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The map label for this gene is radC [C]

Identifier: 118479620

GI number: 118479620

Start: 4265842

End: 4266468

Strand: Reverse

Name: radC [C]

Synonym: BALH_4047

Alternate gene names: 118479620

Gene position: 4266468-4265842 (Counterclockwise)

Preceding gene: 118479621

Following gene: 118479619

Centisome position: 81.16

GC content: 40.51

Gene sequence:

>627_bases
ATGAACGGTATTCGTGATGTTGTCAAAGAAGAACAGCCACGGGAGCGTTTATTGTTAGAGGGAGCTGGAAGTTTATCAAA
TCGGGAGCTTCTTGCAGTGTTACTGAGAACAGGTTCTAAGGAAGAATCAGTTTTGAAGTTATCAGATAAAATTTTACATC
ACTTTGATGGTTTACGTATGCTGAAAGATGCAACGTTAGAAGAGCTTGTCAGTATACATGGTGTCGGGATTGCAAAGGCA
ACTCAGCTTATAGCCGCTTTTGAACTCGGTAGAAGAATGGTGCGTTTAGAATATCAAAATAGATACAGCATTCGAAGCCC
GGAAGATTGCGCCACATACATGATGGAAGAAATGCGCTTCTTGCAGCAGGAGCATTTTGTATGTTTATATTTGAACACAA
AGAATCAAGTCATACATAGGCAAACGATTTTCATTGGAAGTTTAAACTCTTCAATTGTACATCCAAGGGAAGTTTTTAAA
GAAGCGTTTCGCCGTGCAGCAGCCTCTATCATATGTCTTCATAACCATCCCTCAGGAGACCCCGCGCCGAGCCGAGAAGA
TATTGAAGTAACAAAACGCTTAGTAGAATGCGGTCGAATTATCGGAATTGAAATTCTCTTATCTTAA

Upstream 100 bases:

>100_bases
TCACGTCTTGTTCGGGAATTAAAACAATTTAATATTGATGTAACCCATGCGTAAAATTGCATGGGATTTTCTTTGAGAGA
ACAAATAAAGGGGTGGAGAA

Downstream 100 bases:

>100_bases
TAAGAAGTACAGGGCAAAATTACATTAGAGTTGAAAATACTTATGTATCTAATTTTTGCCCTATTCTACATGAATGTGAG
ACATAGAAAAGTTATCTACG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELVSIHGVGIAKA
TQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFK
EAFRRAAASIICLHNHPSGDPAPSREDIEVTKRLVECGRIIGIEILLS

Sequences:

>Translated_208_residues
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELVSIHGVGIAKA
TQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFK
EAFRRAAASIICLHNHPSGDPAPSREDIEVTKRLVECGRIIGIEILLS
>Mature_208_residues
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRMLKDATLEELVSIHGVGIAKA
TQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRFLQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFK
EAFRRAAASIICLHNHPSGDPAPSREDIEVTKRLVECGRIIGIEILLS

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=194, Percent_Identity=34.020618556701, Blast_Score=131, Evalue=3e-32,
Organism=Escherichia coli, GI1788997, Length=103, Percent_Identity=41.747572815534, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI1788312, Length=93, Percent_Identity=41.9354838709677, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI2367100, Length=93, Percent_Identity=41.9354838709677, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 23692; Mature: 23692

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRM
CCCHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LKDATLEELVSIHGVGIAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEHHCCCCCCCCCHHHHHHHHHHHHH
LQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFKEAFRRAAASIICLHNHPSGD
HHHCCEEEEEECCCCCEEEHHEEEEECCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCC
PAPSREDIEVTKRLVECGRIIGIEILLS
CCCCCHHHHHHHHHHHHHHHHHEEEEEC
>Mature Secondary Structure
MNGIRDVVKEEQPRERLLLEGAGSLSNRELLAVLLRTGSKEESVLKLSDKILHHFDGLRM
CCCHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LKDATLEELVSIHGVGIAKATQLIAAFELGRRMVRLEYQNRYSIRSPEDCATYMMEEMRF
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEHHCCCCCCCCCHHHHHHHHHHHHH
LQQEHFVCLYLNTKNQVIHRQTIFIGSLNSSIVHPREVFKEAFRRAAASIICLHNHPSGD
HHHCCEEEEEECCCCCEEEHHEEEEECCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCC
PAPSREDIEVTKRLVECGRIIGIEILLS
CCCCCHHHHHHHHHHHHHHHHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA