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The map label for this gene is yiaD [H]

Identifier: 118578992

GI number: 118578992

Start: 589521

End: 590195

Strand: Direct

Name: yiaD [H]

Synonym: Ppro_0553

Alternate gene names: 118578992

Gene position: 589521-590195 (Clockwise)

Preceding gene: 118578991

Following gene: 118578995

Centisome position: 14.71

GC content: 56.15

Gene sequence:

>675_bases
ATGAAATCTAAATGGGTTGTGAAGGTCATTGTTTGCGCTTCAACGGTGGGTCTCATGATGGGTGGTTGTGCTACAAACCC
GGATGGCAGCTACGAGTACAAGAGGACCGCCATCGGTGGAGTGGGCGGTGCTGCAGTAGGCGCAGGTCTTGGTGCGCTGA
TCGGCGGGGGGAAAGGAGCGGCGATCGGCGGGCTGTCCGGCGCGGTTGTTGGTGGTGGCATTGGTAACTATATGGACCGG
CAGGCGGCTGCCTTAAAGAAGAATATGCCTGAAGCGGAAGTAGTCCGCGATGGAGAGAACGTGTATGTCGCCTTGCCATC
AGGAATCCTGTTTGACACCGGGAAGGACGAGCTGAAAACGTCGGCGAAAGAATCGCTGGCCAAGGCCGCGGCTACGCTAA
AGAGTTCCGAAACCAACATCATCATCCAGGGCCACACCGATTCGACCGGTTCCGATAAGATTAACCAGCCACTCAGTCAA
AGGCGGGCCAATCAGGTTCGCGACTTTCTTGCTGCCAACGGCGTTCCAAGCTCCAGGATGACGGCAATCGGGTACGGCTC
AAGCCGTCCCGCGGTTCCCAACGATACAGAGGTAAATCGTGCATTGAACCGTCGTGTTCAGTTGGAAATCAGCCCCAATG
AAAAGATCAAGGCCCAGACCAGCGGCAGTAACTAG

Upstream 100 bases:

>100_bases
CTGCAGCCCTGGCAGCATAAGACAGGTTGTCGGTGTCTGCAAACATCATGCAAGCGACTCGTCGCAAGCGCGGTAACTCA
AATAAATGGGGAGGTACGTT

Downstream 100 bases:

>100_bases
TCGAACGCATGAGGTTACCGCCTGCCACTGTCGATTTGGCGCTCAAGTGGTGACGATTTTACCTCAAGTCTTTCTGTTAT
CTGGATTGATGCGAAATAGT

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MKSKWVVKVIVCASTVGLMMGGCATNPDGSYEYKRTAIGGVGGAAVGAGLGALIGGGKGAAIGGLSGAVVGGGIGNYMDR
QAAALKKNMPEAEVVRDGENVYVALPSGILFDTGKDELKTSAKESLAKAAATLKSSETNIIIQGHTDSTGSDKINQPLSQ
RRANQVRDFLAANGVPSSRMTAIGYGSSRPAVPNDTEVNRALNRRVQLEISPNEKIKAQTSGSN

Sequences:

>Translated_224_residues
MKSKWVVKVIVCASTVGLMMGGCATNPDGSYEYKRTAIGGVGGAAVGAGLGALIGGGKGAAIGGLSGAVVGGGIGNYMDR
QAAALKKNMPEAEVVRDGENVYVALPSGILFDTGKDELKTSAKESLAKAAATLKSSETNIIIQGHTDSTGSDKINQPLSQ
RRANQVRDFLAANGVPSSRMTAIGYGSSRPAVPNDTEVNRALNRRVQLEISPNEKIKAQTSGSN
>Mature_224_residues
MKSKWVVKVIVCASTVGLMMGGCATNPDGSYEYKRTAIGGVGGAAVGAGLGALIGGGKGAAIGGLSGAVVGGGIGNYMDR
QAAALKKNMPEAEVVRDGENVYVALPSGILFDTGKDELKTSAKESLAKAAATLKSSETNIIIQGHTDSTGSDKINQPLSQ
RRANQVRDFLAANGVPSSRMTAIGYGSSRPAVPNDTEVNRALNRRVQLEISPNEKIKAQTSGSN

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=228, Percent_Identity=35.5263157894737, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1787191, Length=121, Percent_Identity=33.8842975206612, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786962, Length=101, Percent_Identity=30.6930693069307, Blast_Score=61, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 22965; Mature: 22965

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00107 PROTEIN_KINASE_ATP ; PS01068 OMPA_1 ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKWVVKVIVCASTVGLMMGGCATNPDGSYEYKRTAIGGVGGAAVGAGLGALIGGGKGA
CCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCEEHHHHCCCCCHHHHHHHHHHHHCCCCCC
AIGGLSGAVVGGGIGNYMDRQAAALKKNMPEAEVVRDGENVYVALPSGILFDTGKDELKT
EECCCCCCEECCCHHHHHHHHHHHHHHCCCHHHEEECCCEEEEECCCCEEEECCHHHHHH
SAKESLAKAAATLKSSETNIIIQGHTDSTGSDKINQPLSQRRANQVRDFLAANGVPSSRM
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCE
TAIGYGSSRPAVPNDTEVNRALNRRVQLEISPNEKIKAQTSGSN
EEEECCCCCCCCCCCHHHHHHHCCEEEEEECCCCCEEEECCCCC
>Mature Secondary Structure
MKSKWVVKVIVCASTVGLMMGGCATNPDGSYEYKRTAIGGVGGAAVGAGLGALIGGGKGA
CCCCEEEEHHHHHHHHHHHHCCCCCCCCCCCEEHHHHCCCCCHHHHHHHHHHHHCCCCCC
AIGGLSGAVVGGGIGNYMDRQAAALKKNMPEAEVVRDGENVYVALPSGILFDTGKDELKT
EECCCCCCEECCCHHHHHHHHHHHHHHCCCHHHEEECCCEEEEECCCCEEEECCHHHHHH
SAKESLAKAAATLKSSETNIIIQGHTDSTGSDKINQPLSQRRANQVRDFLAANGVPSSRM
HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCE
TAIGYGSSRPAVPNDTEVNRALNRRVQLEISPNEKIKAQTSGSN
EEEECCCCCCCCCCCHHHHHHHCCEEEEEECCCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]