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The map label for this gene is ydeE [H]

Identifier: 118479955

GI number: 118479955

Start: 4618795

End: 4619673

Strand: Direct

Name: ydeE [H]

Synonym: BALH_4400

Alternate gene names: 118479955

Gene position: 4618795-4619673 (Clockwise)

Preceding gene: 118479952

Following gene: 118479956

Centisome position: 87.86

GC content: 36.63

Gene sequence:

>879_bases
ATGGTTATGGATTCACTTAAAAATATGAATGCAGCAATGCAGTATATTGAAGACAACCTTACACATGAAATTGATTTTAA
GGAAGTCGCAAAAATAGCTTACTGCTCCGAGTATCATTTCAAAAGAATGTTTTCTTTCCTAGCTGGCATATCACTATCAG
AATATATTCGCTGTAGACGTCTTACTCTCGCTGCCTTTGAACTAAAAAATAGTGGTGCAAAAGTTATTGATGTCGCTATA
AAATATGGCTACAATTCACCCGATTCATTCTCTCGTGCCTTTCAGAACTTGCACGGCATAACACCTTCAGAGGCCCGAAG
TAGTAGTCATTCTTTAAAAGCTTATTCACCCATGACCTTCCAATTATCCATTCAAGGAGGACATGAAATGAACTATCGAA
TTGAAGAAAAAGACTCATTTCAAATTATAGGTATTACAAAACGAGTACCAATCGTTTTTAACGGTGTAAATGAAGAAATT
GCTTCTATGTGGAAAAGTTTAAATCCAGAGACTATTCAAACACTAAAGTCCCTTTCAAACATGGAACCTACTGGAATCAT
TAGCGCTTCTACTAACTTTTCTGAAGGCAGAATGGAGGAAAAAGGTGAACTCGATCACTATATTGGAGTAGCCACAACAA
AGGATTGTCCAGAGCAGTTTAAACAACTTGAAGTCGCAGCTTCAACATGGGCTATATTTGAAGCTGTCGGTCCATTTCCT
GAAACATTACAAAATGTATGGGGACGTATTTATTCCGAATGGTTTCCTTCCTCAAACTATGAATTAGCGGAAGGACCGGA
AATATTGTGGAATGAACAGAAAGATATATCTTCTCCAAACTTTAAAAGTGAAATTTGGATACCGGTTTTGAAGAAATAA

Upstream 100 bases:

>100_bases
CATTACAATTTTGTAAGGTACAAAATGTATCCTACAAAGTTGTGCATGAAATGTCGGATGGAGCTATTTTTTTCCTGCTA
TTCTATTTAACAAGGAGGTT

Downstream 100 bases:

>100_bases
AAATAAAGCTGCTTTTCCTTTTTAGGAAGGGCAGCTTTGTTTTACATTTTAGTTCTTTTTAATTGTCAATTATATATACG
CCCTTTTTACTTTTTTCGCT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MVMDSLKNMNAAMQYIEDNLTHEIDFKEVAKIAYCSEYHFKRMFSFLAGISLSEYIRCRRLTLAAFELKNSGAKVIDVAI
KYGYNSPDSFSRAFQNLHGITPSEARSSSHSLKAYSPMTFQLSIQGGHEMNYRIEEKDSFQIIGITKRVPIVFNGVNEEI
ASMWKSLNPETIQTLKSLSNMEPTGIISASTNFSEGRMEEKGELDHYIGVATTKDCPEQFKQLEVAASTWAIFEAVGPFP
ETLQNVWGRIYSEWFPSSNYELAEGPEILWNEQKDISSPNFKSEIWIPVLKK

Sequences:

>Translated_292_residues
MVMDSLKNMNAAMQYIEDNLTHEIDFKEVAKIAYCSEYHFKRMFSFLAGISLSEYIRCRRLTLAAFELKNSGAKVIDVAI
KYGYNSPDSFSRAFQNLHGITPSEARSSSHSLKAYSPMTFQLSIQGGHEMNYRIEEKDSFQIIGITKRVPIVFNGVNEEI
ASMWKSLNPETIQTLKSLSNMEPTGIISASTNFSEGRMEEKGELDHYIGVATTKDCPEQFKQLEVAASTWAIFEAVGPFP
ETLQNVWGRIYSEWFPSSNYELAEGPEILWNEQKDISSPNFKSEIWIPVLKK
>Mature_292_residues
MVMDSLKNMNAAMQYIEDNLTHEIDFKEVAKIAYCSEYHFKRMFSFLAGISLSEYIRCRRLTLAAFELKNSGAKVIDVAI
KYGYNSPDSFSRAFQNLHGITPSEARSSSHSLKAYSPMTFQLSIQGGHEMNYRIEEKDSFQIIGITKRVPIVFNGVNEEI
ASMWKSLNPETIQTLKSLSNMEPTGIISASTNFSEGRMEEKGELDHYIGVATTKDCPEQFKQLEVAASTWAIFEAVGPFP
ETLQNVWGRIYSEWFPSSNYELAEGPEILWNEQKDISSPNFKSEIWIPVLKK

Specific function: Binds To The Right Arm Of The Replication Origin Oric Of The E.Coli Chromosome. Rob Binding May Influence The Formation Of The Nucleoprotein Structure, Required For Oric Function In The Initiation Of Replication. [C]

COG id: COG3708

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=106, Percent_Identity=31.1320754716981, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87081928, Length=98, Percent_Identity=32.6530612244898, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790497, Length=104, Percent_Identity=33.6538461538462, Blast_Score=68, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010499
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF06445 AraC_E_bind; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33207; Mature: 33207

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMDSLKNMNAAMQYIEDNLTHEIDFKEVAKIAYCSEYHFKRMFSFLAGISLSEYIRCRR
CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LTLAAFELKNSGAKVIDVAIKYGYNSPDSFSRAFQNLHGITPSEARSSSHSLKAYSPMTF
HHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHCCCCCCEEEECCEEE
QLSIQGGHEMNYRIEEKDSFQIIGITKRVPIVFNGVNEEIASMWKSLNPETIQTLKSLSN
EEEECCCCCCCEEECCCCCEEEEEEEECCCEEEECCCHHHHHHHHCCCHHHHHHHHHHCC
MEPTGIISASTNFSEGRMEEKGELDHYIGVATTKDCPEQFKQLEVAASTWAIFEAVGPFP
CCCCEEEEECCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
ETLQNVWGRIYSEWFPSSNYELAEGPEILWNEQKDISSPNFKSEIWIPVLKK
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MVMDSLKNMNAAMQYIEDNLTHEIDFKEVAKIAYCSEYHFKRMFSFLAGISLSEYIRCRR
CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LTLAAFELKNSGAKVIDVAIKYGYNSPDSFSRAFQNLHGITPSEARSSSHSLKAYSPMTF
HHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHCCCCCCEEEECCEEE
QLSIQGGHEMNYRIEEKDSFQIIGITKRVPIVFNGVNEEIASMWKSLNPETIQTLKSLSN
EEEECCCCCCCEEECCCCCEEEEEEEECCCEEEECCCHHHHHHHHCCCHHHHHHHHHHCC
MEPTGIISASTNFSEGRMEEKGELDHYIGVATTKDCPEQFKQLEVAASTWAIFEAVGPFP
CCCCEEEEECCCCCCCCCCCCCCCHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
ETLQNVWGRIYSEWFPSSNYELAEGPEILWNEQKDISSPNFKSEIWIPVLKK
HHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]