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The map label for this gene is ydcM [C]

Identifier: 118479946

GI number: 118479946

Start: 4609147

End: 4610265

Strand: Direct

Name: ydcM [C]

Synonym: BALH_4391

Alternate gene names: 118479946

Gene position: 4609147-4610265 (Clockwise)

Preceding gene: 162382769

Following gene: 118479947

Centisome position: 87.67

GC content: 35.84

Gene sequence:

>1119_bases
ATGGATATGCCAAAGCAGAATAAGGCGTACAAGTTTCGTCTGTATCCAACAGAAGAACAAGCACATCTCATACGAAAAAC
ATTCGGGTGTGTACGTTTTGTGTATAACAAAATGCTGGCTGAACGAATAGAAGTATATGAAAAATATAAACAGGACAAGG
AAAAACTAAAGAAAGAAAAATTCCCTACTCCTGCAAAATATAAGACAGAGTATGAATGGTTGAAAGAAGTTGATTCATTG
GCATTGGCCAACGCGCAATTAAACTTGCAAACTGCGTATAAGAATTTTTTTAGTGGCCAAAGTGATTTTCCTACATTCAA
AAGTAAAAAGAGTAGGAAATCTTATACAACGAATCGAGTAAACGGAAATATTATGTTATTTCATGGTTATATCAAATTAC
CAAAGTTGAAAATGGTGAAACTGAAGCAACATAGAGAGATACCGCCAAAACATATCATCAAATCGTGTACGATTTCGATG
ACACCTACTGGTAAATACTATGTGTCCATCTTGACTGAATATGAAAAAGAGATTGTACAAAAAGAAGTACAAACTGTAGT
TGGATTAGACTTCGCAATGGCTGAATTGTATGTGAGTAGCGAAGATGAGAAAGCCAATTATCCTCGCTTTTATCGTCAGA
TGTTAAAGAAATTAGCGAAGGCACAACGAGTATTAGCAAGACGTGTGAAAGGTTCAGAACGCTGGAATAAACAACGCATT
CGTGTAGCGAAATTGCATGAAAAGATCGCCAATCAACGTAAAAATTTTCTTCATCATAAGTCTAAAGAATTAGCTACGAT
TTTTGACGTTGTAGCAATCGAAGACTTACATATGAAAGGAATGTCACGAGCATTTAGATTTGGTAAGAGTGTAGCGGATA
ATGGTTGGAGGATGTTCACGACATTTTTAGCATATAAGCTACAAGAACAAGGAAAACAGCTTGTAAAAATAGATAAATGG
TTTCCTTCTACAAAGATGTGTAGTAATTGTGGAAATAAAAAAGAAATGCCATTATGTGAACGCACCTATGCGTGTTCGTG
TGGACTCACAATCAGTCGTGACTATAACGCAGCGATCAATATCAAAAAAGAAGCCATCCGCTTATTAGTGTTGGCATAA

Upstream 100 bases:

>100_bases
GAATTTTGGTATAACAATGAAAGCAGATAATAATCTTATAGTGTTCAGGTTGTGTAATCACCGTCATAGCTTATGGAAAA
TGAAGCAGAAAATGAGGTGA

Downstream 100 bases:

>100_bases
ATAGTAACAAAATAACCTTTGGAACAAGGGAGTTAGCTCGGCTGTCCTAGGACAAATTCGTTAGCTATCAAAAGTAGCGA
TGAACCGAGAAGCCCCCACT

Product: IS605 family transposase

Products: NA

Alternate protein names: ORF401 [H]

Number of amino acids: Translated: 372; Mature: 372

Protein sequence:

>372_residues
MDMPKQNKAYKFRLYPTEEQAHLIRKTFGCVRFVYNKMLAERIEVYEKYKQDKEKLKKEKFPTPAKYKTEYEWLKEVDSL
ALANAQLNLQTAYKNFFSGQSDFPTFKSKKSRKSYTTNRVNGNIMLFHGYIKLPKLKMVKLKQHREIPPKHIIKSCTISM
TPTGKYYVSILTEYEKEIVQKEVQTVVGLDFAMAELYVSSEDEKANYPRFYRQMLKKLAKAQRVLARRVKGSERWNKQRI
RVAKLHEKIANQRKNFLHHKSKELATIFDVVAIEDLHMKGMSRAFRFGKSVADNGWRMFTTFLAYKLQEQGKQLVKIDKW
FPSTKMCSNCGNKKEMPLCERTYACSCGLTISRDYNAAINIKKEAIRLLVLA

