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The map label for this gene is ybdA [C]

Identifier: 119386219

GI number: 119386219

Start: 652649

End: 654229

Strand: Direct

Name: ybdA [C]

Synonym: Pden_3508

Alternate gene names: 119386219

Gene position: 652649-654229 (Clockwise)

Preceding gene: 119386218

Following gene: 119386220

Centisome position: 37.72

GC content: 70.59

Gene sequence:

>1581_bases
ATGGCCGAACCGAACCCCGGGACATCCGGTCCCCTGACTTTCCCGGTCTTTCGCGCGCTGTGGATCGCGACGATCATATC
CAACATCGGCACCTGGATGCACGATGTCGGCGCCGCCTGGCTGATGACCTCGCTGTCGCCCAGCCCGCTTCTGGTCGCCC
TGGTGCAGGCGGCGACGACCCTGCCGATGTTCCTGCTGGCGCTGCCCGCCGGGGCGATGGCGGATATCGTCGACCGGCGA
AAGCTGCTGCTGGCGGCGCAGGTGCTTGGCCTTTCCGCGGCGGCGACGCTTTCGGTCCTGACCCTGCTGGGCCTGACCGG
CCCCTGGGTCCTGCTGGCCGCGACCTTCGTGCTGGGCGTCTCGGCCGCGATCAGCGCGCCGGTGTTCCAGGCCATCGTCC
CCGAACTGGTGGACAAGCAGGCGCTGCCCGATGCCGTGGCGCTGAACAGCTTGGGCGTGAACATCTCGCGCGCCATCGGC
CCGGCGCTGGGCGGCGTGATCGTCGCGCTGGCGGGCACCCCGGCGGTCTTTGCGCTGAATGCTGTTTCGGTGCTTGCCGT
CCTGGGCGTGCTGTTTCTCTGGAGGCGTGCCGAGACGGCGCACAGCCTGCCGCCCGAGCACTTCTTCGGCGCCCTGAAGG
CCGGATACCGCTATGCGCGGCATTCGCCTGCCATGCGGCTGGTGCTGATCCGGGCGGCGGGGTTCTTTCTGTTCGGCAGC
GCGCTCTGGGCCATGCTGCCGCTGGTCGGCCGCCGGATGCTGGGGCTGGACGCCGCAGGCTATGGCGCGCTTCTGGGCTG
CATGGGTGCGGGCGCGGTGCTTGGCGCGCTGCTGCTGAAGAGGCTGCGCAGGACGGTTCCCGCCAACCGCATCTCGGTCT
GGGCGACGCTGCTGTTTGCGCTGGCGACATTGACCCTGAGCCTTGTTCCCAATGCCTGGATCGCGGGCGCGGTCATGTTC
CTGGCGGGACTGGCCTGGATCGGGATGCTGACCTCGCTGAACGTGGCGGCGCAGACGGCCTCTCCGGGCTGGGTGAAGGC
GCGGGCGCTGGCCGTCTATCTGCTGGTCTTCCAGGGCGCGATGACGGGCGGCAGCGTGTTTTGGGGCACCGTCGCCTCGG
CGGCCGGCGTGCCGGCGGCGCTGGCGGCCGCGTCGGTGGGGCTGGTCGCCTCGGTGCTGCTGGCGCGGGTCTGGCGGCTG
CCGAAGGATGCGACGACCGACCTTGCCCCCTCGAACCATTGGGCGGAACCCGTCGTCGCCGTCCCGCCGGGGGATGATCG
CGGGCCGGTGCTGATCGAGATCGAGTATCGCGTCGATCCGGCCCGGACGGCCGAGTTCACGGCCGCGCTGCGCCGGTTCA
GTGCCACCCGCCAGCGCGACGGCGCGATCCGCTGGGATCTGTGGGAGGACGTCGCCGAGCCGGGGCGGCTGGTCGAGGCT
TTCGTGGTGGAAAGCTGGGTCGAGCACCAGCGCCAGCACGCCCGCGTCACCCATGCCGACCAACTGGACCAGCAGATGCT
CAACGCCTTCCATATCGGCGAAGCGCCGCCGCTGGTCAGGCACCTGCTGCGGCCGTCCTGA

Upstream 100 bases:

>100_bases
GCCGTCTGAGCCGGACAGGATCGTAGCGGCGGGATGCGCGCATCCCGCCGTCCACGGATACCGATGCCTGGTGTCCATTC
CCTTTTCGAGAGGTATCGAG

Downstream 100 bases:

>100_bases
CCCGGCCGGCGTTTGAAAATGACACCAACCAAGGACCGGCATGATGAAGCAAGCCCTGAAACCCTGTGAACCCGTTTTGC
TCAGCATCCTCAGGATCGTG

Product: protein of unknown function DUF894, DitE

Products: NA

Alternate protein names: Facilitator Superfamily Protein; Integral Membrane Efflux Protein; MFS Permease; MFS Family Transporter; Transmembrane Efflux Protein; Multidrug ABC Transporter; MFS Transporter; Facilitator Superfamily Permease; Permeases Of Facilitator Superfamily; Permease; Mfs Transporter; Facilitator Superfamily; Arabinose Efflux Permease Family Protein; Facilitator Superfamily Transporter; Transport Transmembrane Protein; Transporter Facilitator Family; Facilitator Superfamily Transmembrane Transporter; Permease Of Facilitator Superfamily Protein; Facilitator MFS1 Protein; ABC Transporter Permease Protein; Facilitator Transpoter; MFS Family Membrane Efflux Protein; Macrolide-Efflux Protein; Facilitator Superfamily Multidrug Efflux Transporter; Permease Of Facilitator Superfamily; Dioxygenase; MFS Family Diterpenoid Transporter; Drug Resistance Efflux Protein; MFS Superfamily Transporter

Number of amino acids: Translated: 526; Mature: 525

Protein sequence:

>526_residues
MAEPNPGTSGPLTFPVFRALWIATIISNIGTWMHDVGAAWLMTSLSPSPLLVALVQAATTLPMFLLALPAGAMADIVDRR
KLLLAAQVLGLSAAATLSVLTLLGLTGPWVLLAATFVLGVSAAISAPVFQAIVPELVDKQALPDAVALNSLGVNISRAIG
PALGGVIVALAGTPAVFALNAVSVLAVLGVLFLWRRAETAHSLPPEHFFGALKAGYRYARHSPAMRLVLIRAAGFFLFGS
ALWAMLPLVGRRMLGLDAAGYGALLGCMGAGAVLGALLLKRLRRTVPANRISVWATLLFALATLTLSLVPNAWIAGAVMF
LAGLAWIGMLTSLNVAAQTASPGWVKARALAVYLLVFQGAMTGGSVFWGTVASAAGVPAALAAASVGLVASVLLARVWRL
PKDATTDLAPSNHWAEPVVAVPPGDDRGPVLIEIEYRVDPARTAEFTAALRRFSATRQRDGAIRWDLWEDVAEPGRLVEA
FVVESWVEHQRQHARVTHADQLDQQMLNAFHIGEAPPLVRHLLRPS

Sequences:

>Translated_526_residues
MAEPNPGTSGPLTFPVFRALWIATIISNIGTWMHDVGAAWLMTSLSPSPLLVALVQAATTLPMFLLALPAGAMADIVDRR
KLLLAAQVLGLSAAATLSVLTLLGLTGPWVLLAATFVLGVSAAISAPVFQAIVPELVDKQALPDAVALNSLGVNISRAIG
PALGGVIVALAGTPAVFALNAVSVLAVLGVLFLWRRAETAHSLPPEHFFGALKAGYRYARHSPAMRLVLIRAAGFFLFGS
ALWAMLPLVGRRMLGLDAAGYGALLGCMGAGAVLGALLLKRLRRTVPANRISVWATLLFALATLTLSLVPNAWIAGAVMF
LAGLAWIGMLTSLNVAAQTASPGWVKARALAVYLLVFQGAMTGGSVFWGTVASAAGVPAALAAASVGLVASVLLARVWRL
PKDATTDLAPSNHWAEPVVAVPPGDDRGPVLIEIEYRVDPARTAEFTAALRRFSATRQRDGAIRWDLWEDVAEPGRLVEA
FVVESWVEHQRQHARVTHADQLDQQMLNAFHIGEAPPLVRHLLRPS
>Mature_525_residues
AEPNPGTSGPLTFPVFRALWIATIISNIGTWMHDVGAAWLMTSLSPSPLLVALVQAATTLPMFLLALPAGAMADIVDRRK
LLLAAQVLGLSAAATLSVLTLLGLTGPWVLLAATFVLGVSAAISAPVFQAIVPELVDKQALPDAVALNSLGVNISRAIGP
ALGGVIVALAGTPAVFALNAVSVLAVLGVLFLWRRAETAHSLPPEHFFGALKAGYRYARHSPAMRLVLIRAAGFFLFGSA
LWAMLPLVGRRMLGLDAAGYGALLGCMGAGAVLGALLLKRLRRTVPANRISVWATLLFALATLTLSLVPNAWIAGAVMFL
AGLAWIGMLTSLNVAAQTASPGWVKARALAVYLLVFQGAMTGGSVFWGTVASAAGVPAALAAASVGLVASVLLARVWRLP
KDATTDLAPSNHWAEPVVAVPPGDDRGPVLIEIEYRVDPARTAEFTAALRRFSATRQRDGAIRWDLWEDVAEPGRLVEAF
VVESWVEHQRQHARVTHADQLDQQMLNAFHIGEAPPLVRHLLRPS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 55498; Mature: 55367

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC
>Mature Secondary Structure 
AEPNPGTSGPLTFPVFRALWIATIISNIGTWMHDVGAAWLMTSLSPSPLLVALVQAATT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LPMFLLALPAGAMADIVDRRKLLLAAQVLGLSAAATLSVLTLLGLTGPWVLLAATFVLGV
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
SAAISAPVFQAIVPELVDKQALPDAVALNSLGVNISRAIGPALGGVIVALAGTPAVFALN
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHH
AVSVLAVLGVLFLWRRAETAHSLPPEHFFGALKAGYRYARHSPAMRLVLIRAAGFFLFGS
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
ALWAMLPLVGRRMLGLDAAGYGALLGCMGAGAVLGALLLKRLRRTVPANRISVWATLLFA
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LATLTLSLVPNAWIAGAVMFLAGLAWIGMLTSLNVAAQTASPGWVKARALAVYLLVFQGA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
MTGGSVFWGTVASAAGVPAALAAASVGLVASVLLARVWRLPKDATTDLAPSNHWAEPVVA
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEE
VPPGDDRGPVLIEIEYRVDPARTAEFTAALRRFSATRQRDGAIRWDLWEDVAEPGRLVEA
CCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCEECHHHHHHCCHHHHHHH
FVVESWVEHQRQHARVTHADQLDQQMLNAFHIGEAPPLVRHLLRPS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA