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The map label for this gene is sigW [H]

Identifier: 118479803

GI number: 118479803

Start: 4464176

End: 4464721

Strand: Reverse

Name: sigW [H]

Synonym: BALH_4240

Alternate gene names: 118479803

Gene position: 4464721-4464176 (Counterclockwise)

Preceding gene: 118479805

Following gene: 118479802

Centisome position: 84.93

GC content: 36.63

Gene sequence:

>546_bases
ATGGCGCAGATTGGGATTGAGGAGGAGCTCATGCTTGCGTATCAAAGTGGAGATAAGCAGGCTGGGGAAAAACTATATGT
TTTAATCAAACCAGCGCTATACACATTTTTATATCGATTTAATCGAGATGAACAATTAAGTATCGACCTTGTACAAGATA
CGTTTTTGACGTTAGAGCGTAAGAAACATATGTATGAACTTGAAAAAGGCAAAATAAAAACGTATTTATTTCAAATCGGT
TATCGTCTTATGATTAATAAATTAAATAGGAGAAAAAAGTGGCGTACGCTTTTGCCGTTTTTAGTGCCGATTCCGGAAAA
AGAATTTTCTCACGAAGATCGGCTCACAGTAAGGGACGCGATTTTGAAAGTTCCTGAAGAGCAAAGAGCGGTCCTAATCC
TTTCTTATTATCATGATATGCAGCAAAAAGAGATTGCAGAAATATTAAACATTCCGATTGGAACAGTGAAATCGAGACTT
CATAACGGGATAAAGAAATTGAAACAATTGCTGGAGGTGGATGAAATTGAGCGAAAATCCCTTTAA

Upstream 100 bases:

>100_bases
TTTTTTACGAATCAATCACAAGTATGGATTATTGTCGCAAGTTGCTATTTAATTTCCCGCGTTTCGTTAACGTTAAAAGG
AATAAAGGAGATCAAAAATC

Downstream 100 bases:

>100_bases
GAGTGAATATAAGTTAAAGCAACATTTAGATAGTGATCATGTAGAAATACCAGACTTTCCAAAAACGGTAAGTCGCTTCG
ATCGATTAATCGGATTTCTT

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-W factor [H]

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MAQIGIEEELMLAYQSGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLERKKHMYELEKGKIKTYLFQIG
YRLMINKLNRRKKWRTLLPFLVPIPEKEFSHEDRLTVRDAILKVPEEQRAVLILSYYHDMQQKEIAEILNIPIGTVKSRL
HNGIKKLKQLLEVDEIERKSL

Sequences:

>Translated_181_residues
MAQIGIEEELMLAYQSGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLERKKHMYELEKGKIKTYLFQIG
YRLMINKLNRRKKWRTLLPFLVPIPEKEFSHEDRLTVRDAILKVPEEQRAVLILSYYHDMQQKEIAEILNIPIGTVKSRL
HNGIKKLKQLLEVDEIERKSL
>Mature_180_residues
AQIGIEEELMLAYQSGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLERKKHMYELEKGKIKTYLFQIGY
RLMINKLNRRKKWRTLLPFLVPIPEKEFSHEDRLTVRDAILKVPEEQRAVLILSYYHDMQQKEIAEILNIPIGTVKSRLH
NGIKKLKQLLEVDEIERKSL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. Sigma-W controls genes involved in transport processes and detoxification [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014294
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 21536; Mature: 21404

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQIGIEEELMLAYQSGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLER
CCCCCCCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHH
KKHMYELEKGKIKTYLFQIGYRLMINKLNRRKKWRTLLPFLVPIPEKEFSHEDRLTVRDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHH
ILKVPEEQRAVLILSYYHDMQQKEIAEILNIPIGTVKSRLHNGIKKLKQLLEVDEIERKS
HHHCCCCHHHEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
L
C
>Mature Secondary Structure 
AQIGIEEELMLAYQSGDKQAGEKLYVLIKPALYTFLYRFNRDEQLSIDLVQDTFLTLER
CCCCCCHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHH
KKHMYELEKGKIKTYLFQIGYRLMINKLNRRKKWRTLLPFLVPIPEKEFSHEDRLTVRDA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCHHHHHH
ILKVPEEQRAVLILSYYHDMQQKEIAEILNIPIGTVKSRLHNGIKKLKQLLEVDEIERKS
HHHCCCCHHHEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377; 12207695 [H]