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The map label for this gene is ihfA [H]

Identifier: 118578624

GI number: 118578624

Start: 182937

End: 183212

Strand: Direct

Name: ihfA [H]

Synonym: Ppro_0180

Alternate gene names: 118578624

Gene position: 182937-183212 (Clockwise)

Preceding gene: 118578623

Following gene: 118578625

Centisome position: 4.56

GC content: 50.36

Gene sequence:

>276_bases
ATGACCAAAGCAGATATTGTTGAAAGAATCCATGCCGGCACGGGCATGACTCAGAAGGAGTCGGCAGAAATGATGGAGAC
GGTCTTTTCTATCATGAAATCGACTCTCGAAACCGGGGAGACACTGAAAATTTCTGGTTTTGGCAGTTTCGTGGTGAAAC
AGAAAAACGCTCGGCGGGGTCGGAACCCGCAGACGGGCGAAACGATCACGATCGAGGCACGACGTGTATTGTCGTTCAAG
CCAAGCACCGTGCTGCGCGATGTAATCAACAAGTAA

Upstream 100 bases:

>100_bases
GTCGAAACTGAAGTGCTTGATGCCTTTAAGGAACTGGATAACGTCTGAGTTGTGCACTTGCGCTATATTGGGAACCTATA
ATACCTCTGAGGGCGATGAA

Downstream 100 bases:

>100_bases
CAGGTGCCGGTCGACGAGGATGTTGCCTTATGAAATTTGGAATTCGCACTCCGTCTCTGACGAAACGAATTGCAGCACGG
ACATCATTGAAAAGACACGT

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: IHF-alpha [H]

Number of amino acids: Translated: 91; Mature: 90

Protein sequence:

>91_residues
MTKADIVERIHAGTGMTQKESAEMMETVFSIMKSTLETGETLKISGFGSFVVKQKNARRGRNPQTGETITIEARRVLSFK
PSTVLRDVINK

Sequences:

>Translated_91_residues
MTKADIVERIHAGTGMTQKESAEMMETVFSIMKSTLETGETLKISGFGSFVVKQKNARRGRNPQTGETITIEARRVLSFK
PSTVLRDVINK
>Mature_90_residues
TKADIVERIHAGTGMTQKESAEMMETVFSIMKSTLETGETLKISGFGSFVVKQKNARRGRNPQTGETITIEARRVLSFKP
STVLRDVINK

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1788005, Length=86, Percent_Identity=43.0232558139535, Blast_Score=86, Evalue=6e-19,
Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=35.5555555555556, Blast_Score=78, Evalue=9e-17,
Organism=Escherichia coli, GI1787141, Length=95, Percent_Identity=38.9473684210526, Blast_Score=68, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005684 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10118; Mature: 9987

Theoretical pI: Translated: 10.77; Mature: 10.77

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKADIVERIHAGTGMTQKESAEMMETVFSIMKSTLETGETLKISGFGSFVVKQKNARRG
CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCC
RNPQTGETITIEARRVLSFKPSTVLRDVINK
CCCCCCCEEEEEEHHHHCCCCHHHHHHHHCC
>Mature Secondary Structure 
TKADIVERIHAGTGMTQKESAEMMETVFSIMKSTLETGETLKISGFGSFVVKQKNARRG
CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEECCCCCCC
RNPQTGETITIEARRVLSFKPSTVLRDVINK
CCCCCCCEEEEEEHHHHCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA