Click here to switch to the map view.

The map label for this gene is ytlD [H]

Identifier: 118479910

GI number: 118479910

Start: 4575361

End: 4576215

Strand: Direct

Name: ytlD [H]

Synonym: BALH_4354

Alternate gene names: 118479910

Gene position: 4575361-4576215 (Clockwise)

Preceding gene: 118479909

Following gene: 118479913

Centisome position: 87.03

GC content: 41.87

Gene sequence:

>855_bases
ATGACTTCCCATCCCTCTTCCAAAATATATGGAAGGAGCTGGAGCGCCTTGGATAATATAAAGCAACTACATGAACAGTT
TCGGAAAAAAGAACGCAGGCGCGCATGGTTAGCACGCTCTTTGCAGCTTTTACTGCTCATTCTTTTCTTTGCACTATGGG
AAATAGCTAGCAAAAAAGAATGGATTGATCCTTTACTCTTTAGCTCTCCTTCAAGCATTTGGGATCTCTTCCTTAATAAA
TGGCTTGACGGTTCCCTTTGGGTCCACATATGGACGACATTACTTGAAACGGGAGTAGGCTTCATTCTTGGAACAGTGCT
CGGCGCTATTATCGCTACTTTCCTTTGGTGGATACCGCTTCTCGCCCGCGTACTTGATCCATATCTCGTCGTCCTAAACG
CCATGCCAAAAGTGGCACTTGGGCCGATTATCATTGTAATCTTCGGTCCAAATATTTCTTCGTCAATTGCAATGGGAGTA
ATCATTTCCATCATCATTACCATTCTCGTTATTTACAGCGCATTCCAAGAAGTCGATTCTAACTATATAAAAGTGATGGA
CACATTTGGCGCAAATAAATGGCAATGTTATAAGCAAGTCGTTCTCCCTGCATCTTTCCCAGCCATTATTTCAACGTTAA
AAGTGAACGTTGGATTAGCTTGGGTCGGTGTTATATTTGGCGAACTTCTCGTCTCTAAACAAGGTCTTGGCTACTTAATT
AGCTACGGGTTCCAAGTATTTAATTTCACTCTCGTCTTACTGAGCGTACTACTCACCTGTGTCCTCGCAACACTTATGTA
TGTGTTTGTTGAGGCACTTGAAAAACTTCTAATTGGTAAACGAAAAAAAAGCTGA

Upstream 100 bases:

>100_bases
CGTATTTATTTACTACAAGCGAATCCTGGGAAAATTGCAAAAACATTTATCGTCCCAGAAAGCATTCGTTCCTTATCACC
GTTAGAATCACGCCACCATC

Downstream 100 bases:

>100_bases
CTTAGGGCGATAGACTATAGTCAGCTTCTTTCTTTTACTTTTTATCACACATCTTTGTTTCATTTTTAACGTTTCCATCC
GCAACCGTAACTGTATGGAA

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 284; Mature: 283

Protein sequence:

>284_residues
MTSHPSSKIYGRSWSALDNIKQLHEQFRKKERRRAWLARSLQLLLLILFFALWEIASKKEWIDPLLFSSPSSIWDLFLNK
WLDGSLWVHIWTTLLETGVGFILGTVLGAIIATFLWWIPLLARVLDPYLVVLNAMPKVALGPIIIVIFGPNISSSIAMGV
IISIIITILVIYSAFQEVDSNYIKVMDTFGANKWQCYKQVVLPASFPAIISTLKVNVGLAWVGVIFGELLVSKQGLGYLI
SYGFQVFNFTLVLLSVLLTCVLATLMYVFVEALEKLLIGKRKKS

Sequences:

>Translated_284_residues
MTSHPSSKIYGRSWSALDNIKQLHEQFRKKERRRAWLARSLQLLLLILFFALWEIASKKEWIDPLLFSSPSSIWDLFLNK
WLDGSLWVHIWTTLLETGVGFILGTVLGAIIATFLWWIPLLARVLDPYLVVLNAMPKVALGPIIIVIFGPNISSSIAMGV
IISIIITILVIYSAFQEVDSNYIKVMDTFGANKWQCYKQVVLPASFPAIISTLKVNVGLAWVGVIFGELLVSKQGLGYLI
SYGFQVFNFTLVLLSVLLTCVLATLMYVFVEALEKLLIGKRKKS
>Mature_283_residues
TSHPSSKIYGRSWSALDNIKQLHEQFRKKERRRAWLARSLQLLLLILFFALWEIASKKEWIDPLLFSSPSSIWDLFLNKW
LDGSLWVHIWTTLLETGVGFILGTVLGAIIATFLWWIPLLARVLDPYLVVLNAMPKVALGPIIIVIFGPNISSSIAMGVI
ISIIITILVIYSAFQEVDSNYIKVMDTFGANKWQCYKQVVLPASFPAIISTLKVNVGLAWVGVIFGELLVSKQGLGYLIS
YGFQVFNFTLVLLSVLLTCVLATLMYVFVEALEKLLIGKRKKS

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0600

COG function: function code P; ABC-type nitrate/sulfonate/bicarbonate transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87081802, Length=246, Percent_Identity=25.609756097561, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786564, Length=266, Percent_Identity=22.1804511278195, Blast_Score=75, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32010; Mature: 31879

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSHPSSKIYGRSWSALDNIKQLHEQFRKKERRRAWLARSLQLLLLILFFALWEIASKKE
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WIDPLLFSSPSSIWDLFLNKWLDGSLWVHIWTTLLETGVGFILGTVLGAIIATFLWWIPL
HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARVLDPYLVVLNAMPKVALGPIIIVIFGPNISSSIAMGVIISIIITILVIYSAFQEVDS
HHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
NYIKVMDTFGANKWQCYKQVVLPASFPAIISTLKVNVGLAWVGVIFGELLVSKQGLGYLI
HHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SYGFQVFNFTLVLLSVLLTCVLATLMYVFVEALEKLLIGKRKKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TSHPSSKIYGRSWSALDNIKQLHEQFRKKERRRAWLARSLQLLLLILFFALWEIASKKE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WIDPLLFSSPSSIWDLFLNKWLDGSLWVHIWTTLLETGVGFILGTVLGAIIATFLWWIPL
HHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LARVLDPYLVVLNAMPKVALGPIIIVIFGPNISSSIAMGVIISIIITILVIYSAFQEVDS
HHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
NYIKVMDTFGANKWQCYKQVVLPASFPAIISTLKVNVGLAWVGVIFGELLVSKQGLGYLI
HHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SYGFQVFNFTLVLLSVLLTCVLATLMYVFVEALEKLLIGKRKKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]