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The map label for this gene is sigM [H]

Identifier: 118479762

GI number: 118479762

Start: 4425081

End: 4425590

Strand: Reverse

Name: sigM [H]

Synonym: BALH_4199

Alternate gene names: 118479762

Gene position: 4425590-4425081 (Counterclockwise)

Preceding gene: 118479763

Following gene: 118479761

Centisome position: 84.18

GC content: 35.29

Gene sequence:

>510_bases
ATGAGCCATGATACGTTTGAAACATTATTAATAGAGAAGTCAAAAGCTGTGTTTGGATACTTAATTAAGATTGGAGCAGA
TAGAAAAGAAGCAGAGGATATTGTGCAAGATACGTTGTACAAAGCTTTATTACTTATGGAGGAAATACCGTTAGAGCATT
TAACACCGTGGCTCTTTAGAGTGGCGATAAATCAGCACCGAGATTTACACCGGAAAGAAAAAAGACTAAATCCCATTGCG
ATTGAATCTGTCGTTCTTATTGGCCAAAAGTCATTAGATGAAGTGCTTTTAACAAGTGAACTACAAGGCGAGGTACAAGA
AATATTGGAGAAGATGACGGAGGATTATCGTCATATTTTACTGTTGAAATATGAATATGAACGATCCTATAAGGAAATTG
CCATTTTATTAAGTATGAAAGAAGATACAGTAAAAACAAGTTTGTACCGTGCAAGAAATCAATTTAAAAAATTGTATAGG
AGGAGAAGCGATGAGTCGGAAGGACTTTGA

Upstream 100 bases:

>100_bases
AGCACATCAAAATAGATGTGCTTTTTTATTTTGAAAAATTTAAGAAAAGCTGTATACATTTTACGCTCTCAAACGTTGAA
TATATAGAAAGGAGAGCAGG

Downstream 100 bases:

>100_bases
TTTGAATATGGATGATAAGCAGATGAAGACTTTGATGAAGAGAGCGAAGAGGAAGCAGTTTTTTCGAAATTTTGTCATCT
CAATCTTTGCATCTACTTTA

Product: ECF subfamily RNA polymerase sigma factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 168

Protein sequence:

>169_residues
MSHDTFETLLIEKSKAVFGYLIKIGADRKEAEDIVQDTLYKALLLMEEIPLEHLTPWLFRVAINQHRDLHRKEKRLNPIA
IESVVLIGQKSLDEVLLTSELQGEVQEILEKMTEDYRHILLLKYEYERSYKEIAILLSMKEDTVKTSLYRARNQFKKLYR
RRSDESEGL

Sequences:

>Translated_169_residues
MSHDTFETLLIEKSKAVFGYLIKIGADRKEAEDIVQDTLYKALLLMEEIPLEHLTPWLFRVAINQHRDLHRKEKRLNPIA
IESVVLIGQKSLDEVLLTSELQGEVQEILEKMTEDYRHILLLKYEYERSYKEIAILLSMKEDTVKTSLYRARNQFKKLYR
RRSDESEGL
>Mature_168_residues
SHDTFETLLIEKSKAVFGYLIKIGADRKEAEDIVQDTLYKALLLMEEIPLEHLTPWLFRVAINQHRDLHRKEKRLNPIAI
ESVVLIGQKSLDEVLLTSELQGEVQEILEKMTEDYRHILLLKYEYERSYKEIAILLSMKEDTVKTSLYRARNQFKKLYRR
RSDESEGL

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor may be involved in the maintenance of membrane and cell wall integrity in response to salt, acid and e

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014296
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19995; Mature: 19864

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHDTFETLLIEKSKAVFGYLIKIGADRKEAEDIVQDTLYKALLLMEEIPLEHLTPWLFR
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VAINQHRDLHRKEKRLNPIAIESVVLIGQKSLDEVLLTSELQGEVQEILEKMTEDYRHIL
HHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLKYEYERSYKEIAILLSMKEDTVKTSLYRARNQFKKLYRRRSDESEGL
HEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SHDTFETLLIEKSKAVFGYLIKIGADRKEAEDIVQDTLYKALLLMEEIPLEHLTPWLFR
CCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
VAINQHRDLHRKEKRLNPIAIESVVLIGQKSLDEVLLTSELQGEVQEILEKMTEDYRHIL
HHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLKYEYERSYKEIAILLSMKEDTVKTSLYRARNQFKKLYRRRSDESEGL
HEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377; 12775685; 10216858 [H]