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The map label for this gene is tnpA [H]

Identifier: 119356955

GI number: 119356955

Start: 1286645

End: 1288216

Strand: Direct

Name: tnpA [H]

Synonym: Cpha266_1136

Alternate gene names: 119356955

Gene position: 1286645-1288216 (Clockwise)

Preceding gene: 119356954

Following gene: 119356956

Centisome position: 41.06

GC content: 50.89

Gene sequence:

>1572_bases
ATGAGGACACAGTTAAAAAAGCTAACCATGTACAACAAAGTTAAGGAATTTGCCCGAGAAGGATTAAGCATCCGCCAAAT
CAGTCGAAAGACGGGCATGGACAGAGTGACGGTGCGCAAGTTCCTCCGCATGACCGATGAGGAATTCAGTGCGTTTCTTG
CTCTGCAGAAGCGGCGCCTCCGAAAATTGCAGCCTTATGAACAGTTCGTCAAGGATAGGGTTACCGACTATCCTGACTGC
AGTGCAACTCAAGTTGAAGACTGGCTGAAGGAGCATCACCCTGTTTTTCCGGAGGTAACGACTCGAACGATCTACTCTTT
TGTCCAGTGGATCCGAAAAGCCTATGATCTTCCAAAACCGAAAGGAACCCCTCGTGCCTATCATCCGGTCGAGCAACTTC
CTTACGGAGAGCAGGCGCAGGTTGATTTCGGTGAGTACTGGATGGCGAGTGCTGATGCCTGCAAAGTGAAGGTGCACTTC
ATGATCATGCTGCTCTCCCGAAGCCGCAGGAAGTTTGTCAGCTTCAGCCAGCAACCGATTACGACCCGTTTTGTGCTTGA
GGCTCATGAACAGGCATTTTCTTTTTTTGAGGGCATACCGCACACACTGGTCTATGATCAGGATTCCACCATTGTTACCG
ATGAGAACCGGGGTGCTATCCTCTATACTGAGGCATTCAGGAAATACCTGTTGCACCGCAGTCTGAAGATCCATCTCTGT
CGGAAAAGCGATCCGGAAAGCAAAGGAAAAATCGAGGCCGGCGTCAAATATGTGAAGTACAACTTCCTGCCGGGGCGACG
CTTCGTCAATCTTGAAGTCCTGAACCAGGAAGCGTTGCTCTGGCTTGAACGAACAGCCAATGCCAAGGAACATGCCACAA
CGCGGCTGATACCTGATGCTGAATGGCAGGTGGAGAAACAGCATCTTCGTCCTTTTGAACCCTTACCCTATCCGATTTCC
GGTACTGTCGGTAAAGAGTATCACGTTCGCAAAGACAACACGATCTCGTATCGAGGGAATTTCTATAGCCTGCCGGTCGG
CACCTATGCAGGGCCGGGGACACTGGTTGTGCTGGAAGTCAGGCAGAACACCCTTTGTCTCTATGCTCAAGAGGGCAGGT
TGCTGGCCAATCACCCGATTGAGAGCGGCAAAGGCACCGTGGTGATCAACAACAACCATCGCCGTGATACCTCCTCCAAA
CTGCGAGAGTTGCAGGATTCGCTCATGCTGCTTTTCACCAATCAGGAACACGCGGAACGGTTTCTTGAAAGCATCCACAA
CCGTTATCCCCGATACAGTCGAGACCAGTTCCTGCATGTACGCAATGCCATCAGCGGATGCCAGCAGAAGCTGATTGATG
ATGCCCTCGCACACTGTGTCGATCATCATCTCTTTTCGTCCGGTGAGTTCCATGATATCCTGCACCATTACCGGAAGCAG
GAGGAAAAACAGAGTCATCAGGCGGTGTTCAACACCTTCCGCCCGAAAACACTCCGAAGTGATATGGACAGGATGCTCTC
GTTCGTGCCGGACAGCAGTGGCATAACCACCTATGAAAACATTTTCAGTTAA

Upstream 100 bases:

>100_bases
GAATAAGCCAATTTCGGAAAATAAGAATCACCCAGGGTTAGCGTAAAAAACACCCATAGCTCGTAGTTTGAAGGTGCCAA
CCAAATCAAACCCCAGAGCT

Downstream 100 bases:

>100_bases
CGACCATGGAAAGAACCATTACCACCATACAGGAACACGCCCGAGAACTTAATCTCACCGGGCTGGCAGGAACCGTCGAT
CTCCTGCTCGAAGAAGCGCG

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MRTQLKKLTMYNKVKEFAREGLSIRQISRKTGMDRVTVRKFLRMTDEEFSAFLALQKRRLRKLQPYEQFVKDRVTDYPDC
SATQVEDWLKEHHPVFPEVTTRTIYSFVQWIRKAYDLPKPKGTPRAYHPVEQLPYGEQAQVDFGEYWMASADACKVKVHF
MIMLLSRSRRKFVSFSQQPITTRFVLEAHEQAFSFFEGIPHTLVYDQDSTIVTDENRGAILYTEAFRKYLLHRSLKIHLC
RKSDPESKGKIEAGVKYVKYNFLPGRRFVNLEVLNQEALLWLERTANAKEHATTRLIPDAEWQVEKQHLRPFEPLPYPIS
GTVGKEYHVRKDNTISYRGNFYSLPVGTYAGPGTLVVLEVRQNTLCLYAQEGRLLANHPIESGKGTVVINNNHRRDTSSK
LRELQDSLMLLFTNQEHAERFLESIHNRYPRYSRDQFLHVRNAISGCQQKLIDDALAHCVDHHLFSSGEFHDILHHYRKQ
EEKQSHQAVFNTFRPKTLRSDMDRMLSFVPDSSGITTYENIFS

Sequences:

>Translated_523_residues
MRTQLKKLTMYNKVKEFAREGLSIRQISRKTGMDRVTVRKFLRMTDEEFSAFLALQKRRLRKLQPYEQFVKDRVTDYPDC
SATQVEDWLKEHHPVFPEVTTRTIYSFVQWIRKAYDLPKPKGTPRAYHPVEQLPYGEQAQVDFGEYWMASADACKVKVHF
MIMLLSRSRRKFVSFSQQPITTRFVLEAHEQAFSFFEGIPHTLVYDQDSTIVTDENRGAILYTEAFRKYLLHRSLKIHLC
RKSDPESKGKIEAGVKYVKYNFLPGRRFVNLEVLNQEALLWLERTANAKEHATTRLIPDAEWQVEKQHLRPFEPLPYPIS
GTVGKEYHVRKDNTISYRGNFYSLPVGTYAGPGTLVVLEVRQNTLCLYAQEGRLLANHPIESGKGTVVINNNHRRDTSSK
LRELQDSLMLLFTNQEHAERFLESIHNRYPRYSRDQFLHVRNAISGCQQKLIDDALAHCVDHHLFSSGEFHDILHHYRKQ
EEKQSHQAVFNTFRPKTLRSDMDRMLSFVPDSSGITTYENIFS
>Mature_523_residues
MRTQLKKLTMYNKVKEFAREGLSIRQISRKTGMDRVTVRKFLRMTDEEFSAFLALQKRRLRKLQPYEQFVKDRVTDYPDC
SATQVEDWLKEHHPVFPEVTTRTIYSFVQWIRKAYDLPKPKGTPRAYHPVEQLPYGEQAQVDFGEYWMASADACKVKVHF
MIMLLSRSRRKFVSFSQQPITTRFVLEAHEQAFSFFEGIPHTLVYDQDSTIVTDENRGAILYTEAFRKYLLHRSLKIHLC
RKSDPESKGKIEAGVKYVKYNFLPGRRFVNLEVLNQEALLWLERTANAKEHATTRLIPDAEWQVEKQHLRPFEPLPYPIS
GTVGKEYHVRKDNTISYRGNFYSLPVGTYAGPGTLVVLEVRQNTLCLYAQEGRLLANHPIESGKGTVVINNNHRRDTSSK
LRELQDSLMLLFTNQEHAERFLESIHNRYPRYSRDQFLHVRNAISGCQQKLIDDALAHCVDHHLFSSGEFHDILHHYRKQ
EEKQSHQAVFNTFRPKTLRSDMDRMLSFVPDSSGITTYENIFS