Sequences:

>Translated_372_residues
MDMPKQNKAYKFRLYPTEEQAHLIRKTFGCVRFVYNKMLAERIEVYEKYKQDKEKLKKEKFPTPAKYKTEYEWLKEVDSL
ALANAQLNLQTAYKNFFSGQSDFPTFKSKKSRKSYTTNRVNGNIMLFHGYIKLPKLKMVKLKQHREIPPKHIIKSCTISM
TPTGKYYVSILTEYEKEIVQKEVQTVVGLDFAMAELYVSSEDEKANYPRFYRQMLKKLAKAQRVLARRVKGSERWNKQRI
RVAKLHEKIANQRKNFLHHKSKELATIFDVVAIEDLHMKGMSRAFRFGKSVADNGWRMFTTFLAYKLQEQGKQLVKIDKW
FPSTKMCSNCGNKKEMPLCERTYACSCGLTISRDYNAAINIKKEAIRLLVLA
>Mature_372_residues
MDMPKQNKAYKFRLYPTEEQAHLIRKTFGCVRFVYNKMLAERIEVYEKYKQDKEKLKKEKFPTPAKYKTEYEWLKEVDSL
ALANAQLNLQTAYKNFFSGQSDFPTFKSKKSRKSYTTNRVNGNIMLFHGYIKLPKLKMVKLKQHREIPPKHIIKSCTISM
TPTGKYYVSILTEYEKEIVQKEVQTVVGLDFAMAELYVSSEDEKANYPRFYRQMLKKLAKAQRVLARRVKGSERWNKQRI
RVAKLHEKIANQRKNFLHHKSKELATIFDVVAIEDLHMKGMSRAFRFGKSVADNGWRMFTTFLAYKLQEQGKQLVKIDKW
FPSTKMCSNCGNKKEMPLCERTYACSCGLTISRDYNAAINIKKEAIRLLVLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=357, Percent_Identity=30.812324929972, Blast_Score=151, Evalue=5e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 43723; Mature: 43723

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDMPKQNKAYKFRLYPTEEQAHLIRKTFGCVRFVYNKMLAERIEVYEKYKQDKEKLKKEK
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FPTPAKYKTEYEWLKEVDSLALANAQLNLQTAYKNFFSGQSDFPTFKSKKSRKSYTTNRV
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHCHHHHHCCCCCCC
NGNIMLFHGYIKLPKLKMVKLKQHREIPPKHIIKSCTISMTPTGKYYVSILTEYEKEIVQ
CCCEEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHH
KEVQTVVGLDFAMAELYVSSEDEKANYPRFYRQMLKKLAKAQRVLARRVKGSERWNKQRI
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
RVAKLHEKIANQRKNFLHHKSKELATIFDVVAIEDLHMKGMSRAFRFGKSVADNGWRMFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHH
TFLAYKLQEQGKQLVKIDKWFPSTKMCSNCGNKKEMPLCERTYACSCGLTISRDYNAAIN
HHHHHHHHHHCHHHEEHHHCCCCHHHHHCCCCCCCCCHHHHHHHEECCCEEECCCCCEEE
IKKEAIRLLVLA
EHHHHHEEHCCC
>Mature Secondary Structure
MDMPKQNKAYKFRLYPTEEQAHLIRKTFGCVRFVYNKMLAERIEVYEKYKQDKEKLKKEK
CCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
FPTPAKYKTEYEWLKEVDSLALANAQLNLQTAYKNFFSGQSDFPTFKSKKSRKSYTTNRV
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCHHCHHHHHCCCCCCC
NGNIMLFHGYIKLPKLKMVKLKQHREIPPKHIIKSCTISMTPTGKYYVSILTEYEKEIVQ
CCCEEEEEEEEECCCHHHHHHHHHCCCCHHHHHHHCEEEECCCCHHHHHHHHHHHHHHHH
KEVQTVVGLDFAMAELYVSSEDEKANYPRFYRQMLKKLAKAQRVLARRVKGSERWNKQRI
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
RVAKLHEKIANQRKNFLHHKSKELATIFDVVAIEDLHMKGMSRAFRFGKSVADNGWRMFT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCHHHHH
TFLAYKLQEQGKQLVKIDKWFPSTKMCSNCGNKKEMPLCERTYACSCGLTISRDYNAAIN
HHHHHHHHHHCHHHEEHHHCCCCHHHHHCCCCCCCCCHHHHHHHEECCCEEECCCCCEEE
IKKEAIRLLVLA
EHHHHHEEHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7665509 [H]