BacMap

Definition	Chlorobium phaeobacteroides DSM 266 chromosome, complete genome.
Accession	NC_008639
Length	3,133,902

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The map label for this gene is ydfG [C]

Identifier: 119357437

GI number: 119357437

Start: 1863449

End: 1864150

Strand: Direct

Name: ydfG [C]

Synonym: Cpha266_1636

Alternate gene names: 119357437

Gene position: 1863449-1864150 (Clockwise)

Preceding gene: 119357436

Following gene: 119357438

Centisome position: 59.46

GC content: 53.13

Gene sequence:

>702_bases
ATGCAAAACGAAAAAGTTTTTCTCATTACCGGCGCATCAACCGGAATCGGTGAAGCCACCGCAAAGCGTGCCATCGAAGC
AGGATACCGGGTTGTCGTTGCCGCCCGATCCACTGAAAAACTTGAGGCGATTGCAACCGAGTTTGGCAGAGAACGGGTTC
TGGCCGTTACCTGTGATGTTGCCGACTGGCAATCGCAGCAGCGGATGTTCCAGCAATCCCTCGAACGATTCGGACAGATC
GATGTTGTTTTTGCCAATGCCGGTTTATCAAAAGGCTCCTCCTTTTACGGCGGTACGGACAAACCGGATGAGTGGAAAGA
GATGGTGATGGTCAATGTATTCGGAGCTGCGGCTACAGCAAGACTGGCCCTGCCGGAACTCGCAAAAAGATGCGGCCACT
TTCTTTTGACTGGTTCGGTAGTCGGACACATTACCTCGATTCGAAACTTCTACTCGGCAACGAAGTGGGCGGTAACCGGA
ATGGCCCATGCCATCCGCAATGAAATGTCCGGAAGCGGCGTTCGTGTCACCCTTATTGAACCTGGCGTCGTTGATACTCC
GTTCTGGGATAACCTGCAGAAACCTGGAACCCCGGAACTGCAGCCGGATGATATTGCCCGAGCCGTCATCTACGCCGTCA
CCCAGCCACAGCATGTTGATATCAATGATCTGCTTATACGCCCGACTGGTCAGCCGCATTAA

Upstream 100 bases:

>100_bases
GGTGGAAAACCCGACAGACGTAATCATACAAAAACAGGCCTGCCTGGCGGATCGTTTTTTTCGATCATCGCTCAAAGACA
ACACGTAAATTTCAAGCATC

Downstream 100 bases:

>100_bases
AGAGCGACTCTCGCAGACGACAGGAAACTCTCTTTTTTTTACCGGGATAAAATTATTTTTATTTTTTTTCTGCAACTCTG
TTTCCCGGGCTATAACTCTT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 233

Protein sequence:

>233_residues
MQNEKVFLITGASTGIGEATAKRAIEAGYRVVVAARSTEKLEAIATEFGRERVLAVTCDVADWQSQQRMFQQSLERFGQI
DVVFANAGLSKGSSFYGGTDKPDEWKEMVMVNVFGAAATARLALPELAKRCGHFLLTGSVVGHITSIRNFYSATKWAVTG
MAHAIRNEMSGSGVRVTLIEPGVVDTPFWDNLQKPGTPELQPDDIARAVIYAVTQPQHVDINDLLIRPTGQPH

Sequences:

>Translated_233_residues
MQNEKVFLITGASTGIGEATAKRAIEAGYRVVVAARSTEKLEAIATEFGRERVLAVTCDVADWQSQQRMFQQSLERFGQI
DVVFANAGLSKGSSFYGGTDKPDEWKEMVMVNVFGAAATARLALPELAKRCGHFLLTGSVVGHITSIRNFYSATKWAVTG
MAHAIRNEMSGSGVRVTLIEPGVVDTPFWDNLQKPGTPELQPDDIARAVIYAVTQPQHVDINDLLIRPTGQPH
>Mature_233_residues
MQNEKVFLITGASTGIGEATAKRAIEAGYRVVVAARSTEKLEAIATEFGRERVLAVTCDVADWQSQQRMFQQSLERFGQI
DVVFANAGLSKGSSFYGGTDKPDEWKEMVMVNVFGAAATARLALPELAKRCGHFLLTGSVVGHITSIRNFYSATKWAVTG
MAHAIRNEMSGSGVRVTLIEPGVVDTPFWDNLQKPGTPELQPDDIARAVIYAVTQPQHVDINDLLIRPTGQPH

