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The map label for this gene is radC [C]

Identifier: 118578660

GI number: 118578660

Start: 211797

End: 212288

Strand: Direct

Name: radC [C]

Synonym: Ppro_0216

Alternate gene names: 118578660

Gene position: 211797-212288 (Clockwise)

Preceding gene: 118578659

Following gene: 118578661

Centisome position: 5.28

GC content: 54.67

Gene sequence:

>492_bases
ATGAATTTTAATCTCTTCGGTGAACCGGTACCGCCGGTCACTAAACGAATCATGGTGCGCTCAATTGAGGCCCGCTACAG
AAACGAAGTCGTGCGCGACGATGCTCCGGAATGGGTATCGATGCGCTTCACGAAACCAGAGCAGGTCTATGAGATGTTCC
GGGATCTCCGGCGTGAGACGAAGGAGCATTTTGTGGTGTTGCATCTCGACGGCAAGAACCGGATCGTCTGTTTTGACCGG
GTCTCCATCGGTTCGCTCAACCAGGCCATCGTTCATCCCCGGGAGGTGTTCAAGACGGCATGCCTGTCGAATGCGGCAGC
CATTCTGCTTGTTCACAACCATCCGACCGGAGATCCGAACCCCAGCAGCGAAGATATCGCCATCACCAAGCGTCTCAAGG
AGAGCGGCGACATCCTCGGCATCCGGGTACTGGATCACATAATCGTCGGTGATGACGAGTTCCTGAGTTTTGTCGAGCGG
GGACTTTTATAA

Upstream 100 bases:

>100_bases
CCGTACTGGCTCTCCAGAGCTGAAAATAATTTATTTCAAACCCTTTGGGGGCGATGACTGCCCCCCAGGGGGAAGTCCGC
CCCCGCTATCGGAGGAGGAC

Downstream 100 bases:

>100_bases
ATAACGGGGGAGCGGCGCTCTAAGCGCCCTCCCTCGACTCTTCCCCCCGGCTCAAGAGGGTTCCTTAGAGCCACCGTTCC
GGCGGTGGTTGTAGGGAGCC

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MNFNLFGEPVPPVTKRIMVRSIEARYRNEVVRDDAPEWVSMRFTKPEQVYEMFRDLRRETKEHFVVLHLDGKNRIVCFDR
VSIGSLNQAIVHPREVFKTACLSNAAAILLVHNHPTGDPNPSSEDIAITKRLKESGDILGIRVLDHIIVGDDEFLSFVER
GLL

Sequences:

>Translated_163_residues
MNFNLFGEPVPPVTKRIMVRSIEARYRNEVVRDDAPEWVSMRFTKPEQVYEMFRDLRRETKEHFVVLHLDGKNRIVCFDR
VSIGSLNQAIVHPREVFKTACLSNAAAILLVHNHPTGDPNPSSEDIAITKRLKESGDILGIRVLDHIIVGDDEFLSFVER
GLL
>Mature_163_residues
MNFNLFGEPVPPVTKRIMVRSIEARYRNEVVRDDAPEWVSMRFTKPEQVYEMFRDLRRETKEHFVVLHLDGKNRIVCFDR
VSIGSLNQAIVHPREVFKTACLSNAAAILLVHNHPTGDPNPSSEDIAITKRLKESGDILGIRVLDHIIVGDDEFLSFVER
GLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=138, Percent_Identity=39.8550724637681, Blast_Score=107, Evalue=4e-25,
Organism=Escherichia coli, GI1788997, Length=103, Percent_Identity=45.6310679611651, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=42.6229508196721, Blast_Score=101, Evalue=3e-23,
Organism=Escherichia coli, GI1788312, Length=103, Percent_Identity=45.6310679611651, Blast_Score=100, Evalue=7e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001405 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 18680; Mature: 18680

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNFNLFGEPVPPVTKRIMVRSIEARYRNEVVRDDAPEWVSMRFTKPEQVYEMFRDLRRET
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHH
KEHFVVLHLDGKNRIVCFDRVSIGSLNQAIVHPREVFKTACLSNAAAILLVHNHPTGDPN
HHCEEEEEECCCCEEEEEECCCCCCCHHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCCC
PSSEDIAITKRLKESGDILGIRVLDHIIVGDDEFLSFVERGLL
CCCCCHHHHHHHHHCCCEEEHHHHHHHHCCCHHHHHHHHHCCC
>Mature Secondary Structure
MNFNLFGEPVPPVTKRIMVRSIEARYRNEVVRDDAPEWVSMRFTKPEQVYEMFRDLRRET
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHH
KEHFVVLHLDGKNRIVCFDRVSIGSLNQAIVHPREVFKTACLSNAAAILLVHNHPTGDPN
HHCEEEEEECCCCEEEEEECCCCCCCHHHHCCHHHHHHHHHHCCCEEEEEEECCCCCCCC
PSSEDIAITKRLKESGDILGIRVLDHIIVGDDEFLSFVERGLL
CCCCCHHHHHHHHHCCCEEEHHHHHHHHCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA