAYGSRGQVSWAGNRKPDGSRAVWGGYEATWTPSLLIGGVDAGITYGTRQGSFVVQEDGMVTVRFDFTLTS KGTETGILTLGGIPFDCNTPNAFPIFMHFATLTDGTPLISTNGSVWTLSRQTTTGVASLTETQIGDTTRFRGSLTYRTTL
Sequences:
>Translated_960_residues MQIIIWGADQQVTAVNVPLINLPIPNLSEMAALQQQVAEDAQAAADSAATVAGMQDDIDLAVEVSGEADAKATAAQLPPF VPFATRADIALTNLGDVRRISVAGVGDYRQAVGPIAYTPAAISADGIMLVPDGPITPQHFGARADLEYELQQIRGSGGVL TDAYGLVRTGGTNDRAAIVAADFYAALMDQPLVFPPGRYFIDGTIRPTTRWLSEDDFGAVLWLNYNEDETGRSTSGLEFF KSGTGLGVIGNHGFRLIGQFSRTTPKEGGNGQLGTVWRINDYYMPHEQPVLVGMHIRAKVVRAALQRNESGTITQRSIPS IQGAVMAGVEHSYFEIGVWGRTNVASTAPLLVHWGCRYAPESLDDTLGPDKTLARIIETYHACWIKVTYITPLDNRDGHN FLQPFDLACTGPADVYGVDSIGLAGGATGVNFGGALGSISCGDICDAYAIPRHKAVLWKGINIYSPKASGVNSALGSEQL YIKGMGTAKYPGDVEPGTDLPIQRQLRAEINVYNPQCSYAEDAVPGDQRTAFIDTVFGSVTIQNLSSFGAHRAIEIEDTW GRVLVDGVSGDGATLVNFAGSVDLLDQRMDRRNAQNAGDSSNYAFGWGSPNSRAVEIAGALTTIGTVAADLTISDNIIPL AAPTSAQVPTGVKLRIGNQVVQSTRMHRVGAVQLSVTPLSAPILTGATVIADRRSKVGRLELATRSSFHALDVNNSDVAD LDMTRMAYAGRNAVRLRGDSVVTVNGGRLPIMGRAGGDMRTFRAEGTSRVNLNGVYIPDNPAITTHVALIGGASSLSVRD CIVENPATIVAYGSRGQVSWAGNRKPDGSRAVWGGYEATWTPSLLIGGVDAGITYGTRQGSFVVQEDGMVTVRFDFTLTS KGTETGILTLGGIPFDCNTPNAFPIFMHFATLTDGTPLISTNGSVWTLSRQTTTGVASLTETQIGDTTRFRGSLTYRTTL >Mature_960_residues MQIIIWGADQQVTAVNVPLINLPIPNLSEMAALQQQVAEDAQAAADSAATVAGMQDDIDLAVEVSGEADAKATAAQLPPF VPFATRADIALTNLGDVRRISVAGVGDYRQAVGPIAYTPAAISADGIMLVPDGPITPQHFGARADLEYELQQIRGSGGVL TDAYGLVRTGGTNDRAAIVAADFYAALMDQPLVFPPGRYFIDGTIRPTTRWLSEDDFGAVLWLNYNEDETGRSTSGLEFF KSGTGLGVIGNHGFRLIGQFSRTTPKEGGNGQLGTVWRINDYYMPHEQPVLVGMHIRAKVVRAALQRNESGTITQRSIPS IQGAVMAGVEHSYFEIGVWGRTNVASTAPLLVHWGCRYAPESLDDTLGPDKTLARIIETYHACWIKVTYITPLDNRDGHN FLQPFDLACTGPADVYGVDSIGLAGGATGVNFGGALGSISCGDICDAYAIPRHKAVLWKGINIYSPKASGVNSALGSEQL YIKGMGTAKYPGDVEPGTDLPIQRQLRAEINVYNPQCSYAEDAVPGDQRTAFIDTVFGSVTIQNLSSFGAHRAIEIEDTW GRVLVDGVSGDGATLVNFAGSVDLLDQRMDRRNAQNAGDSSNYAFGWGSPNSRAVEIAGALTTIGTVAADLTISDNIIPL AAPTSAQVPTGVKLRIGNQVVQSTRMHRVGAVQLSVTPLSAPILTGATVIADRRSKVGRLELATRSSFHALDVNNSDVAD LDMTRMAYAGRNAVRLRGDSVVTVNGGRLPIMGRAGGDMRTFRAEGTSRVNLNGVYIPDNPAITTHVALIGGASSLSVRD CIVENPATIVAYGSRGQVSWAGNRKPDGSRAVWGGYEATWTPSLLIGGVDAGITYGTRQGSFVVQEDGMVTVRFDFTLTS KGTETGILTLGGIPFDCNTPNAFPIFMHFATLTDGTPLISTNGSVWTLSRQTTTGVASLTETQIGDTTRFRGSLTYRTTL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 101973; Mature: 101973
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIIIWGADQQVTAVNVPLINLPIPNLSEMAALQQQVAEDAQAAADSAATVAGMQDDIDL CEEEEECCCCEEEEEECEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEE AVEVSGEADAKATAAQLPPFVPFATRADIALTNLGDVRRISVAGVGDYRQAVGPIAYTPA EEEECCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCCHHHHHCCCCEECCC AISADGIMLVPDGPITPQHFGARADLEYELQQIRGSGGVLTDAYGLVRTGGTNDRAAIVA EECCCCEEEECCCCCCHHHCCCCCCHHHHHHHHCCCCCEEEECCEEEEECCCCCCEEEEE ADFYAALMDQPLVFPPGRYFIDGTIRPTTRWLSEDDFGAVLWLNYNEDETGRSTSGLEFF HHHHHHHHCCCEECCCCCEEEECEECCHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHH KSGTGLGVIGNHGFRLIGQFSRTTPKEGGNGQLGTVWRINDYYMPHEQPVLVGMHIRAKV HCCCCEEEECCCCEEEEEEHHCCCCCCCCCCCEEEEEEEECEECCCCCCEEEEEHHHHHH VRAALQRNESGTITQRSIPSIQGAVMAGVEHSYFEIGVWGRTNVASTAPLLVHWGCRYAP HHHHHHCCCCCCEEECCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCEEEECCCCCCC ESLDDTLGPDKTLARIIETYHACWIKVTYITPLDNRDGHNFLQPFDLACTGPADVYGVDS CHHHHCCCCHHHHHHHHHHHCEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCEEECCC IGLAGGATGVNFGGALGSISCGDICDAYAIPRHKAVLWKGINIYSPKASGVNSALGSEQL CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCEEECCCCCCCHHHCCCCEE YIKGMGTAKYPGDVEPGTDLPIQRQLRAEINVYNPQCSYAEDAVPGDQRTAFIDTVFGSV EEEECCCCCCCCCCCCCCCCCHHHEEEEEEEEECCCCCCCCCCCCCCCCEEEEEHHHCCE TIQNLSSFGAHRAIEIEDTWGRVLVDGVSGDGATLVNFAGSVDLLDQRMDRRNAQNAGDS EEEHHHHCCCCEEEEEECCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCC SNYAFGWGSPNSRAVEIAGALTTIGTVAADLTISDNIIPLAAPTSAQVPTGVKLRIGNQV CCEEEECCCCCCCEEEEEHHHHHHHHEEEEEEECCCEEEEECCCCCCCCCCEEEEECHHH VQSTRMHRVGAVQLSVTPLSAPILTGATVIADRRSKVGRLELATRSSFHALDVNNSDVAD HHHHHHHEEEEEEEEEECCCCCHHCCEEEEECCCCCCCEEEEEECCCEEEEECCCCCCCC LDMTRMAYAGRNAVRLRGDSVVTVNGGRLPIMGRAGGDMRTFRAEGTSRVNLNGVYIPDN CHHHHHHHCCCCEEEEECCEEEEECCCEEEEEECCCCCCEEEECCCCCEEEEEEEEECCC PAITTHVALIGGASSLSVRDCIVENPATIVAYGSRGQVSWAGNRKPDGSRAVWGGYEATW CCEEEEEEEEECCCCCEEHHHEECCCCEEEEECCCCEEEECCCCCCCCCEEEECCCCCCC TPSLLIGGVDAGITYGTRQGSFVVQEDGMVTVRFDFTLTSKGTETGILTLGGIPFDCNTP CCEEEEECCCCCEEECCCCCCEEEECCCEEEEEEEEEEECCCCCCEEEEECCEECCCCCC NAFPIFMHFATLTDGTPLISTNGSVWTLSRQTTTGVASLTETQIGDTTRFRGSLTYRTTL CCCEEEEEEEECCCCCEEEECCCCEEEEECCCCCCHHEHHHCCCCCCEEEEEEEEEEEEC >Mature Secondary Structure MQIIIWGADQQVTAVNVPLINLPIPNLSEMAALQQQVAEDAQAAADSAATVAGMQDDIDL CEEEEECCCCEEEEEECEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEE AVEVSGEADAKATAAQLPPFVPFATRADIALTNLGDVRRISVAGVGDYRQAVGPIAYTPA EEEECCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCCHHHHHCCCCEECCC AISADGIMLVPDGPITPQHFGARADLEYELQQIRGSGGVLTDAYGLVRTGGTNDRAAIVA EECCCCEEEECCCCCCHHHCCCCCCHHHHHHHHCCCCCEEEECCEEEEECCCCCCEEEEE ADFYAALMDQPLVFPPGRYFIDGTIRPTTRWLSEDDFGAVLWLNYNEDETGRSTSGLEFF HHHHHHHHCCCEECCCCCEEEECEECCHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHH KSGTGLGVIGNHGFRLIGQFSRTTPKEGGNGQLGTVWRINDYYMPHEQPVLVGMHIRAKV HCCCCEEEECCCCEEEEEEHHCCCCCCCCCCCEEEEEEEECEECCCCCCEEEEEHHHHHH VRAALQRNESGTITQRSIPSIQGAVMAGVEHSYFEIGVWGRTNVASTAPLLVHWGCRYAP HHHHHHCCCCCCEEECCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCEEEECCCCCCC ESLDDTLGPDKTLARIIETYHACWIKVTYITPLDNRDGHNFLQPFDLACTGPADVYGVDS CHHHHCCCCHHHHHHHHHHHCEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCEEECCC IGLAGGATGVNFGGALGSISCGDICDAYAIPRHKAVLWKGINIYSPKASGVNSALGSEQL CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCEEECCCCCCCHHHCCCCEE YIKGMGTAKYPGDVEPGTDLPIQRQLRAEINVYNPQCSYAEDAVPGDQRTAFIDTVFGSV EEEECCCCCCCCCCCCCCCCCHHHEEEEEEEEECCCCCCCCCCCCCCCCEEEEEHHHCCE TIQNLSSFGAHRAIEIEDTWGRVLVDGVSGDGATLVNFAGSVDLLDQRMDRRNAQNAGDS EEEHHHHCCCCEEEEEECCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCC SNYAFGWGSPNSRAVEIAGALTTIGTVAADLTISDNIIPLAAPTSAQVPTGVKLRIGNQV CCEEEECCCCCCCEEEEEHHHHHHHHEEEEEEECCCEEEEECCCCCCCCCCEEEEECHHH VQSTRMHRVGAVQLSVTPLSAPILTGATVIADRRSKVGRLELATRSSFHALDVNNSDVAD HHHHHHHEEEEEEEEEECCCCCHHCCEEEEECCCCCCCEEEEEECCCEEEEECCCCCCCC LDMTRMAYAGRNAVRLRGDSVVTVNGGRLPIMGRAGGDMRTFRAEGTSRVNLNGVYIPDN CHHHHHHHCCCCEEEEECCEEEEECCCEEEEEECCCCCCEEEECCCCCEEEEEEEEECCC PAITTHVALIGGASSLSVRDCIVENPATIVAYGSRGQVSWAGNRKPDGSRAVWGGYEATW CCEEEEEEEEECCCCCEEHHHEECCCCEEEEECCCCEEEECCCCCCCCCEEEECCCCCCC TPSLLIGGVDAGITYGTRQGSFVVQEDGMVTVRFDFTLTSKGTETGILTLGGIPFDCNTP CCEEEEECCCCCEEECCCCCCEEEECCCEEEEEEEEEEECCCCCCEEEEECCEECCCCCC NAFPIFMHFATLTDGTPLISTNGSVWTLSRQTTTGVASLTETQIGDTTRFRGSLTYRTTL CCCEEEEEEEECCCCCEEEECCCCEEEEECCCCCCHHEHHHCCCCCCEEEEEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA