Definition Paracoccus denitrificans PD1222 chromosome 2, complete sequence.
Accession NC_008687
Length 1,730,097

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The map label for this gene is 119386312

Identifier: 119386312

GI number: 119386312

Start: 754198

End: 757080

Strand: Direct

Name: 119386312

Synonym: Pden_3604

Alternate gene names: NA

Gene position: 754198-757080 (Clockwise)

Preceding gene: 119386311

Following gene: 119386313

Centisome position: 43.59

GC content: 65.24

Gene sequence:

>2883_bases
ATGCAGATCATAATCTGGGGTGCCGACCAGCAGGTCACCGCCGTTAATGTGCCGCTGATCAACCTGCCTATCCCGAATCT
GTCGGAGATGGCCGCATTGCAACAGCAGGTTGCGGAGGACGCGCAGGCCGCTGCGGATTCTGCCGCGACCGTGGCGGGCA
TGCAGGACGATATTGACCTCGCTGTCGAGGTTTCAGGCGAGGCCGACGCCAAAGCCACCGCCGCGCAACTGCCGCCGTTC
GTGCCCTTCGCGACCCGCGCCGACATTGCGCTGACGAACCTTGGCGACGTGCGCCGCATCAGTGTTGCCGGCGTCGGCGA
TTACCGTCAGGCAGTCGGCCCCATCGCCTACACCCCGGCTGCCATCTCGGCCGATGGGATCATGCTGGTCCCGGATGGGC
CGATCACTCCGCAGCATTTCGGGGCGCGGGCGGATCTGGAATACGAGTTGCAGCAGATCCGGGGTTCGGGCGGGGTCCTG
ACCGACGCTTATGGGCTGGTTCGCACGGGCGGGACCAATGACCGGGCTGCCATCGTCGCCGCCGATTTCTACGCTGCCCT
GATGGATCAGCCGCTGGTGTTCCCGCCCGGCCGCTATTTCATCGACGGCACCATCCGGCCGACCACGCGCTGGCTATCCG
AAGATGATTTTGGCGCGGTCCTCTGGCTCAACTACAACGAGGACGAGACGGGCCGGTCCACCTCGGGGCTTGAGTTCTTC
AAGAGCGGCACCGGGCTGGGCGTGATCGGAAACCACGGGTTCCGCCTGATCGGGCAGTTCTCGCGCACGACGCCGAAAGA
GGGCGGCAACGGCCAGCTTGGCACGGTCTGGCGCATCAACGACTACTACATGCCGCATGAACAGCCGGTGCTGGTCGGCA
TGCATATCCGGGCGAAGGTGGTGCGCGCCGCACTGCAACGCAACGAGAGCGGCACCATCACCCAGCGGTCCATCCCCTCG
ATCCAAGGGGCCGTTATGGCCGGGGTCGAGCATTCCTATTTCGAAATCGGAGTGTGGGGCCGGACCAACGTCGCCAGCAC
GGCGCCGCTGCTGGTCCATTGGGGCTGCCGCTACGCCCCCGAGAGCCTGGACGACACGCTCGGGCCTGACAAGACGCTGG
CACGGATCATCGAAACCTACCACGCCTGCTGGATCAAGGTCACTTACATCACGCCGCTGGATAATCGGGACGGGCACAAT
TTCTTGCAGCCGTTCGATCTGGCCTGCACCGGCCCGGCCGATGTTTACGGCGTGGATAGCATCGGCTTGGCCGGCGGCGC
GACCGGGGTCAACTTCGGCGGGGCGCTTGGGTCCATCTCCTGCGGCGATATCTGCGACGCCTATGCCATCCCGCGCCACA
AGGCGGTGCTGTGGAAGGGCATCAACATCTACAGCCCGAAAGCTTCCGGCGTGAACTCGGCCCTCGGGTCAGAACAGCTT
TACATCAAGGGCATGGGCACGGCGAAATATCCGGGCGACGTTGAGCCGGGCACAGATCTGCCGATCCAGCGCCAGTTGCG
CGCGGAAATCAACGTCTACAATCCGCAGTGCAGCTATGCCGAGGACGCCGTTCCCGGCGATCAGCGCACCGCCTTCATCG
ACACGGTGTTCGGCAGCGTCACCATCCAGAACCTCAGTTCGTTCGGTGCACATCGCGCCATCGAAATCGAGGATACCTGG
GGCCGGGTGCTGGTGGACGGCGTGTCAGGCGACGGCGCCACGCTGGTCAACTTCGCCGGGTCGGTCGATCTGCTGGATCA
GCGTATGGACCGCCGCAACGCCCAGAACGCCGGGGACAGCAGCAACTATGCGTTCGGCTGGGGCAGCCCGAACAGCCGGG
CGGTGGAGATTGCCGGCGCTCTGACCACCATCGGCACGGTGGCGGCGGACCTGACCATCTCGGACAACATCATCCCGCTT
GCCGCGCCCACCTCTGCGCAGGTGCCCACGGGCGTCAAACTGCGCATCGGCAATCAGGTGGTGCAGTCCACGCGCATGCA
TCGCGTCGGGGCCGTGCAGCTATCCGTCACGCCGCTGTCGGCCCCCATCCTGACCGGCGCCACCGTCATCGCGGATCGCC
GCTCCAAGGTCGGCAGGTTGGAACTGGCAACGCGGTCCAGCTTCCATGCGCTGGACGTCAACAACAGCGACGTGGCCGAC
CTGGACATGACCCGCATGGCCTATGCCGGCCGCAATGCCGTTCGGCTGCGCGGTGACAGCGTGGTCACGGTCAACGGCGG
GCGCTTGCCGATCATGGGCCGGGCAGGGGGTGATATGCGCACCTTCCGCGCCGAGGGCACGTCCCGCGTCAACCTGAACG
GCGTCTACATTCCTGATAACCCGGCCATCACGACGCATGTCGCCCTGATCGGCGGCGCGTCCAGTTTGTCGGTGCGGGAT
TGCATCGTAGAGAACCCCGCCACCATCGTCGCCTATGGCTCGCGCGGGCAGGTGTCGTGGGCCGGCAACCGCAAGCCGGA
CGGTAGCAGGGCTGTCTGGGGCGGCTACGAGGCCACCTGGACCCCGTCTCTGCTGATCGGCGGTGTTGATGCCGGGATCA
CCTACGGAACGCGGCAAGGCAGCTTTGTCGTGCAGGAAGATGGAATGGTGACGGTGCGGTTCGACTTCACCTTGACCAGC
AAGGGCACGGAGACGGGCATCCTGACGTTGGGCGGCATACCGTTCGACTGCAACACACCCAACGCGTTCCCGATCTTCAT
GCACTTCGCGACCCTGACGGATGGCACCCCGCTGATTTCCACCAACGGCAGCGTGTGGACCCTTAGCCGCCAGACCACCA
CGGGCGTTGCGTCCCTGACGGAAACCCAGATCGGGGACACGACGCGCTTCCGTGGCTCGCTCACCTATCGGACGACGCTT
TGA

Upstream 100 bases:

>100_bases
CTTACAAATTTGACGTGTGGGTAATCAAAGGCGGTGAAAAGCTGCCCATTCCCGCTTCGGTCAATATCCCGCTGCATACT
ATCGAGGGGGTCACGCACTA

Downstream 100 bases:

>100_bases
CCCCCACGACAATACGGAGACGGCATGGAGCCTGATTACCGGCGCGATCTGGCGCGCATCGAATCCAAGCTGGACCGCGT
GGAGACGGCCATCATCAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 960; Mature: 960

Protein sequence:

>960_residues
MQIIIWGADQQVTAVNVPLINLPIPNLSEMAALQQQVAEDAQAAADSAATVAGMQDDIDLAVEVSGEADAKATAAQLPPF
VPFATRADIALTNLGDVRRISVAGVGDYRQAVGPIAYTPAAISADGIMLVPDGPITPQHFGARADLEYELQQIRGSGGVL
TDAYGLVRTGGTNDRAAIVAADFYAALMDQPLVFPPGRYFIDGTIRPTTRWLSEDDFGAVLWLNYNEDETGRSTSGLEFF
KSGTGLGVIGNHGFRLIGQFSRTTPKEGGNGQLGTVWRINDYYMPHEQPVLVGMHIRAKVVRAALQRNESGTITQRSIPS
IQGAVMAGVEHSYFEIGVWGRTNVASTAPLLVHWGCRYAPESLDDTLGPDKTLARIIETYHACWIKVTYITPLDNRDGHN
FLQPFDLACTGPADVYGVDSIGLAGGATGVNFGGALGSISCGDICDAYAIPRHKAVLWKGINIYSPKASGVNSALGSEQL
YIKGMGTAKYPGDVEPGTDLPIQRQLRAEINVYNPQCSYAEDAVPGDQRTAFIDTVFGSVTIQNLSSFGAHRAIEIEDTW
GRVLVDGVSGDGATLVNFAGSVDLLDQRMDRRNAQNAGDSSNYAFGWGSPNSRAVEIAGALTTIGTVAADLTISDNIIPL
AAPTSAQVPTGVKLRIGNQVVQSTRMHRVGAVQLSVTPLSAPILTGATVIADRRSKVGRLELATRSSFHALDVNNSDVAD
LDMTRMAYAGRNAVRLRGDSVVTVNGGRLPIMGRAGGDMRTFRAEGTSRVNLNGVYIPDNPAITTHVALIGGASSLSVRD
CIVENPATIVAYGSRGQVSWAGNRKPDGSRAVWGGYEATWTPSLLIGGVDAGITYGTRQGSFVVQEDGMVTVRFDFTLTS
KGTETGILTLGGIPFDCNTPNAFPIFMHFATLTDGTPLISTNGSVWTLSRQTTTGVASLTETQIGDTTRFRGSLTYRTTL

Sequences:

>Translated_960_residues
MQIIIWGADQQVTAVNVPLINLPIPNLSEMAALQQQVAEDAQAAADSAATVAGMQDDIDLAVEVSGEADAKATAAQLPPF
VPFATRADIALTNLGDVRRISVAGVGDYRQAVGPIAYTPAAISADGIMLVPDGPITPQHFGARADLEYELQQIRGSGGVL
TDAYGLVRTGGTNDRAAIVAADFYAALMDQPLVFPPGRYFIDGTIRPTTRWLSEDDFGAVLWLNYNEDETGRSTSGLEFF
KSGTGLGVIGNHGFRLIGQFSRTTPKEGGNGQLGTVWRINDYYMPHEQPVLVGMHIRAKVVRAALQRNESGTITQRSIPS
IQGAVMAGVEHSYFEIGVWGRTNVASTAPLLVHWGCRYAPESLDDTLGPDKTLARIIETYHACWIKVTYITPLDNRDGHN
FLQPFDLACTGPADVYGVDSIGLAGGATGVNFGGALGSISCGDICDAYAIPRHKAVLWKGINIYSPKASGVNSALGSEQL
YIKGMGTAKYPGDVEPGTDLPIQRQLRAEINVYNPQCSYAEDAVPGDQRTAFIDTVFGSVTIQNLSSFGAHRAIEIEDTW
GRVLVDGVSGDGATLVNFAGSVDLLDQRMDRRNAQNAGDSSNYAFGWGSPNSRAVEIAGALTTIGTVAADLTISDNIIPL
AAPTSAQVPTGVKLRIGNQVVQSTRMHRVGAVQLSVTPLSAPILTGATVIADRRSKVGRLELATRSSFHALDVNNSDVAD
LDMTRMAYAGRNAVRLRGDSVVTVNGGRLPIMGRAGGDMRTFRAEGTSRVNLNGVYIPDNPAITTHVALIGGASSLSVRD
CIVENPATIVAYGSRGQVSWAGNRKPDGSRAVWGGYEATWTPSLLIGGVDAGITYGTRQGSFVVQEDGMVTVRFDFTLTS
KGTETGILTLGGIPFDCNTPNAFPIFMHFATLTDGTPLISTNGSVWTLSRQTTTGVASLTETQIGDTTRFRGSLTYRTTL
>Mature_960_residues
MQIIIWGADQQVTAVNVPLINLPIPNLSEMAALQQQVAEDAQAAADSAATVAGMQDDIDLAVEVSGEADAKATAAQLPPF
VPFATRADIALTNLGDVRRISVAGVGDYRQAVGPIAYTPAAISADGIMLVPDGPITPQHFGARADLEYELQQIRGSGGVL
TDAYGLVRTGGTNDRAAIVAADFYAALMDQPLVFPPGRYFIDGTIRPTTRWLSEDDFGAVLWLNYNEDETGRSTSGLEFF
KSGTGLGVIGNHGFRLIGQFSRTTPKEGGNGQLGTVWRINDYYMPHEQPVLVGMHIRAKVVRAALQRNESGTITQRSIPS
IQGAVMAGVEHSYFEIGVWGRTNVASTAPLLVHWGCRYAPESLDDTLGPDKTLARIIETYHACWIKVTYITPLDNRDGHN
FLQPFDLACTGPADVYGVDSIGLAGGATGVNFGGALGSISCGDICDAYAIPRHKAVLWKGINIYSPKASGVNSALGSEQL
YIKGMGTAKYPGDVEPGTDLPIQRQLRAEINVYNPQCSYAEDAVPGDQRTAFIDTVFGSVTIQNLSSFGAHRAIEIEDTW
GRVLVDGVSGDGATLVNFAGSVDLLDQRMDRRNAQNAGDSSNYAFGWGSPNSRAVEIAGALTTIGTVAADLTISDNIIPL
AAPTSAQVPTGVKLRIGNQVVQSTRMHRVGAVQLSVTPLSAPILTGATVIADRRSKVGRLELATRSSFHALDVNNSDVAD
LDMTRMAYAGRNAVRLRGDSVVTVNGGRLPIMGRAGGDMRTFRAEGTSRVNLNGVYIPDNPAITTHVALIGGASSLSVRD
CIVENPATIVAYGSRGQVSWAGNRKPDGSRAVWGGYEATWTPSLLIGGVDAGITYGTRQGSFVVQEDGMVTVRFDFTLTS
KGTETGILTLGGIPFDCNTPNAFPIFMHFATLTDGTPLISTNGSVWTLSRQTTTGVASLTETQIGDTTRFRGSLTYRTTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 101973; Mature: 101973

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIIIWGADQQVTAVNVPLINLPIPNLSEMAALQQQVAEDAQAAADSAATVAGMQDDIDL
CEEEEECCCCEEEEEECEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEE
AVEVSGEADAKATAAQLPPFVPFATRADIALTNLGDVRRISVAGVGDYRQAVGPIAYTPA
EEEECCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCCHHHHHCCCCEECCC
AISADGIMLVPDGPITPQHFGARADLEYELQQIRGSGGVLTDAYGLVRTGGTNDRAAIVA
EECCCCEEEECCCCCCHHHCCCCCCHHHHHHHHCCCCCEEEECCEEEEECCCCCCEEEEE
ADFYAALMDQPLVFPPGRYFIDGTIRPTTRWLSEDDFGAVLWLNYNEDETGRSTSGLEFF
HHHHHHHHCCCEECCCCCEEEECEECCHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHH
KSGTGLGVIGNHGFRLIGQFSRTTPKEGGNGQLGTVWRINDYYMPHEQPVLVGMHIRAKV
HCCCCEEEECCCCEEEEEEHHCCCCCCCCCCCEEEEEEEECEECCCCCCEEEEEHHHHHH
VRAALQRNESGTITQRSIPSIQGAVMAGVEHSYFEIGVWGRTNVASTAPLLVHWGCRYAP
HHHHHHCCCCCCEEECCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCEEEECCCCCCC
ESLDDTLGPDKTLARIIETYHACWIKVTYITPLDNRDGHNFLQPFDLACTGPADVYGVDS
CHHHHCCCCHHHHHHHHHHHCEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCEEECCC
IGLAGGATGVNFGGALGSISCGDICDAYAIPRHKAVLWKGINIYSPKASGVNSALGSEQL
CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCEEECCCCCCCHHHCCCCEE
YIKGMGTAKYPGDVEPGTDLPIQRQLRAEINVYNPQCSYAEDAVPGDQRTAFIDTVFGSV
EEEECCCCCCCCCCCCCCCCCHHHEEEEEEEEECCCCCCCCCCCCCCCCEEEEEHHHCCE
TIQNLSSFGAHRAIEIEDTWGRVLVDGVSGDGATLVNFAGSVDLLDQRMDRRNAQNAGDS
EEEHHHHCCCCEEEEEECCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCC
SNYAFGWGSPNSRAVEIAGALTTIGTVAADLTISDNIIPLAAPTSAQVPTGVKLRIGNQV
CCEEEECCCCCCCEEEEEHHHHHHHHEEEEEEECCCEEEEECCCCCCCCCCEEEEECHHH
VQSTRMHRVGAVQLSVTPLSAPILTGATVIADRRSKVGRLELATRSSFHALDVNNSDVAD
HHHHHHHEEEEEEEEEECCCCCHHCCEEEEECCCCCCCEEEEEECCCEEEEECCCCCCCC
LDMTRMAYAGRNAVRLRGDSVVTVNGGRLPIMGRAGGDMRTFRAEGTSRVNLNGVYIPDN
CHHHHHHHCCCCEEEEECCEEEEECCCEEEEEECCCCCCEEEECCCCCEEEEEEEEECCC
PAITTHVALIGGASSLSVRDCIVENPATIVAYGSRGQVSWAGNRKPDGSRAVWGGYEATW
CCEEEEEEEEECCCCCEEHHHEECCCCEEEEECCCCEEEECCCCCCCCCEEEECCCCCCC
TPSLLIGGVDAGITYGTRQGSFVVQEDGMVTVRFDFTLTSKGTETGILTLGGIPFDCNTP
CCEEEEECCCCCEEECCCCCCEEEECCCEEEEEEEEEEECCCCCCEEEEECCEECCCCCC
NAFPIFMHFATLTDGTPLISTNGSVWTLSRQTTTGVASLTETQIGDTTRFRGSLTYRTTL
CCCEEEEEEEECCCCCEEEECCCCEEEEECCCCCCHHEHHHCCCCCCEEEEEEEEEEEEC
>Mature Secondary Structure
MQIIIWGADQQVTAVNVPLINLPIPNLSEMAALQQQVAEDAQAAADSAATVAGMQDDIDL
CEEEEECCCCEEEEEECEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCEE
AVEVSGEADAKATAAQLPPFVPFATRADIALTNLGDVRRISVAGVGDYRQAVGPIAYTPA
EEEECCCCCCCHHHHCCCCCCCCCCCCCEEEECCCCEEEEEEECCCHHHHHCCCCEECCC
AISADGIMLVPDGPITPQHFGARADLEYELQQIRGSGGVLTDAYGLVRTGGTNDRAAIVA
EECCCCEEEECCCCCCHHHCCCCCCHHHHHHHHCCCCCEEEECCEEEEECCCCCCEEEEE
ADFYAALMDQPLVFPPGRYFIDGTIRPTTRWLSEDDFGAVLWLNYNEDETGRSTSGLEFF
HHHHHHHHCCCEECCCCCEEEECEECCHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHH
KSGTGLGVIGNHGFRLIGQFSRTTPKEGGNGQLGTVWRINDYYMPHEQPVLVGMHIRAKV
HCCCCEEEECCCCEEEEEEHHCCCCCCCCCCCEEEEEEEECEECCCCCCEEEEEHHHHHH
VRAALQRNESGTITQRSIPSIQGAVMAGVEHSYFEIGVWGRTNVASTAPLLVHWGCRYAP
HHHHHHCCCCCCEEECCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCEEEECCCCCCC
ESLDDTLGPDKTLARIIETYHACWIKVTYITPLDNRDGHNFLQPFDLACTGPADVYGVDS
CHHHHCCCCHHHHHHHHHHHCEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCEEECCC
IGLAGGATGVNFGGALGSISCGDICDAYAIPRHKAVLWKGINIYSPKASGVNSALGSEQL
CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECCEEECCCCCCCHHHCCCCEE
YIKGMGTAKYPGDVEPGTDLPIQRQLRAEINVYNPQCSYAEDAVPGDQRTAFIDTVFGSV
EEEECCCCCCCCCCCCCCCCCHHHEEEEEEEEECCCCCCCCCCCCCCCCEEEEEHHHCCE
TIQNLSSFGAHRAIEIEDTWGRVLVDGVSGDGATLVNFAGSVDLLDQRMDRRNAQNAGDS
EEEHHHHCCCCEEEEEECCCCEEEEEECCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCC
SNYAFGWGSPNSRAVEIAGALTTIGTVAADLTISDNIIPLAAPTSAQVPTGVKLRIGNQV
CCEEEECCCCCCCEEEEEHHHHHHHHEEEEEEECCCEEEEECCCCCCCCCCEEEEECHHH
VQSTRMHRVGAVQLSVTPLSAPILTGATVIADRRSKVGRLELATRSSFHALDVNNSDVAD
HHHHHHHEEEEEEEEEECCCCCHHCCEEEEECCCCCCCEEEEEECCCEEEEECCCCCCCC
LDMTRMAYAGRNAVRLRGDSVVTVNGGRLPIMGRAGGDMRTFRAEGTSRVNLNGVYIPDN
CHHHHHHHCCCCEEEEECCEEEEECCCEEEEEECCCCCCEEEECCCCCEEEEEEEEECCC
PAITTHVALIGGASSLSVRDCIVENPATIVAYGSRGQVSWAGNRKPDGSRAVWGGYEATW
CCEEEEEEEEECCCCCEEHHHEECCCCEEEEECCCCEEEECCCCCCCCCEEEECCCCCCC
TPSLLIGGVDAGITYGTRQGSFVVQEDGMVTVRFDFTLTSKGTETGILTLGGIPFDCNTP
CCEEEEECCCCCEEECCCCCCEEEECCCEEEEEEEEEEECCCCCCEEEEECCEECCCCCC
NAFPIFMHFATLTDGTPLISTNGSVWTLSRQTTTGVASLTETQIGDTTRFRGSLTYRTTL
CCCEEEEEEEECCCCCEEEECCCCEEEEECCCCCCHHEHHHCCCCCCEEEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA