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The map label for this gene is rtcB [H]

Identifier: 118478321

GI number: 118478321

Start: 2848697

End: 2849884

Strand: Reverse

Name: rtcB [H]

Synonym: BALH_2684

Alternate gene names: 118478321

Gene position: 2849884-2848697 (Counterclockwise)

Preceding gene: 118478322

Following gene: 118478319

Centisome position: 54.21

GC content: 34.01

Gene sequence:

>1188_bases
ATGTTGAAATTACAAGGAAAATACAATGAAGCGAAAGTATTTACGAATAACGTTGATGAGACTGCGACAGGGCAGATTAT
TGATCTTTGTAACCAAGAATTTGTAAAGGATAGTCAAATTCGTATTATGCCAGATACACATGCAGGAGCAGGTTGTACAA
TTGGGACAACAATGACAATACAAGATAAAATTGTTCCTAATCTTGTAGGGGTAGATATTGGGTGTGGGATGGAAGTTGTT
GTAATTGATAAGAACAAAGAAGAAATTAATTTCGATTACTTAGACGAAACAATTCGTAAATTCGTTCCAAGTGGTTTTCG
TATACGAGATAAGGAACATCGATTCTCAAAAATGATTGATTTTGATGGTGTGAGAGCTCCATTTACATTACAACGCGCTC
AAAAAAGTATTGGTACACTTGGGGGAGGAAATCATTTTGTCGAATTGAATGAGGACGATAAAGGTAATGTATATATTGTC
ATTCATAGTGGTTCGCGTAATTTAGGTAAGCAAATTGCAGAGTATTACCAAAACTTCGCATATGAACAACTTATTGATGT
TACATCAATGAAAGATGATATTATTAAGAGGTTAACTGAAGAGGGAAGAGCAAAAGAAATACAAGAAACTTTACGTGGAA
TTCAGAAGCCAAAGATTCGTAAAGAACTAGCTTATTTAGAAGGGCAAGGGTTCAAAGATTATATGAATGACATGAATATT
GCCCAAAAATATGCGGCGTTAAATCGTAAAGCAATGATTGATGAAATTGTTACGAAAATGGACTGGAAAATTACAGATCA
ATTTACTACAATACATAACTATATTGACATAGAAAATATGATTCTACGAAAAGGTGCTATTTCAGCTCAGAAAGATGAAC
GAGTCATTATTCCAATTAACATGAGAGATGGTTCAATTATTGCATTTGGTAAAGGGAATCCAGACTGGAATTTTTCTGGT
CCGCATGGGGCAGGACGTATCATGAGTCGTAAGAAGGCTAAAGAATCATTGAGTCTAGAGGAATTTCAAAATACGATGAC
AGAGGTTTGGACTACATCAGTAGTAGAAAGTACAATTGACGAGGCACCAATGGTATATAAGCCAATGAATGAAATTATAG
AAAATACAAAAGAAACGATAGATATAAAACACATTATTAAGCCGTTATATAATTTTAAAGCGAATTAG

Upstream 100 bases:

>100_bases
TCGTGCATATATAATGGAAAGCAGAAGGTGGATGAGAGTAATGATAAGAACAGAAACAACGTAATAAAATAATTCTTTCA
AAAGGAAGGGGAAATGAAAG

Downstream 100 bases:

>100_bases
AAGGATGAAAGACCGCACATGAAGTAAAAGCCATGTGCGGTCTTTTATATAAGCAGAGTATTATATAGTCTCGCTAATTT
TAGTTTCACTTTGACTGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTIQDKIVPNLVGVDIGCGMEVV
VIDKNKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMIDFDGVRAPFTLQRAQKSIGTLGGGNHFVELNEDDKGNVYIV
IHSGSRNLGKQIAEYYQNFAYEQLIDVTSMKDDIIKRLTEEGRAKEIQETLRGIQKPKIRKELAYLEGQGFKDYMNDMNI
AQKYAALNRKAMIDEIVTKMDWKITDQFTTIHNYIDIENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDWNFSG
PHGAGRIMSRKKAKESLSLEEFQNTMTEVWTTSVVESTIDEAPMVYKPMNEIIENTKETIDIKHIIKPLYNFKAN

Sequences:

>Translated_395_residues
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTIQDKIVPNLVGVDIGCGMEVV
VIDKNKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMIDFDGVRAPFTLQRAQKSIGTLGGGNHFVELNEDDKGNVYIV
IHSGSRNLGKQIAEYYQNFAYEQLIDVTSMKDDIIKRLTEEGRAKEIQETLRGIQKPKIRKELAYLEGQGFKDYMNDMNI
AQKYAALNRKAMIDEIVTKMDWKITDQFTTIHNYIDIENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDWNFSG
PHGAGRIMSRKKAKESLSLEEFQNTMTEVWTTSVVESTIDEAPMVYKPMNEIIENTKETIDIKHIIKPLYNFKAN
>Mature_395_residues
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTIQDKIVPNLVGVDIGCGMEVV
VIDKNKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMIDFDGVRAPFTLQRAQKSIGTLGGGNHFVELNEDDKGNVYIV
IHSGSRNLGKQIAEYYQNFAYEQLIDVTSMKDDIIKRLTEEGRAKEIQETLRGIQKPKIRKELAYLEGQGFKDYMNDMNI
AQKYAALNRKAMIDEIVTKMDWKITDQFTTIHNYIDIENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDWNFSG
PHGAGRIMSRKKAKESLSLEEFQNTMTEVWTTSVVESTIDEAPMVYKPMNEIIENTKETIDIKHIIKPLYNFKAN

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Escherichia coli, GI2367224, Length=420, Percent_Identity=31.4285714285714, Blast_Score=172, Evalue=5e-44,
Organism=Drosophila melanogaster, GI24585217, Length=437, Percent_Identity=22.1967963386728, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 44999; Mature: 44999

Theoretical pI: Translated: 6.21; Mature: 6.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTI
CEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEECEEEEE
QDKIVPNLVGVDIGCGMEVVVIDKNKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMID
HHHHCCHHHCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEECCHHHHHHHHHC
FDGVRAPFTLQRAQKSIGTLGGGNHFVELNEDDKGNVYIVIHSGSRNLGKQIAEYYQNFA
CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
YEQLIDVTSMKDDIIKRLTEEGRAKEIQETLRGIQKPKIRKELAYLEGQGFKDYMNDMNI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHH
AQKYAALNRKAMIDEIVTKMDWKITDQFTTIHNYIDIENMILRKGAISAQKDERVIIPIN
HHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
MRDGSIIAFGKGNPDWNFSGPHGAGRIMSRKKAKESLSLEEFQNTMTEVWTTSVVESTID
ECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
EAPMVYKPMNEIIENTKETIDIKHIIKPLYNFKAN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTI
CEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEECEEEEE
QDKIVPNLVGVDIGCGMEVVVIDKNKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMID
HHHHCCHHHCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEECCHHHHHHHHHC
FDGVRAPFTLQRAQKSIGTLGGGNHFVELNEDDKGNVYIVIHSGSRNLGKQIAEYYQNFA
CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
YEQLIDVTSMKDDIIKRLTEEGRAKEIQETLRGIQKPKIRKELAYLEGQGFKDYMNDMNI
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHH
AQKYAALNRKAMIDEIVTKMDWKITDQFTTIHNYIDIENMILRKGAISAQKDERVIIPIN
HHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
MRDGSIIAFGKGNPDWNFSGPHGAGRIMSRKKAKESLSLEEFQNTMTEVWTTSVVESTID
ECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
EAPMVYKPMNEIIENTKETIDIKHIIKPLYNFKAN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]