Click here to switch to the map view.

The map label for this gene is trrA [H]

Identifier: 118478439

GI number: 118478439

Start: 2971873

End: 2973102

Strand: Reverse

Name: trrA [H]

Synonym: BALH_2808

Alternate gene names: 118478439

Gene position: 2973102-2971873 (Counterclockwise)

Preceding gene: 118478441

Following gene: 118478438

Centisome position: 56.55

GC content: 29.67

Gene sequence:

>1230_bases
ATGAATACTTCCATCGATATACAACACTTGTGTGATCTTGCACATAAAGCATTTAATGCCCCTGTACATATTTTATCTGC
AGACAGAAAAATTTTATATCATTCTACATCTGATAATGTTTGTAGTCCTTTTTATTCTTCAAAAGAAGAACATCTTACTG
ATATTTATCAAGAAAACGATCCCTGTAACTTGCCACTTTTTCGAAGTAACAACTATCTTGAAAATTTTGTTCTAATTCAT
ATAGAAAATCATGATGATATTAAAGGGACTATTATAATCGGTCCTACTATACATTCAAAAGATTCAGATGATATGATCAT
AAAATTTCAGAAAGAATTTAAATCAAATGATAACATTCAAGAAAGACTTGCCTATTATCAGTGTTTATCTGAGATTAAAA
AAACTACATTAATTGATATGGGAATTTTATTACATTACATGATTTTCAATGAAAAGTTAGATGTAGATATTGTCTTGGAA
AAAAATAAAGTACTAGAGGAAGTTCCTAATAAAATTGTGAAACCTGATTTATATATTTTAAAACGCCGACAAAACAAACC
TAAAACGCACAATATGGCATTAGTAAATGATTTCTTTTCGACTATCAAAGAAGGAAATAAAAAAAAGTTAATACAGTATA
TGTATGCGGTTTCGCAAGAAGATGTTGAACTTATGCTAATAGAGGATCCGCTCAGGAATCAAAAAAACCTTGGAATTATT
GCGATTACCTTAGCCACTCGATATGCAATAGAAGGAAATCTGCCACCAGATATTGCTTTTGCTCATAGTATTTTATATAT
ACAAACCCTGGAACAATTAGATAATGTAGAATCTGTAAAGCGATTGTCAGGGGATGCTTTACGTACCTTTGCAGATCGTG
TGAAAGAATACAATGCAAAAAAGTATTCTTACGCGGTTACTACATGTATAAAACATATTAATAAAAATGTTTACGATGGA
ATATCTCTGAATGAACTTGCTAATCATTTAGAAATTACGCCTACTTATCTGTCTAAACTATTTAAAAAAGAAATGGGAAT
TACTTTAAGCGAATATATTCAAAGGGAACGAGTGGAAGAAGCAAAGAAATTATTAACACTTACTACTTATTCGTTATCAG
ATATCTGTGCTTGGCTTAACTTTAATGACCAAAGTTATTTTATAAGAGTTTTCAAAAAAATAACTAGCATGACTCCTAGG
CAGTACCGTGAAAAATATACAATAATATAA

Upstream 100 bases:

>100_bases
TATTTTGTTGTGAATTGTACTAATTTGATATTTTATAGTATTATTTGTCGTGAATTATATATAACAGAATATATTTTATG
GATCTATAAAGGAGAATGTA

Downstream 100 bases:

>100_bases
GTTTGTTATCTGCTGTCTCCAATGTAAAGACTTAAACATGGGTGTAAGTATCCGAAAAAATGAAAATTTACTAACCATTA
TTTTGCTAAAGAAAACAAAA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MNTSIDIQHLCDLAHKAFNAPVHILSADRKILYHSTSDNVCSPFYSSKEEHLTDIYQENDPCNLPLFRSNNYLENFVLIH
IENHDDIKGTIIIGPTIHSKDSDDMIIKFQKEFKSNDNIQERLAYYQCLSEIKKTTLIDMGILLHYMIFNEKLDVDIVLE
KNKVLEEVPNKIVKPDLYILKRRQNKPKTHNMALVNDFFSTIKEGNKKKLIQYMYAVSQEDVELMLIEDPLRNQKNLGII
AITLATRYAIEGNLPPDIAFAHSILYIQTLEQLDNVESVKRLSGDALRTFADRVKEYNAKKYSYAVTTCIKHINKNVYDG
ISLNELANHLEITPTYLSKLFKKEMGITLSEYIQRERVEEAKKLLTLTTYSLSDICAWLNFNDQSYFIRVFKKITSMTPR
QYREKYTII

Sequences:

>Translated_409_residues
MNTSIDIQHLCDLAHKAFNAPVHILSADRKILYHSTSDNVCSPFYSSKEEHLTDIYQENDPCNLPLFRSNNYLENFVLIH
IENHDDIKGTIIIGPTIHSKDSDDMIIKFQKEFKSNDNIQERLAYYQCLSEIKKTTLIDMGILLHYMIFNEKLDVDIVLE
KNKVLEEVPNKIVKPDLYILKRRQNKPKTHNMALVNDFFSTIKEGNKKKLIQYMYAVSQEDVELMLIEDPLRNQKNLGII
AITLATRYAIEGNLPPDIAFAHSILYIQTLEQLDNVESVKRLSGDALRTFADRVKEYNAKKYSYAVTTCIKHINKNVYDG
ISLNELANHLEITPTYLSKLFKKEMGITLSEYIQRERVEEAKKLLTLTTYSLSDICAWLNFNDQSYFIRVFKKITSMTPR
QYREKYTII
>Mature_409_residues
MNTSIDIQHLCDLAHKAFNAPVHILSADRKILYHSTSDNVCSPFYSSKEEHLTDIYQENDPCNLPLFRSNNYLENFVLIH
IENHDDIKGTIIIGPTIHSKDSDDMIIKFQKEFKSNDNIQERLAYYQCLSEIKKTTLIDMGILLHYMIFNEKLDVDIVLE
KNKVLEEVPNKIVKPDLYILKRRQNKPKTHNMALVNDFFSTIKEGNKKKLIQYMYAVSQEDVELMLIEDPLRNQKNLGII
AITLATRYAIEGNLPPDIAFAHSILYIQTLEQLDNVESVKRLSGDALRTFADRVKEYNAKKYSYAVTTCIKHINKNVYDG
ISLNELANHLEITPTYLSKLFKKEMGITLSEYIQRERVEEAKKLLTLTTYSLSDICAWLNFNDQSYFIRVFKKITSMTPR
QYREKYTII

Specific function: Positive regulatory protein of pdu and cob operons [H]

COG id: COG4753

COG function: function code T; Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=99, Percent_Identity=31.3131313131313, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789993, Length=100, Percent_Identity=33, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790391, Length=95, Percent_Identity=32.6315789473684, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR018771 [H]

Pfam domain/function: PF10114 Hist_Kin_Sens; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 47626; Mature: 47626

Theoretical pI: Translated: 7.17; Mature: 7.17

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTSIDIQHLCDLAHKAFNAPVHILSADRKILYHSTSDNVCSPFYSSKEEHLTDIYQEND
CCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCC
PCNLPLFRSNNYLENFVLIHIENHDDIKGTIIIGPTIHSKDSDDMIIKFQKEFKSNDNIQ
CCCCEEECCCCCCCEEEEEEECCCCCCEEEEEECCEECCCCCCCCEEEEEHHHCCCCCHH
ERLAYYQCLSEIKKTTLIDMGILLHYMIFNEKLDVDIVLEKNKVLEEVPNKIVKPDLYIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCHHHH
KRRQNKPKTHNMALVNDFFSTIKEGNKKKLIQYMYAVSQEDVELMLIEDPLRNQKNLGII
HHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEE
AITLATRYAIEGNLPPDIAFAHSILYIQTLEQLDNVESVKRLSGDALRTFADRVKEYNAK
EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
KYSYAVTTCIKHINKNVYDGISLNELANHLEITPTYLSKLFKKEMGITLSEYIQRERVEE
HHHHHHHHHHHHHCCHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
AKKLLTLTTYSLSDICAWLNFNDQSYFIRVFKKITSMTPRQYREKYTII
HHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCC
>Mature Secondary Structure
MNTSIDIQHLCDLAHKAFNAPVHILSADRKILYHSTSDNVCSPFYSSKEEHLTDIYQEND
CCCCCCHHHHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCC
PCNLPLFRSNNYLENFVLIHIENHDDIKGTIIIGPTIHSKDSDDMIIKFQKEFKSNDNIQ
CCCCEEECCCCCCCEEEEEEECCCCCCEEEEEECCEECCCCCCCCEEEEEHHHCCCCCHH
ERLAYYQCLSEIKKTTLIDMGILLHYMIFNEKLDVDIVLEKNKVLEEVPNKIVKPDLYIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCHHHH
KRRQNKPKTHNMALVNDFFSTIKEGNKKKLIQYMYAVSQEDVELMLIEDPLRNQKNLGII
HHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEE
AITLATRYAIEGNLPPDIAFAHSILYIQTLEQLDNVESVKRLSGDALRTFADRVKEYNAK
EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
KYSYAVTTCIKHINKNVYDGISLNELANHLEITPTYLSKLFKKEMGITLSEYIQRERVEE
HHHHHHHHHHHHHCCHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
AKKLLTLTTYSLSDICAWLNFNDQSYFIRVFKKITSMTPRQYREKYTII
HHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8071226; 9352910; 11677609; 8501034 [H]