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The map label for this gene is yfjR [H]

Identifier: 118578663

GI number: 118578663

Start: 214686

End: 215591

Strand: Direct

Name: yfjR [H]

Synonym: Ppro_0219

Alternate gene names: 118578663

Gene position: 214686-215591 (Clockwise)

Preceding gene: 118578662

Following gene: 118578664

Centisome position: 5.36

GC content: 48.34

Gene sequence:

>906_bases
ATGACTACTGGTAACCATGACACCCTCGTTTATCGACTGGCACAAATTCTGGTCAAGCTGAATCAGGGTGAAAAACTTGA
TCCTTTGACGCTTGCAGATGAGTTCGGCGTCAACCTGCGCACAATCCAGCGTGACCTGAACGTGAGGTTTGCCTATCTCC
CCTTGCAAAAAACTGATGGACGTTATCATCTCGATCCAGCCTATCTTGGCAAACTCAGCACTCGTGACATTGAGCGGTTC
GCCAGTCTGGCCGGAGTTCGTGGTTTATTCCCAACACTTTCCGACGACTTCCTTGGTGATATATTTGATAGCCGTATGCA
ATCGGCGCTTCTGGTCAAAGGGCACAACTATGAAGACCTTGCCGGAAAGGAAGATGTTTTTCGCCATTTGGAGAGGGCCA
TTGTTGCTCGCTGCCATATCTCTTTTGACTACGCAAAGGACGAAGGAATCAAATCCTACACCGTCGTCGCCCCGTTCAAG
CTGATCAATAACAAGGGCATCTGGTATCTTGTTGCGCGTGACGGTGACAAACTCAAAACATTTTCGTTCGCCAGAATTGA
ACGGGTGGTTCAACTTGACTCCCGATTTGCTCATGAACCGGAAACTGACAGGATGCTGAAAGAGGAAGATGGTGTATGGC
TTGGTGAGGAGAAAAAGGAGATAGTCCTCAAGATATCCCGTGACATTGCCAACTACTTCAAACGCCGGAAATTGATTGCC
AATCAAGTTATTGAAAAGGAGCTTGAAGACGGGGGCCTCATCGTCTCTGCAAAGGTTGGTCATGTAAATCAGGTGTTACC
CATCGTTCGTTACTGGATTCCCCATATCCGCGTCATCAGTCCGGAGGGTTTGCAAGAGGAGATGGAAAAGGACTTACGGA
ATTACTTGGAGCGGACCGGTGGTTAA

Upstream 100 bases:

>100_bases
GCACCATAAAGAGTGTATTGTTTTATCTGTTCAGGAGCACGCCACAAAGATTATGTTTTCTTGCAATCAATCACAACACA
CTTTGCATTAGGGTCCGGAT

Downstream 100 bases:

>100_bases
CCGCTAAACAAGGGAGGGCTAGTATCATGAAAGTAATCGGGCTTTTGATCGTATTTTGCGGTGCCATCTGGGTGTTTTGC
GACGCCAGAGCCAGAGAAAA

Product: helix-turn-helix, type 11 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MTTGNHDTLVYRLAQILVKLNQGEKLDPLTLADEFGVNLRTIQRDLNVRFAYLPLQKTDGRYHLDPAYLGKLSTRDIERF
ASLAGVRGLFPTLSDDFLGDIFDSRMQSALLVKGHNYEDLAGKEDVFRHLERAIVARCHISFDYAKDEGIKSYTVVAPFK
LINNKGIWYLVARDGDKLKTFSFARIERVVQLDSRFAHEPETDRMLKEEDGVWLGEEKKEIVLKISRDIANYFKRRKLIA
NQVIEKELEDGGLIVSAKVGHVNQVLPIVRYWIPHIRVISPEGLQEEMEKDLRNYLERTGG

Sequences:

>Translated_301_residues
MTTGNHDTLVYRLAQILVKLNQGEKLDPLTLADEFGVNLRTIQRDLNVRFAYLPLQKTDGRYHLDPAYLGKLSTRDIERF
ASLAGVRGLFPTLSDDFLGDIFDSRMQSALLVKGHNYEDLAGKEDVFRHLERAIVARCHISFDYAKDEGIKSYTVVAPFK
LINNKGIWYLVARDGDKLKTFSFARIERVVQLDSRFAHEPETDRMLKEEDGVWLGEEKKEIVLKISRDIANYFKRRKLIA
NQVIEKELEDGGLIVSAKVGHVNQVLPIVRYWIPHIRVISPEGLQEEMEKDLRNYLERTGG
>Mature_300_residues
TTGNHDTLVYRLAQILVKLNQGEKLDPLTLADEFGVNLRTIQRDLNVRFAYLPLQKTDGRYHLDPAYLGKLSTRDIERFA
SLAGVRGLFPTLSDDFLGDIFDSRMQSALLVKGHNYEDLAGKEDVFRHLERAIVARCHISFDYAKDEGIKSYTVVAPFKL
INNKGIWYLVARDGDKLKTFSFARIERVVQLDSRFAHEPETDRMLKEEDGVWLGEEKKEIVLKISRDIANYFKRRKLIAN
QVIEKELEDGGLIVSAKVGHVNQVLPIVRYWIPHIRVISPEGLQEEMEKDLRNYLERTGG

Specific function: Unknown

COG id: COG2378

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788988, Length=209, Percent_Identity=28.7081339712919, Blast_Score=75, Evalue=8e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 34603; Mature: 34472

Theoretical pI: Translated: 7.29; Mature: 7.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTGNHDTLVYRLAQILVKLNQGEKLDPLTLADEFGVNLRTIQRDLNVRFAYLPLQKTDG
CCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHCCHHHHHHHHHCEEEEEEEEEECCC
RYHLDPAYLGKLSTRDIERFASLAGVRGLFPTLSDDFLGDIFDSRMQSALLVKGHNYEDL
CEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEECCCCHHC
AGKEDVFRHLERAIVARCHISFDYAKDEGIKSYTVVAPFKLINNKGIWYLVARDGDKLKT
CCHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEEHHHEECCCCEEEEEECCCCCCHH
FSFARIERVVQLDSRFAHEPETDRMLKEEDGVWLGEEKKEIVLKISRDIANYFKRRKLIA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH
NQVIEKELEDGGLIVSAKVGHVNQVLPIVRYWIPHIRVISPEGLQEEMEKDLRNYLERTG
HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCC
G
C
>Mature Secondary Structure 
TTGNHDTLVYRLAQILVKLNQGEKLDPLTLADEFGVNLRTIQRDLNVRFAYLPLQKTDG
CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHCCHHHHHHHHHCEEEEEEEEEECCC
RYHLDPAYLGKLSTRDIERFASLAGVRGLFPTLSDDFLGDIFDSRMQSALLVKGHNYEDL
CEEECHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEEEECCCCHHC
AGKEDVFRHLERAIVARCHISFDYAKDEGIKSYTVVAPFKLINNKGIWYLVARDGDKLKT
CCHHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEEHHHEECCCCEEEEEECCCCCCHH
FSFARIERVVQLDSRFAHEPETDRMLKEEDGVWLGEEKKEIVLKISRDIANYFKRRKLIA
HHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHH
NQVIEKELEDGGLIVSAKVGHVNQVLPIVRYWIPHIRVISPEGLQEEMEKDLRNYLERTG
HHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]