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The map label for this gene is yojE [H]

Identifier: 118478806

GI number: 118478806

Start: 3390910

End: 3391896

Strand: Reverse

Name: yojE [H]

Synonym: BALH_3200

Alternate gene names: 118478806

Gene position: 3391896-3390910 (Counterclockwise)

Preceding gene: 118478807

Following gene: 118478805

Centisome position: 64.52

GC content: 36.37

Gene sequence:

>987_bases
GTGGGACCGTATAATGGAGAAAAACGAGAAGAGGAGAAAAGGAAGATGGGGAGTCAATCAGCACAGCAGAAAAAAGGGAT
CATATATGCGGCTGGTGCGTATACGATGTGGGGAATCCTACCAATCTATTGGAAATGGGTTGAGGAAGTTCCAGCAGATG
AAATATTAGCACACCGCATCGTTTGGGCGTTCGTGTTTATGTTAATCGTATTAGGTGTTACGAAGAGATTTCGTCAGTTT
ATTGGGGAGTTCGTGAATCTTTTTAAACGACCTAAATTATTAATGTCATTAACAATAGCTTCAGTCTTGATTAGCGGAAA
CTGGTTTGTCTACATATGGGCCGTTAATCATAATCATGTCATTGAAGCAAGTCTTGGCTATTATATTAATCCGCTTATTA
GTATTTTACTTGGTACAGTCGTTTTAAAGGAAAAGTTAAACTTTTGGCAATACGTTGCAGTTGGTTTAGCTGGAGTAGGA
GTTATCATTTTAACAGTACGTTTCGGGGCTATTCCATGGGTTTCTTTATCACTTGCTCTTTCATTTGGATTATATGGATT
AACGAAAAAATTGTTAAACTATGATGCGACAATTGGACTTACGATGGAAACGATGTTAGTAACGCCGTTTGCGATTATTT
ATTTAGTAATGACAGGAGTACATGGTTTCGGCTCATTTGGCTCTATCTCAATGTCATCGACATTACTATTAATAGGAGCG
GGCATTGTTACAGCTCTACCACTTTTTTATTTTGCAAAAGGAGCACAACTTATTCCGCTTTATATGGTAGGTTTTTTACA
ATATATTGCACCAACGATTAGTTTAATTTTAGGTGTGTTCGTATTTGGTGAACATTTCACATCTACTCATATGATTGCAT
TTTTCTGTATATGGGTTGCATTATTTGTATTCTCGGTAGCGAAAACAAAGTTCTTAGTGCAGAAACAACCGAAATTTATA
AAAAATAAATCAGCAAAAGTATCATAA

Upstream 100 bases:

>100_bases
TTTCGGTATACCGTTACTTGTCGTTATCACAATATGTTTACTTTTTGCTGTATGAGAAATGTCGAAAGAATTGCAGATTG
ATTATTGGTAAAGTGAGCAC

Downstream 100 bases:

>100_bases
TGCGTAGTATTTTCTACGCATTTTTCTTTATACTGATACTATAAAGGATTTCCATTATAGCTAGTAGGGAGCTGAGAACG
TGGAAACAATTTTACATAAC

Product: chloramphenicol-sensitive RarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MGPYNGEKREEEKRKMGSQSAQQKKGIIYAAGAYTMWGILPIYWKWVEEVPADEILAHRIVWAFVFMLIVLGVTKRFRQF
IGEFVNLFKRPKLLMSLTIASVLISGNWFVYIWAVNHNHVIEASLGYYINPLISILLGTVVLKEKLNFWQYVAVGLAGVG
VIILTVRFGAIPWVSLSLALSFGLYGLTKKLLNYDATIGLTMETMLVTPFAIIYLVMTGVHGFGSFGSISMSSTLLLIGA
GIVTALPLFYFAKGAQLIPLYMVGFLQYIAPTISLILGVFVFGEHFTSTHMIAFFCIWVALFVFSVAKTKFLVQKQPKFI
KNKSAKVS

Sequences:

>Translated_328_residues
MGPYNGEKREEEKRKMGSQSAQQKKGIIYAAGAYTMWGILPIYWKWVEEVPADEILAHRIVWAFVFMLIVLGVTKRFRQF
IGEFVNLFKRPKLLMSLTIASVLISGNWFVYIWAVNHNHVIEASLGYYINPLISILLGTVVLKEKLNFWQYVAVGLAGVG
VIILTVRFGAIPWVSLSLALSFGLYGLTKKLLNYDATIGLTMETMLVTPFAIIYLVMTGVHGFGSFGSISMSSTLLLIGA
GIVTALPLFYFAKGAQLIPLYMVGFLQYIAPTISLILGVFVFGEHFTSTHMIAFFCIWVALFVFSVAKTKFLVQKQPKFI
KNKSAKVS
>Mature_327_residues
GPYNGEKREEEKRKMGSQSAQQKKGIIYAAGAYTMWGILPIYWKWVEEVPADEILAHRIVWAFVFMLIVLGVTKRFRQFI
GEFVNLFKRPKLLMSLTIASVLISGNWFVYIWAVNHNHVIEASLGYYINPLISILLGTVVLKEKLNFWQYVAVGLAGVGV
IILTVRFGAIPWVSLSLALSFGLYGLTKKLLNYDATIGLTMETMLVTPFAIIYLVMTGVHGFGSFGSISMSSTLLLIGAG
IVTALPLFYFAKGAQLIPLYMVGFLQYIAPTISLILGVFVFGEHFTSTHMIAFFCIWVALFVFSVAKTKFLVQKQPKFIK
NKSAKVS

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 DUF6 domains [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=286, Percent_Identity=41.6083916083916, Blast_Score=229, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 36669; Mature: 36538

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPYNGEKREEEKRKMGSQSAQQKKGIIYAAGAYTMWGILPIYWKWVEEVPADEILAHRI
CCCCCCCHHHHHHHHHCCHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHH
VWAFVFMLIVLGVTKRFRQFIGEFVNLFKRPKLLMSLTIASVLISGNWFVYIWAVNHNHV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCEEEEEEEECCCEE
IEASLGYYINPLISILLGTVVLKEKLNFWQYVAVGLAGVGVIILTVRFGAIPWVSLSLAL
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
SFGLYGLTKKLLNYDATIGLTMETMLVTPFAIIYLVMTGVHGFGSFGSISMSSTLLLIGA
HHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH
GIVTALPLFYFAKGAQLIPLYMVGFLQYIAPTISLILGVFVFGEHFTSTHMIAFFCIWVA
HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFVFSVAKTKFLVQKQPKFIKNKSAKVS
HHHHHHHHHHHHHHCCCHHHCCCCCCCC
>Mature Secondary Structure 
GPYNGEKREEEKRKMGSQSAQQKKGIIYAAGAYTMWGILPIYWKWVEEVPADEILAHRI
CCCCCCHHHHHHHHHCCHHHHHHCCEEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHH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HHHHHHHHHHHHHHCCCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]