| Definition | Pelobacter propionicus DSM 2379 chromosome, complete genome. |
|---|---|
| Accession | NC_008609 |
| Length | 4,008,000 |
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The map label for this gene is atoS [C]
Identifier: 118581064
GI number: 118581064
Start: 2879780
End: 2881936
Strand: Direct
Name: atoS [C]
Synonym: Ppro_2652
Alternate gene names: 118581064
Gene position: 2879780-2881936 (Clockwise)
Preceding gene: 118581058
Following gene: 118581065
Centisome position: 71.85
GC content: 48.54
Gene sequence:
>2157_bases GTGAACATTCTGATCGTTGAAGACAATCCCAATGAACGAGAAATCTTGCGCTTCACCCTGGAACGACACGGATGCATGGT GATCGAAGCAGCGGATGGACTGGAAGGTCTCGACCTTGCCATTCACCGCCAACCGGATATTATCGTATCCAACACACTCA TGCCACGAATGGATGGCTTTCAACTCCTCTGGGCTTTGAAGGCCGACCCAAAACTCACCTCGATCCCCTTTCTCTTCTAT TCGGACACCTTCACCGGAGAGCAGGAAGAAAAACTCGCCATTTCTCTGGGGGCAGCAGCATTTATTGTCAAAAACAAAGC TCCGGAGAGCGTGTGGCTGCAGGCTGACGCGGCGATCACCGCGACCAGCAAGCCCCAGAAAACGATAGTATACCCGACAA TCGACAAAAGCGACCGGAAGCATCTCCGGGAATATGGCCGGATCGTGGCGACCAAACTCGAGGAGAAGGTGCGCGAACTT CAGGCTGCCCTGACCGAGCGCAGACAGGTTGTCGATGAAATAAAAACTCTTAAATCAGAGCTAGCAATTAGAGCATCGGA ATTTAAGCGGGCGGAGGACACTATTAAAGAGCAGGAACAACAGCTCTCGAATTTTTTTGAAGTCGCCCCATTTCCACTAC TACTTCTGGATGGAGAACTGCGAATTCGCAGAATCAACAAACATGGGTGTTCACTCACCGGATCGCCTGCTATTGACATG CTCGGCCTGAGAAGCGGAGAGGCATTGCGCTGCATCCACGCGCTGGACACTCCCGAAGGTTGTGGTTTTGGACCAAACTG CCGAGAATGCTTGTTGCGTATTTGCATCAAAAATTGCCTAAATAGTGAGCAACAGTATTCCTGTAAAGAAGTGAGTCTGC CGTTATCAGCCAAAGACAGCGAGACTAATCTCACATTCATCCTTTCAATTTCCAGGGCAACCACAGGAAAACAGGACATG CTGCTCATCACCCTGCAGGACATAACCGCACAAAAAACACTTGAACGGAAACTTCATTACGCTCAGAAGATGGAGGCAGC CGGCATACTGGCTGGCGGGATCGCCCATGAATGCAACAGCCACCTGTCCACAATAGTCGGATACGGGAACACTACCCTCA TGAGTATGTCCAGAAACGATCCCAATCGACAAAATGTGGAGCAAATCGTGACGAATGCCAAAAAAGCTGCACATCTGACA AATAAACTCAAGATTTTTTGCAGAAAGCAGTCAGGCGAAAAGAAAAACATAAATCTGAACGAAACCATTTTATCGATGCA GAACAACCTGTTGCGGCTCTTCGGCCAAGATATTAACTGCACAACCTTGATATCGGATCAAGAACTGACGGTTTGTGCTG ACAAGCACCACCTTGAACTCCTCTTAACATGTCTCATCAATAAGATTCTTGATACCACACAAAGGGGCGGGTCACTGACG ATCACCACAGATCAGACCAGACTCGGCCCCGATGTATGTGCAATCAACGATTTAAAAACACGCAATTCCTATGCCCTGCT GACAGTGACACACAGCAACGCCAGCATGGGCAGTGACGATCTGGAACACATATTCAATCCGCTTTTCAGCATACAGGAAC AGAGCAAGTGGCCGGAACTACAACTCTCTCTTATTTCACACATCATCAAGCAGCACGAAAGTCACATAACCGTATTCAGC GAACCAGGCAAAGGGACGGCGTTCAGGATATATATCCCGCTGGTCTCATCTACAGCAACAGACAGAGACAAAGCATTGGA GAACGAAAAATCCGGAAAAGGGGGAGAAACCATCCTGCTGGCAGAAGACGATGAAGCGGTGCGGAATATGGCTGAGGCCA TACTGCAGCATTTCGGTTACGAGGTTATCGTTGCCGTTGACGGGGAAGACGCCGTTCAGAAGTACCTGAAACACGCTGAG AGAATTAATCTGCTTCTATTCGATCTGGTCATGCCCAAAATGAGCGGACAGGAAGCTTATGTCGAAATCAAAAAGCATGC TCCCAATATAAAGGTAGTATTCGCCAGCGGCCATACGCCTGAGATCATCAAACAGCGAAAACTAGTCGATGAAAATGCAC TATTGATATTCAAACCATATTTGCCATCGGTTTTCCTACAGAAGGTGCGCAGCGCGCTTGATAGCATCACGCTGTAG
Upstream 100 bases:
>100_bases CGTCGAGCATCCTCATTCAAAAAGTCCAGCTTGCATACGACTAAAGCATGGCCGACGGATCAAGAAATTTACTATACATG TCCACAGGGCGAGCAACCGA
Downstream 100 bases:
>100_bases GTGACGGCCAACCGCCACCATTGGGTACCGACAGAGCCGCTGCAGGAGAAAACAGAACCTTTTCCCTTGACAGCGCCACA AAAATCATTTAAACATTACA
Product: histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 718; Mature: 718
Protein sequence:
>718_residues MNILIVEDNPNEREILRFTLERHGCMVIEAADGLEGLDLAIHRQPDIIVSNTLMPRMDGFQLLWALKADPKLTSIPFLFY SDTFTGEQEEKLAISLGAAAFIVKNKAPESVWLQADAAITATSKPQKTIVYPTIDKSDRKHLREYGRIVATKLEEKVREL QAALTERRQVVDEIKTLKSELAIRASEFKRAEDTIKEQEQQLSNFFEVAPFPLLLLDGELRIRRINKHGCSLTGSPAIDM LGLRSGEALRCIHALDTPEGCGFGPNCRECLLRICIKNCLNSEQQYSCKEVSLPLSAKDSETNLTFILSISRATTGKQDM LLITLQDITAQKTLERKLHYAQKMEAAGILAGGIAHECNSHLSTIVGYGNTTLMSMSRNDPNRQNVEQIVTNAKKAAHLT NKLKIFCRKQSGEKKNINLNETILSMQNNLLRLFGQDINCTTLISDQELTVCADKHHLELLLTCLINKILDTTQRGGSLT ITTDQTRLGPDVCAINDLKTRNSYALLTVTHSNASMGSDDLEHIFNPLFSIQEQSKWPELQLSLISHIIKQHESHITVFS EPGKGTAFRIYIPLVSSTATDRDKALENEKSGKGGETILLAEDDEAVRNMAEAILQHFGYEVIVAVDGEDAVQKYLKHAE RINLLLFDLVMPKMSGQEAYVEIKKHAPNIKVVFASGHTPEIIKQRKLVDENALLIFKPYLPSVFLQKVRSALDSITL
Sequences:
>Translated_718_residues MNILIVEDNPNEREILRFTLERHGCMVIEAADGLEGLDLAIHRQPDIIVSNTLMPRMDGFQLLWALKADPKLTSIPFLFY SDTFTGEQEEKLAISLGAAAFIVKNKAPESVWLQADAAITATSKPQKTIVYPTIDKSDRKHLREYGRIVATKLEEKVREL QAALTERRQVVDEIKTLKSELAIRASEFKRAEDTIKEQEQQLSNFFEVAPFPLLLLDGELRIRRINKHGCSLTGSPAIDM LGLRSGEALRCIHALDTPEGCGFGPNCRECLLRICIKNCLNSEQQYSCKEVSLPLSAKDSETNLTFILSISRATTGKQDM LLITLQDITAQKTLERKLHYAQKMEAAGILAGGIAHECNSHLSTIVGYGNTTLMSMSRNDPNRQNVEQIVTNAKKAAHLT NKLKIFCRKQSGEKKNINLNETILSMQNNLLRLFGQDINCTTLISDQELTVCADKHHLELLLTCLINKILDTTQRGGSLT ITTDQTRLGPDVCAINDLKTRNSYALLTVTHSNASMGSDDLEHIFNPLFSIQEQSKWPELQLSLISHIIKQHESHITVFS EPGKGTAFRIYIPLVSSTATDRDKALENEKSGKGGETILLAEDDEAVRNMAEAILQHFGYEVIVAVDGEDAVQKYLKHAE RINLLLFDLVMPKMSGQEAYVEIKKHAPNIKVVFASGHTPEIIKQRKLVDENALLIFKPYLPSVFLQKVRSALDSITL >Mature_718_residues MNILIVEDNPNEREILRFTLERHGCMVIEAADGLEGLDLAIHRQPDIIVSNTLMPRMDGFQLLWALKADPKLTSIPFLFY SDTFTGEQEEKLAISLGAAAFIVKNKAPESVWLQADAAITATSKPQKTIVYPTIDKSDRKHLREYGRIVATKLEEKVREL QAALTERRQVVDEIKTLKSELAIRASEFKRAEDTIKEQEQQLSNFFEVAPFPLLLLDGELRIRRINKHGCSLTGSPAIDM LGLRSGEALRCIHALDTPEGCGFGPNCRECLLRICIKNCLNSEQQYSCKEVSLPLSAKDSETNLTFILSISRATTGKQDM LLITLQDITAQKTLERKLHYAQKMEAAGILAGGIAHECNSHLSTIVGYGNTTLMSMSRNDPNRQNVEQIVTNAKKAAHLT NKLKIFCRKQSGEKKNINLNETILSMQNNLLRLFGQDINCTTLISDQELTVCADKHHLELLLTCLINKILDTTQRGGSLT ITTDQTRLGPDVCAINDLKTRNSYALLTVTHSNASMGSDDLEHIFNPLFSIQEQSKWPELQLSLISHIIKQHESHITVFS EPGKGTAFRIYIPLVSSTATDRDKALENEKSGKGGETILLAEDDEAVRNMAEAILQHFGYEVIVAVDGEDAVQKYLKHAE RINLLLFDLVMPKMSGQEAYVEIKKHAPNIKVVFASGHTPEIIKQRKLVDENALLIFKPYLPSVFLQKVRSALDSITL
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=305, Percent_Identity=22.2950819672131, Blast_Score=70, Evalue=5e-13, Organism=Escherichia coli, GI1790436, Length=253, Percent_Identity=23.7154150197628, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 80247; Mature: 80247
Theoretical pI: Translated: 6.67; Mature: 6.67
Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNILIVEDNPNEREILRFTLERHGCMVIEAADGLEGLDLAIHRQPDIIVSNTLMPRMDGF CEEEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEECCCCEEEECCCCCCCCCE QLLWALKADPKLTSIPFLFYSDTFTGEQEEKLAISLGAAAFIVKNKAPESVWLQADAAIT EEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCEEEEECCEEE ATSKPQKTIVYPTIDKSDRKHLREYGRIVATKLEEKVRELQAALTERRQVVDEIKTLKSE ECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAIRASEFKRAEDTIKEQEQQLSNFFEVAPFPLLLLDGELRIRRINKHGCSLTGSPAIDM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEE LGLRSGEALRCIHALDTPEGCGFGPNCRECLLRICIKNCLNSEQQYSCKEVSLPLSAKDS EECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCC ETNLTFILSISRATTGKQDMLLITLQDITAQKTLERKLHYAQKMEAAGILAGGIAHECNS CCCEEEEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH HLSTIVGYGNTTLMSMSRNDPNRQNVEQIVTNAKKAAHLTNKLKIFCRKQSGEKKNINLN HHHHHEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHH ETILSMQNNLLRLFGQDINCTTLISDQELTVCADKHHLELLLTCLINKILDTTQRGGSLT HHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE ITTDQTRLGPDVCAINDLKTRNSYALLTVTHSNASMGSDDLEHIFNPLFSIQEQSKWPEL EEECCCCCCCCEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHH QLSLISHIIKQHESHITVFSEPGKGTAFRIYIPLVSSTATDRDKALENEKSGKGGETILL HHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEECCCCCCHHHHHCCCCCCCCCCEEEE AEDDEAVRNMAEAILQHFGYEVIVAVDGEDAVQKYLKHAERINLLLFDLVMPKMSGQEAY ECCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHE VEIKKHAPNIKVVFASGHTPEIIKQRKLVDENALLIFKPYLPSVFLQKVRSALDSITL EEEECCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNILIVEDNPNEREILRFTLERHGCMVIEAADGLEGLDLAIHRQPDIIVSNTLMPRMDGF CEEEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEEECCCCEEEECCCCCCCCCE QLLWALKADPKLTSIPFLFYSDTFTGEQEEKLAISLGAAAFIVKNKAPESVWLQADAAIT EEEEEEECCCCCCCCCEEEEECCCCCCCCCEEEEEECCEEEEEECCCCCCEEEEECCEEE ATSKPQKTIVYPTIDKSDRKHLREYGRIVATKLEEKVRELQAALTERRQVVDEIKTLKSE ECCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LAIRASEFKRAEDTIKEQEQQLSNFFEVAPFPLLLLDGELRIRRINKHGCSLTGSPAIDM HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCCCCCCCCEE LGLRSGEALRCIHALDTPEGCGFGPNCRECLLRICIKNCLNSEQQYSCKEVSLPLSAKDS EECCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCC ETNLTFILSISRATTGKQDMLLITLQDITAQKTLERKLHYAQKMEAAGILAGGIAHECNS CCCEEEEEEEECCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH HLSTIVGYGNTTLMSMSRNDPNRQNVEQIVTNAKKAAHLTNKLKIFCRKQSGEKKNINLN HHHHHEECCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCCCHH ETILSMQNNLLRLFGQDINCTTLISDQELTVCADKHHLELLLTCLINKILDTTQRGGSLT HHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEE ITTDQTRLGPDVCAINDLKTRNSYALLTVTHSNASMGSDDLEHIFNPLFSIQEQSKWPEL EEECCCCCCCCEEEECCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCHH QLSLISHIIKQHESHITVFSEPGKGTAFRIYIPLVSSTATDRDKALENEKSGKGGETILL HHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEEEECCCCCCHHHHHCCCCCCCCCCEEEE AEDDEAVRNMAEAILQHFGYEVIVAVDGEDAVQKYLKHAERINLLLFDLVMPKMSGQEAY ECCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHE VEIKKHAPNIKVVFASGHTPEIIKQRKLVDENALLIFKPYLPSVFLQKVRSALDSITL EEEECCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA