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The map label for this gene is yjcF [C]

Identifier: 119356875

GI number: 119356875

Start: 1187162

End: 1188424

Strand: Direct

Name: yjcF [C]

Synonym: Cpha266_1048

Alternate gene names: 119356875

Gene position: 1187162-1188424 (Clockwise)

Preceding gene: 119356874

Following gene: 119356876

Centisome position: 37.88

GC content: 49.56

Gene sequence:

>1263_bases
ATGCGCTCTAAAACGATACGTTTTTTTTTACCCATCCTTCTCAATGCGGCTTTGATCCCGGTTTTTTCTTGTCGCGTATC
AGCATTTAACCCATCACATCTTGATTCGCTCAATGCCGGAGTGAAATCGTGGAACAACATGAGAACCCTGCATAAAGATT
TTACCCCTGATCTTTCAGGTGCAATACTCAAGGGTCGCAATCTCAGAGGAGCCGATTTCCAAAACGCCAATTTTTCAGGT
GCCGTGCTGACCGATTCCGATCTCAGCAATGCGAACTTGCGGAATGCTTCGCTTGACGGGGCAAGGATGAGTGGAGCGCT
ACTGATTCGGGCGGATTTTCAGGGTGCCCGCATGCATGCCGTCGATCTTGAGGGCGCAGTGCTTGATGGCGCTCATCTTC
AAAAAGCAGAGCTTCAACAATCGATTCTGCGAAAAGCCGATTGTTCCAATGTTGATTTTTCAGATGCGGATCTTCGCGAC
TGCAATTTTCGGGAGGCGTCGCTGGCCAACGCAACTCTAATCGGTGCGGATTTACAGGCGGCATATCTCTGGAGGGCCAA
TTTCAGCAGGGTAAAGCTCCGTGGCGTCAGGGTATCAGATGCAACTATTCTTGATACCGGACGATATGCCACCGAGGAGT
GGGCCAGAGATCGTCAGGCAGTTTTTCTATCGGCATCCCCATCTGTTGATCCATTGAAAGCTTCTTCTGACGCATCTTCT
GCAGCAGTAGAGGGTGGTTCGAAAAATGCGCGTTCACAAGGGCGCTCTTCTCCAGCTCATCTTGTCCGGAATGCTGCTTC
AACGGCAAATATCTGGAGAAAAGCCGAGATTCAATCGGCGGTTTTGTATGACAGAAAGCAGTACGAGCAACTTAAGCGCA
ATGTTTTCGACTGGAATAAAACGAGAAAACAGAACAGCGCCATGCGTGTTACGCTTCATGGTGCTGATTTTGATCATAAA
AATCTCAGTTATGCTGATTTAGCAGGGGCCGATCTTGCAGCCTCCACGTTCAAGGGTGCTGATCTTGAAGAGAGCGATCT
GAGAAAGGCTGATCTCAGTGGGTGCGATTTTCGGGAAGCGAGTTTGCGTGGAGCCGACCTTGGTGGAGCTGATCTGAGGG
GCGCCAATTTCTGGCGGGCAAATCTCGACCGTATTCGTCTTGATGGTGCTGTTGTTTCCGCTGCAACTGTGCTTGATTCA
GGTAAACATGCTACGTCTGAATGGGCTGTTCGCTTTGGCGTTACATTTGCAGAAGAGAAGTGA

Upstream 100 bases:

>100_bases
CTTGGTCTCTCGGGTCTTCTGTTTGGTTGTTCGGTATTTTTTGTAATTATCAATCTTCGTTCTGAACTCTACGAGGAAGA
ATAAATAACCAGCCTGTATC

Downstream 100 bases:

>100_bases
TCTATCAAGTTTTTGATGTATGAGGGAGAGATGTTCATGAGGGGAAGTATAAACAGACCGATGGTGACGGTAACCATTCC
GTTATATAACAACGTTCGCT

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MRSKTIRFFLPILLNAALIPVFSCRVSAFNPSHLDSLNAGVKSWNNMRTLHKDFTPDLSGAILKGRNLRGADFQNANFSG
AVLTDSDLSNANLRNASLDGARMSGALLIRADFQGARMHAVDLEGAVLDGAHLQKAELQQSILRKADCSNVDFSDADLRD
CNFREASLANATLIGADLQAAYLWRANFSRVKLRGVRVSDATILDTGRYATEEWARDRQAVFLSASPSVDPLKASSDASS
AAVEGGSKNARSQGRSSPAHLVRNAASTANIWRKAEIQSAVLYDRKQYEQLKRNVFDWNKTRKQNSAMRVTLHGADFDHK
NLSYADLAGADLAASTFKGADLEESDLRKADLSGCDFREASLRGADLGGADLRGANFWRANLDRIRLDGAVVSAATVLDS
GKHATSEWAVRFGVTFAEEK

Sequences:

>Translated_420_residues
MRSKTIRFFLPILLNAALIPVFSCRVSAFNPSHLDSLNAGVKSWNNMRTLHKDFTPDLSGAILKGRNLRGADFQNANFSG
AVLTDSDLSNANLRNASLDGARMSGALLIRADFQGARMHAVDLEGAVLDGAHLQKAELQQSILRKADCSNVDFSDADLRD
CNFREASLANATLIGADLQAAYLWRANFSRVKLRGVRVSDATILDTGRYATEEWARDRQAVFLSASPSVDPLKASSDASS
AAVEGGSKNARSQGRSSPAHLVRNAASTANIWRKAEIQSAVLYDRKQYEQLKRNVFDWNKTRKQNSAMRVTLHGADFDHK
NLSYADLAGADLAASTFKGADLEESDLRKADLSGCDFREASLRGADLGGADLRGANFWRANLDRIRLDGAVVSAATVLDS
GKHATSEWAVRFGVTFAEEK
>Mature_420_residues
MRSKTIRFFLPILLNAALIPVFSCRVSAFNPSHLDSLNAGVKSWNNMRTLHKDFTPDLSGAILKGRNLRGADFQNANFSG
AVLTDSDLSNANLRNASLDGARMSGALLIRADFQGARMHAVDLEGAVLDGAHLQKAELQQSILRKADCSNVDFSDADLRD
CNFREASLANATLIGADLQAAYLWRANFSRVKLRGVRVSDATILDTGRYATEEWARDRQAVFLSASPSVDPLKASSDASS
AAVEGGSKNARSQGRSSPAHLVRNAASTANIWRKAEIQSAVLYDRKQYEQLKRNVFDWNKTRKQNSAMRVTLHGADFDHK
NLSYADLAGADLAASTFKGADLEESDLRKADLSGCDFREASLRGADLGGADLRGANFWRANLDRIRLDGAVVSAATVLDS
GKHATSEWAVRFGVTFAEEK

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 7 pentapeptide repeat domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 45713; Mature: 45713

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSKTIRFFLPILLNAALIPVFSCRVSAFNPSHLDSLNAGVKSWNNMRTLHKDFTPDLSG
CCCCHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AILKGRNLRGADFQNANFSGAVLTDSDLSNANLRNASLDGARMSGALLIRADFQGARMHA
CEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
VDLEGAVLDGAHLQKAELQQSILRKADCSNVDFSDADLRDCNFREASLANATLIGADLQA
EECCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCCEE
AYLWRANFSRVKLRGVRVSDATILDTGRYATEEWARDRQAVFLSASPSVDPLKASSDASS
EEEEECCCCEEEEEEEEECCCEEEECCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCH
AAVEGGSKNARSQGRSSPAHLVRNAASTANIWRKAEIQSAVLYDRKQYEQLKRNVFDWNK
HHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
TRKQNSAMRVTLHGADFDHKNLSYADLAGADLAASTFKGADLEESDLRKADLSGCDFREA
HHCCCCEEEEEEECCCCCCCCCCHHHCCCCCHHHHHCCCCCCCHHHHHHHCCCCCCCHHH
SLRGADLGGADLRGANFWRANLDRIRLDGAVVSAATVLDSGKHATSEWAVRFGVTFAEEK
HCCCCCCCCCCCCCCCEEECCCCEEEECCHHHHHHHHHCCCCCCCCCEEEEECEEECCCC
>Mature Secondary Structure
MRSKTIRFFLPILLNAALIPVFSCRVSAFNPSHLDSLNAGVKSWNNMRTLHKDFTPDLSG
CCCCHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
AILKGRNLRGADFQNANFSGAVLTDSDLSNANLRNASLDGARMSGALLIRADFQGARMHA
CEEECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEE
VDLEGAVLDGAHLQKAELQQSILRKADCSNVDFSDADLRDCNFREASLANATLIGADLQA
EECCCEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCEEEEECCCEE
AYLWRANFSRVKLRGVRVSDATILDTGRYATEEWARDRQAVFLSASPSVDPLKASSDASS
EEEEECCCCEEEEEEEEECCCEEEECCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCH
AAVEGGSKNARSQGRSSPAHLVRNAASTANIWRKAEIQSAVLYDRKQYEQLKRNVFDWNK
HHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
TRKQNSAMRVTLHGADFDHKNLSYADLAGADLAASTFKGADLEESDLRKADLSGCDFREA
HHCCCCEEEEEEECCCCCCCCCCHHHCCCCCHHHHHCCCCCCCHHHHHHHCCCCCCCHHH
SLRGADLGGADLRGANFWRANLDRIRLDGAVVSAATVLDSGKHATSEWAVRFGVTFAEEK
HCCCCCCCCCCCCCCCEEECCCCEEEECCHHHHHHHHHCCCCCCCCCEEEEECEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]