Specific function: Involved in the transposition of the insertion sequence (Potential) [H]

COG id: COG4584

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR017894
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 61260; Mature: 61260

Theoretical pI: Translated: 9.60; Mature: 9.60

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTQLKKLTMYNKVKEFAREGLSIRQISRKTGMDRVTVRKFLRMTDEEFSAFLALQKRRL
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RKLQPYEQFVKDRVTDYPDCSATQVEDWLKEHHPVFPEVTTRTIYSFVQWIRKAYDLPKP
HHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
KGTPRAYHPVEQLPYGEQAQVDFGEYWMASADACKVKVHFMIMLLSRSRRKFVSFSQQPI
CCCCCCCCCHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
TTRFVLEAHEQAFSFFEGIPHTLVYDQDSTIVTDENRGAILYTEAFRKYLLHRSLKIHLC
HHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCEEEEHHHHHHHHHHCCCEEEEE
RKSDPESKGKIEAGVKYVKYNFLPGRRFVNLEVLNQEALLWLERTANAKEHATTRLIPDA
CCCCCCCCCCHHHCEEEEEEECCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHCCCCCC
EWQVEKQHLRPFEPLPYPISGTVGKEYHVRKDNTISYRGNFYSLPVGTYAGPGTLVVLEV
HHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCEEECCCCCCCCCCEEEEEEE
RQNTLCLYAQEGRLLANHPIESGKGTVVINNNHRRDTSSKLRELQDSLMLLFTNQEHAER
CCCEEEEEECCCEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHEEEEECHHHHHH
FLESIHNRYPRYSRDQFLHVRNAISGCQQKLIDDALAHCVDHHLFSSGEFHDILHHYRKQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
EEKQSHQAVFNTFRPKTLRSDMDRMLSFVPDSSGITTYENIFS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCC
>Mature Secondary Structure
MRTQLKKLTMYNKVKEFAREGLSIRQISRKTGMDRVTVRKFLRMTDEEFSAFLALQKRRL
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RKLQPYEQFVKDRVTDYPDCSATQVEDWLKEHHPVFPEVTTRTIYSFVQWIRKAYDLPKP
HHCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
KGTPRAYHPVEQLPYGEQAQVDFGEYWMASADACKVKVHFMIMLLSRSRRKFVSFSQQPI
CCCCCCCCCHHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCC
TTRFVLEAHEQAFSFFEGIPHTLVYDQDSTIVTDENRGAILYTEAFRKYLLHRSLKIHLC
HHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCEEEEHHHHHHHHHHCCCEEEEE
RKSDPESKGKIEAGVKYVKYNFLPGRRFVNLEVLNQEALLWLERTANAKEHATTRLIPDA
CCCCCCCCCCHHHCEEEEEEECCCCCEEEEEEEECCHHHHHHHHCCCCHHHHHHCCCCCC
EWQVEKQHLRPFEPLPYPISGTVGKEYHVRKDNTISYRGNFYSLPVGTYAGPGTLVVLEV
HHHHHHHHCCCCCCCCCCCCCCCCCCEEECCCCEEEECCCEEECCCCCCCCCCEEEEEEE
RQNTLCLYAQEGRLLANHPIESGKGTVVINNNHRRDTSSKLRELQDSLMLLFTNQEHAER
CCCEEEEEECCCEEEECCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHEEEEECHHHHHH
FLESIHNRYPRYSRDQFLHVRNAISGCQQKLIDDALAHCVDHHLFSSGEFHDILHHYRKQ
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
EEKQSHQAVFNTFRPKTLRSDMDRMLSFVPDSSGITTYENIFS
HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7517394 [H]