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The map label for this gene is pocR [H]

Identifier: 118479951

GI number: 118479951

Start: 4613860

End: 4615089

Strand: Direct

Name: pocR [H]

Synonym: BALH_4396

Alternate gene names: 118479951

Gene position: 4613860-4615089 (Clockwise)

Preceding gene: 118479947

Following gene: 118479952

Centisome position: 87.76

GC content: 30.41

Gene sequence:

>1230_bases
ATGAATAATTCTATCGACATACAGCACTTATGCGACCTTGTACATAGCACTTTTCATGTACCTGTTCAATTTTTAGCTAC
TAATAAAAAAATTGTATATGAATCTACTTCTCATACGATTGGTAGTCCGTTTTATTCTTCTAAAGAAGAACATCTTAATG
AAATTTATCAAGAAAATGCTCCTTGTAATTTTCCAATTTTCAAAGGGAATAAATATCTTGAGAATTTCATTAGCATCCAT
ATAAAAAATCATGAACATATAAAAGGAACGATTATAATCGGCCCAACTACCTACCCAAAAGTATCCGATGAAATGGCTAT
TAAACTTATGAAATATTTCAACTGTAATAATAAAACAAAACAAGGAGTAGACTACTACCAATTTCTACCCGAGATAAAAA
AAAGTACGCTAATTGATATAAGTATTTGGTTACATTACGTCATTTTCAATGAAAAATTAGATCGCGATATTGTTTGGAAA
AAAAATAAATTGCTTGAAGATGTTTCTTATAAAATTGTAAATCCTGATTTATATATTTCAAAACGTCGCCGGCATGATCC
ACAAAATTATGACATATCATTGGAACGTAAATTTTTTTCAGCCATTAAAGAAGGCAATAAAGAAAAGGTCATACAATATG
CATATTCCTTCCCTCAAGAAGATGCGGCAATTTCATCTAAAGGAGATCAACTGAGAAACCAAAAAAATAATGGCATTATC
GCCATTACGCTAGCGATTCGATATGCGATAGAAGGTAATCTTCCGTCACATATTGCTTTTTCGCTCGGTACTTTATATAT
ACAAACCATTGAAAAACTAGATAACATGTATTCCGTAAATAGGTTAATTGAAGATGCATTATGCACTTTTGCAGAACGTG
TGAAAGAATATAGTAATCAATCATATTCTAATGCCATTACTACGTGCCTCAATTATATTAACAAGCATATTTACGATGAA
ATATCTTTGAATGATCTTGCTAACCTTTTACATATTTCCCCTACTTATTTATCAAAACTGTTTAAAAAAGAAGTAGGAAT
CCCTTTAATTGAATACATCCAGAGGGAACGAGTAGAAGAAGCTAAAAAATTATTAACATTAACGACTTATCCATTATCAG
ATATTTGTGCCTGGCTTAATTTTAATGATCAAAGTTACTTCACAAGAGTCTTCAAAAAAATTACGAGTATGACTCCTAGA
CAATATAGGGAAAAGCATACTGTTATATAA

Upstream 100 bases:

>100_bases
TTTTATATGAGCAAAGAAATTCAAATAATAAGAAATTTATATTTTGTAGAAACGAATGTAGATTTAAATATATTTCAAAA
CGATTTAAAAGGAGAAAATA

Downstream 100 bases:

>100_bases
AAATGTTTTCTTAATAGGAGGTGAGATAGGTATCATGCTAGCTCACCTTCATCAAATCAATTTATTTAATCTCCTTCTTC
CAAACTCACCTTAATAAAGT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MNNSIDIQHLCDLVHSTFHVPVQFLATNKKIVYESTSHTIGSPFYSSKEEHLNEIYQENAPCNFPIFKGNKYLENFISIH
IKNHEHIKGTIIIGPTTYPKVSDEMAIKLMKYFNCNNKTKQGVDYYQFLPEIKKSTLIDISIWLHYVIFNEKLDRDIVWK
KNKLLEDVSYKIVNPDLYISKRRRHDPQNYDISLERKFFSAIKEGNKEKVIQYAYSFPQEDAAISSKGDQLRNQKNNGII
AITLAIRYAIEGNLPSHIAFSLGTLYIQTIEKLDNMYSVNRLIEDALCTFAERVKEYSNQSYSNAITTCLNYINKHIYDE
ISLNDLANLLHISPTYLSKLFKKEVGIPLIEYIQRERVEEAKKLLTLTTYPLSDICAWLNFNDQSYFTRVFKKITSMTPR
QYREKHTVI

Sequences:

>Translated_409_residues
MNNSIDIQHLCDLVHSTFHVPVQFLATNKKIVYESTSHTIGSPFYSSKEEHLNEIYQENAPCNFPIFKGNKYLENFISIH
IKNHEHIKGTIIIGPTTYPKVSDEMAIKLMKYFNCNNKTKQGVDYYQFLPEIKKSTLIDISIWLHYVIFNEKLDRDIVWK
KNKLLEDVSYKIVNPDLYISKRRRHDPQNYDISLERKFFSAIKEGNKEKVIQYAYSFPQEDAAISSKGDQLRNQKNNGII
AITLAIRYAIEGNLPSHIAFSLGTLYIQTIEKLDNMYSVNRLIEDALCTFAERVKEYSNQSYSNAITTCLNYINKHIYDE
ISLNDLANLLHISPTYLSKLFKKEVGIPLIEYIQRERVEEAKKLLTLTTYPLSDICAWLNFNDQSYFTRVFKKITSMTPR
QYREKHTVI
>Mature_409_residues
MNNSIDIQHLCDLVHSTFHVPVQFLATNKKIVYESTSHTIGSPFYSSKEEHLNEIYQENAPCNFPIFKGNKYLENFISIH
IKNHEHIKGTIIIGPTTYPKVSDEMAIKLMKYFNCNNKTKQGVDYYQFLPEIKKSTLIDISIWLHYVIFNEKLDRDIVWK
KNKLLEDVSYKIVNPDLYISKRRRHDPQNYDISLERKFFSAIKEGNKEKVIQYAYSFPQEDAAISSKGDQLRNQKNNGII
AITLAIRYAIEGNLPSHIAFSLGTLYIQTIEKLDNMYSVNRLIEDALCTFAERVKEYSNQSYSNAITTCLNYINKHIYDE
ISLNDLANLLHISPTYLSKLFKKEVGIPLIEYIQRERVEEAKKLLTLTTYPLSDICAWLNFNDQSYFTRVFKKITSMTPR
QYREKHTVI

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=123, Percent_Identity=31.7073170731707, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1790391, Length=96, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1789993, Length=116, Percent_Identity=31.8965517241379, Blast_Score=62, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 47806; Mature: 47806

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNSIDIQHLCDLVHSTFHVPVQFLATNKKIVYESTSHTIGSPFYSSKEEHLNEIYQENA
CCCCCCHHHHHHHHHHHHHCCHHEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
PCNFPIFKGNKYLENFISIHIKNHEHIKGTIIIGPTTYPKVSDEMAIKLMKYFNCNNKTK
CCCCEEECCCHHHHHHHEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
QGVDYYQFLPEIKKSTLIDISIWLHYVIFNEKLDRDIVWKKNKLLEDVSYKIVNPDLYIS
CCCHHHHHHHHHHHHHEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCCEEE
KRRRHDPQNYDISLERKFFSAIKEGNKEKVIQYAYSFPQEDAAISSKGDQLRNQKNNGII
HHHCCCCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHCCCCHHHHCCCCCCEE
AITLAIRYAIEGNLPSHIAFSLGTLYIQTIEKLDNMYSVNRLIEDALCTFAERVKEYSNQ
EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SYSNAITTCLNYINKHIYDEISLNDLANLLHISPTYLSKLFKKEVGIPLIEYIQRERVEE
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
AKKLLTLTTYPLSDICAWLNFNDQSYFTRVFKKITSMTPRQYREKHTVI
HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCC
>Mature Secondary Structure
MNNSIDIQHLCDLVHSTFHVPVQFLATNKKIVYESTSHTIGSPFYSSKEEHLNEIYQENA
CCCCCCHHHHHHHHHHHHHCCHHEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCC
PCNFPIFKGNKYLENFISIHIKNHEHIKGTIIIGPTTYPKVSDEMAIKLMKYFNCNNKTK
CCCCEEECCCHHHHHHHEEEECCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCC
QGVDYYQFLPEIKKSTLIDISIWLHYVIFNEKLDRDIVWKKNKLLEDVSYKIVNPDLYIS
CCCHHHHHHHHHHHHHEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEECCCCEEE
KRRRHDPQNYDISLERKFFSAIKEGNKEKVIQYAYSFPQEDAAISSKGDQLRNQKNNGII
HHHCCCCCCCCEEHHHHHHHHHHCCCHHHHHHHHHHCCCCCCHHCCCCHHHHCCCCCCEE
AITLAIRYAIEGNLPSHIAFSLGTLYIQTIEKLDNMYSVNRLIEDALCTFAERVKEYSNQ
EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
SYSNAITTCLNYINKHIYDEISLNDLANLLHISPTYLSKLFKKEVGIPLIEYIQRERVEE
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
AKKLLTLTTYPLSDICAWLNFNDQSYFTRVFKKITSMTPRQYREKHTVI
HHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]