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The map label for this gene is ywqM [H]

Identifier: 118478744

GI number: 118478744

Start: 3314537

End: 3315430

Strand: Reverse

Name: ywqM [H]

Synonym: BALH_3136

Alternate gene names: 118478744

Gene position: 3315430-3314537 (Counterclockwise)

Preceding gene: 118478746

Following gene: 118478742

Centisome position: 63.07

GC content: 35.68

Gene sequence:

>894_bases
ATGGAGATAAAACAATTAATTACCTTTAAAATAGCCGCGGATACTTTGAACTTTACACAAACTGCGAAGAAATTAAACTT
TGCTCAATCGAGCGTAACGGCGCAAATTAAAACGTTAGAAGCTGAGCTAGGTACGCCGTTATTTGAAAGATTAGGAAAAC
GTCTTTTCTTAACTGAAGCAGGGAGGAAGTTTCAATTATATGCTGATAAGATGATTGGACTTAGTAACGAAGCGAAAATG
GTTGTGAAAGATGATGAAGAAATAGCTGGTACGTTAACGATTGGTGCACAAGAAAGTCAGTGTACATATAGGCTTCCATC
TATATTAAAGAGATTTAAAGCACAATTTCCTCAAATAAAACTTATATTTAAACCAGCACATTCTAATAAAGATGCGAAGG
AACAATTAATGGAGGGAAAAGTTGATCTTGCATTTATTTTGGATGAATGTAAAACAGAAGATGCTTTACATGTGGAGCCG
CTTATGAAAGAAGAATTAAAAGTAGTAGCTGCTCCAGGGCATCATTTACTCCAGCAAACTTCCATTTCTATAAAAGATTT
AGAGAAGGAAACACTTTTATTAACAGAACTAGGGTGCTCATATCGGACTTTATTTGAGGGGTTATTTCGCGCAAAAGACA
TATATCCAGCAAATAAGATTGAGTTTGTTAGTGTCGAGGCAATTAAACAATGCGTCATTGCAGATTTAGGTGTTGCTGTG
TTACCTGCTATAGTAGTAGAAAAAGATATGCGAGAAGGGACGATAAAGGAGTTAGTTTTAAAAGAAACAATTCCTCCGAT
TTATACGCAAATCGCTTGGCATAAAGACAAATGGATGACAGTGCCACTGCAGCAATTTATCGATGTAACAAGAGAGTTTT
TTACAACGGATTAA

Upstream 100 bases:

>100_bases
TTTGTCGATGCTCTTTATCATACAATATAAATATCAATAGACAAAGAGGATTATTTTGATAAGATCAATCGAAAATTTCG
ATTGAAAAGAGGGATGATAA

Downstream 100 bases:

>100_bases
GTGGAGAAATATTTGTTTTCTATAAAAGAAAAAATAGCAATTTTGTATAAAGAACCGATGCTTGCATGTAACAAGTATCG
GTTCTTTATAGTATATTTTT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MEIKQLITFKIAADTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEAGRKFQLYADKMIGLSNEAKM
VVKDDEEIAGTLTIGAQESQCTYRLPSILKRFKAQFPQIKLIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDALHVEP
LMKEELKVVAAPGHHLLQQTSISIKDLEKETLLLTELGCSYRTLFEGLFRAKDIYPANKIEFVSVEAIKQCVIADLGVAV
LPAIVVEKDMREGTIKELVLKETIPPIYTQIAWHKDKWMTVPLQQFIDVTREFFTTD

Sequences:

>Translated_297_residues
MEIKQLITFKIAADTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEAGRKFQLYADKMIGLSNEAKM
VVKDDEEIAGTLTIGAQESQCTYRLPSILKRFKAQFPQIKLIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDALHVEP
LMKEELKVVAAPGHHLLQQTSISIKDLEKETLLLTELGCSYRTLFEGLFRAKDIYPANKIEFVSVEAIKQCVIADLGVAV
LPAIVVEKDMREGTIKELVLKETIPPIYTQIAWHKDKWMTVPLQQFIDVTREFFTTD
>Mature_297_residues
MEIKQLITFKIAADTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEAGRKFQLYADKMIGLSNEAKM
VVKDDEEIAGTLTIGAQESQCTYRLPSILKRFKAQFPQIKLIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDALHVEP
LMKEELKVVAAPGHHLLQQTSISIKDLEKETLLLTELGCSYRTLFEGLFRAKDIYPANKIEFVSVEAIKQCVIADLGVAV
LPAIVVEKDMREGTIKELVLKETIPPIYTQIAWHKDKWMTVPLQQFIDVTREFFTTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=299, Percent_Identity=28.0936454849498, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787806, Length=289, Percent_Identity=30.1038062283737, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=27.5862068965517, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1790262, Length=267, Percent_Identity=27.3408239700375, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI157672245, Length=293, Percent_Identity=23.8907849829352, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787530, Length=256, Percent_Identity=26.171875, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1790208, Length=256, Percent_Identity=27.734375, Blast_Score=84, Evalue=9e-18,
Organism=Escherichia coli, GI1790399, Length=260, Percent_Identity=26.9230769230769, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=25.4098360655738, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=26, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1788887, Length=298, Percent_Identity=25.8389261744966, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=295, Percent_Identity=21.0169491525424, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1786401, Length=303, Percent_Identity=24.7524752475248, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788706, Length=186, Percent_Identity=27.9569892473118, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788297, Length=250, Percent_Identity=24.4, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI145693105, Length=249, Percent_Identity=23.6947791164659, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788626, Length=253, Percent_Identity=26.0869565217391, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081904, Length=261, Percent_Identity=25.2873563218391, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33637; Mature: 33637

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKQLITFKIAADTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEA
CCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECC
GRKFQLYADKMIGLSNEAKMVVKDDEEIAGTLTIGAQESQCTYRLPSILKRFKAQFPQIK
CCEEEEEHHHHHCCCCCCEEEEECCCHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
LIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDALHVEPLMKEELKVVAAPGHHLLQQT
EEEECCCCCCHHHHHHHCCCCHHEEHHHHHCCCCCEECCHHHHHHHEEEECCCHHHHHHH
SISIKDLEKETLLLTELGCSYRTLFEGLFRAKDIYPANKIEFVSVEAIKQCVIADLGVAV
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHH
LPAIVVEKDMREGTIKELVLKETIPPIYTQIAWHKDKWMTVPLQQFIDVTREFFTTD
HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHEECCCCEEECCHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEIKQLITFKIAADTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEA
CCHHHHEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECC
GRKFQLYADKMIGLSNEAKMVVKDDEEIAGTLTIGAQESQCTYRLPSILKRFKAQFPQIK
CCEEEEEHHHHHCCCCCCEEEEECCCHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
LIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDALHVEPLMKEELKVVAAPGHHLLQQT
EEEECCCCCCHHHHHHHCCCCHHEEHHHHHCCCCCEECCHHHHHHHEEEECCCHHHHHHH
SISIKDLEKETLLLTELGCSYRTLFEGLFRAKDIYPANKIEFVSVEAIKQCVIADLGVAV
CCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHH
LPAIVVEKDMREGTIKELVLKETIPPIYTQIAWHKDKWMTVPLQQFIDVTREFFTTD
HHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHEECCCCEEECCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]