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=251, Percent_Identity=32.6693227091633, Blast_Score=130, Evalue=1e-30,
Organism=Homo sapiens, GI40254992, Length=222, Percent_Identity=27.027027027027, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI59889578, Length=185, Percent_Identity=30.2702702702703, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI31542939, Length=206, Percent_Identity=26.2135922330097, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI20149619, Length=196, Percent_Identity=30.1020408163265, Blast_Score=78, Evalue=7e-15,
Organism=Homo sapiens, GI32483357, Length=190, Percent_Identity=28.4210526315789, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI5031737, Length=190, Percent_Identity=25.2631578947368, Blast_Score=74, Evalue=9e-14,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=25.2631578947368, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI40548397, Length=200, Percent_Identity=28.5, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI214010158, Length=200, Percent_Identity=28.5, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI214010156, Length=200, Percent_Identity=28.5, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI22758144, Length=200, Percent_Identity=28.5, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7706318, Length=197, Percent_Identity=26.9035532994924, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI4503817, Length=223, Percent_Identity=24.2152466367713, Blast_Score=72, Evalue=3e-13,
Organism=Homo sapiens, GI4758504, Length=199, Percent_Identity=28.643216080402, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI19923817, Length=199, Percent_Identity=24.6231155778894, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI40807363, Length=208, Percent_Identity=27.8846153846154, Blast_Score=65, Evalue=4e-11,
Organism=Escherichia coli, GI1787820, Length=241, Percent_Identity=31.1203319502075, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI87082100, Length=200, Percent_Identity=32.5, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1786701, Length=199, Percent_Identity=30.6532663316583, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1787335, Length=186, Percent_Identity=26.3440860215054, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787905, Length=230, Percent_Identity=26.0869565217391, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786812, Length=244, Percent_Identity=26.6393442622951, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787526, Length=190, Percent_Identity=28.9473684210526, Blast_Score=60, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=206, Percent_Identity=30.5825242718447, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17559104, Length=201, Percent_Identity=28.3582089552239, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17560332, Length=196, Percent_Identity=29.5918367346939, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17562904, Length=202, Percent_Identity=27.2277227722772, Blast_Score=77, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17563726, Length=202, Percent_Identity=26.2376237623762, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=214, Percent_Identity=29.9065420560748, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17561402, Length=248, Percent_Identity=25, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=230, Percent_Identity=26.5217391304348, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=203, Percent_Identity=25.615763546798, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=200, Percent_Identity=27, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=235, Percent_Identity=25.1063829787234, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=200, Percent_Identity=26.5, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=233, Percent_Identity=24.8927038626609, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=209, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560150, Length=211, Percent_Identity=27.0142180094787, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17562906, Length=200, Percent_Identity=25, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=196, Percent_Identity=27.0408163265306, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=197, Percent_Identity=24.8730964467005, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=220, Percent_Identity=28.6363636363636, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=217, Percent_Identity=28.110599078341, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=195, Percent_Identity=27.1794871794872, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI17538486, Length=202, Percent_Identity=26.2376237623762, Blast_Score=65, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=252, Percent_Identity=32.9365079365079, Blast_Score=108, Evalue=6e-25,
Organism=Saccharomyces cerevisiae, GI6322227, Length=214, Percent_Identity=27.5700934579439, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6322067, Length=199, Percent_Identity=30.1507537688442, Blast_Score=69, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6322226, Length=197, Percent_Identity=27.4111675126904, Blast_Score=67, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=189, Percent_Identity=24.3386243386243, Blast_Score=62, Evalue=9e-11,
Organism=Drosophila melanogaster, GI116007236, Length=242, Percent_Identity=34.7107438016529, Blast_Score=134, Evalue=6e-32,
Organism=Drosophila melanogaster, GI24641232, Length=245, Percent_Identity=32.6530612244898, Blast_Score=119, Evalue=2e-27,
Organism=Drosophila melanogaster, GI116007234, Length=246, Percent_Identity=32.520325203252, Blast_Score=115, Evalue=2e-26,
Organism=Drosophila melanogaster, GI24648944, Length=235, Percent_Identity=33.6170212765957, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI281364494, Length=244, Percent_Identity=31.9672131147541, Blast_Score=109, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24663911, Length=247, Percent_Identity=29.5546558704453, Blast_Score=106, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24641388, Length=245, Percent_Identity=30.2040816326531, Blast_Score=100, Evalue=9e-22,
Organism=Drosophila melanogaster, GI28571387, Length=244, Percent_Identity=30.327868852459, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24648693, Length=244, Percent_Identity=30.7377049180328, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI21355889, Length=244, Percent_Identity=30.7377049180328, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI21358495, Length=190, Percent_Identity=33.1578947368421, Blast_Score=90, Evalue=1e-18,
Organism=Drosophila melanogaster, GI116007238, Length=201, Percent_Identity=31.3432835820896, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI21355319, Length=194, Percent_Identity=27.8350515463918, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24644339, Length=190, Percent_Identity=31.0526315789474, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24639444, Length=242, Percent_Identity=27.6859504132231, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17737361, Length=204, Percent_Identity=27.4509803921569, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI28571526, Length=191, Percent_Identity=30.3664921465969, Blast_Score=75, Evalue=4e-14,
Organism=Drosophila melanogaster, GI116007232, Length=192, Percent_Identity=30.2083333333333, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI23397609, Length=197, Percent_Identity=31.4720812182741, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=29.0155440414508, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI45553409, Length=210, Percent_Identity=25.2380952380952, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24647948, Length=210, Percent_Identity=25.2380952380952, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24647946, Length=210, Percent_Identity=25.2380952380952, Blast_Score=65, Evalue=5e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25390; Mature: 25390

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNEKVFLITGASTGIGEATAKRAIEAGYRVVVAARSTEKLEAIATEFGRERVLAVTCDV
CCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECC
ADWQSQQRMFQQSLERFGQIDVVFANAGLSKGSSFYGGTDKPDEWKEMVMVNVFGAAATA
HHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHEEHEEECCHHHHH
RLALPELAKRCGHFLLTGSVVGHITSIRNFYSATKWAVTGMAHAIRNEMSGSGVRVTLIE
HHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
PGVVDTPFWDNLQKPGTPELQPDDIARAVIYAVTQPQHVDINDLLIRPTGQPH
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCHHHEEECCCCCCC
>Mature Secondary Structure
MQNEKVFLITGASTGIGEATAKRAIEAGYRVVVAARSTEKLEAIATEFGRERVLAVTCDV
CCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECC
ADWQSQQRMFQQSLERFGQIDVVFANAGLSKGSSFYGGTDKPDEWKEMVMVNVFGAAATA
HHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHEEHEEECCHHHHH
RLALPELAKRCGHFLLTGSVVGHITSIRNFYSATKWAVTGMAHAIRNEMSGSGVRVTLIE
HHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
PGVVDTPFWDNLQKPGTPELQPDDIARAVIYAVTQPQHVDINDLLIRPTGQPH
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHEECCCCCCCHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]