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The map label for this gene is yqiR [H]

Identifier: 118478295

GI number: 118478295

Start: 2818945

End: 2820684

Strand: Reverse

Name: yqiR [H]

Synonym: BALH_2657

Alternate gene names: 118478295

Gene position: 2820684-2818945 (Counterclockwise)

Preceding gene: 118478296

Following gene: 118478294

Centisome position: 53.65

GC content: 37.41

Gene sequence:

>1740_bases
ATGCATATGGGCGAACGAATGAATTTGCGGGTAACTAATCAGGCTCTTCAGGTAATGAATAACGGAATTGCTGTTATAAG
TCATGATGGAATCATCACATACAGTAACAAACTATTCTGTAGCATGTTACATAAAAAAGAAACCGAAATAATAGGTGAGC
ATATATCAACGATTATTCCTGATCGTAAAAAACTAGTAGTGAATCAAAATGATAGTTTGTATAGGTATGAATGTAAGAGT
GGCAATCAAGTTGTAATTGTGAATGAATGCCGTGTGTATAAGGATGGGACAGAAGACGGATCAATTGCTATTCTGGAGAG
AAAGGGTAAAAGTATACAGTCTTTGGAAAGTATCATAAGTCGATATGAAAGCGCATTGAATTTACTGTCGGAGTGTATTC
TAGGTGTAAATGAACAAGGAATTGTTAATTTTTTAAGTGGCTCTTATGCAAAATTTTTAGGGATAGATGATCCGAATGAA
GCGGTGGGTAAACATTGTACGGAGGTTGTTGAGAATACGAGGATGCATATAATTGTAAAGACGGGACAGACGGAAATTGG
GCATATTCAGCGTATAAGTAATCGGAATATAATTGCAACGCGCATACCGATCGTTAAAGACGGTAAGATTATTGGAGCAA
TTGGTAAAATTATGTTTCATGATATACAGCAGTTTAAAGCTTTAGGAGATCAAATTAGTGAAATGGAATCAAAGTTATCT
TACTATCAAACTGAATTACAGCGGCTACAAGAAGGGCGGCTTTCTTTTCAAAGTATTATAGGTGAGAGTGCAAAAATGAA
AGAAGTCAAAATGATGGCTTTAAAAGTTTCTAAAAGTCGGTCTACTGTTTTGATAAGAGGAGAAAGTGGTACGGGAAAGG
AACTCTTTGCACATGCGGTACACCGTGCAAGTCCGCGTGCTAGTGGTACATTTATTCGTTTGAATTGTGCTGCGATTCCG
AGAGATCTTTTGGAAGCTGAATTATTTGGATACGAAGAAGGGGCTTTTACAGGAGCGAAAAAAGGTGGTAAGCCTGGGAA
GATTGAGTTAGCCGAAAAGGGAACGTTATTCTTAGATGAAATTGGTGATATGTCTTTGGACATGCAAGTGAAGCTACTTC
GTGTATTGCAAGAGAAAGAGATTGAAAGAATTGGCGGTACGAAAATTCAAAAGGTTGATGTTCGTTTCATTGCGGCGACA
CATCGAAATCTCCGTGAAATGGTGCAAAGAGGGGAGTTCAGAGAGGATTTATATTATAGGTTGAATGTGTTTGAGATTGC
TATTCCTCCGTTACGAGAGAGAAAAGAAGATATGATACATATAACGGAATTTTTAATTAAGAAATTGAATGGTGAGCTAG
GTAGTAACGTTATTTCATTTGATGAGAGAGTTAGAGAGATATTCATGGAGCATGATTGGCCAGGGAATATTAGGGAGCTA
GAAAATGTATTAGAACGAGCGATGAATGTTATAGAAGGAATGATTATTCAAGTGCATCATCTTCCGGCCTATTTACGGAA
AAAAGATAAGGAAGAAGAGTTATACCATGACATATTTACGATAGATCAAAAACAGAATGAGGGGGAGTATTCACTTCAGG
CGGAAGTGGAATCCGCTGAAAAACGTGCGATTACGAGAGCTTTGGAAAAAACAGCTGGAAATATAAAAGAGGCAGCCAGG
CTTTTAGGCATTCATCGGGCTAGCTTATATCGAAAAATAGAAAAATATGAAATATCATGA

Upstream 100 bases:

>100_bases
AAATTATAATTTCAAACGGAAAAACCAAAGGAAAGTAAATATTTAAAATGAATATATAATACATGCGAAAAAGAGCGCAA
TTGGATAGGGAGGCTTTCAA

Downstream 100 bases:

>100_bases
AGGAAAGTAAAGGGCAAACAGGCCCTTTTTTTTGTTTGTAGTAATAAATACTGTCTCTTTTTTGCGACGTTTTCTTATAG
ATGCGACATGGTTGCTAATA

Product: sensory box sigma-54 dependent DNA-binding response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 579; Mature: 579

Protein sequence:

>579_residues
MHMGERMNLRVTNQALQVMNNGIAVISHDGIITYSNKLFCSMLHKKETEIIGEHISTIIPDRKKLVVNQNDSLYRYECKS
GNQVVIVNECRVYKDGTEDGSIAILERKGKSIQSLESIISRYESALNLLSECILGVNEQGIVNFLSGSYAKFLGIDDPNE
AVGKHCTEVVENTRMHIIVKTGQTEIGHIQRISNRNIIATRIPIVKDGKIIGAIGKIMFHDIQQFKALGDQISEMESKLS
YYQTELQRLQEGRLSFQSIIGESAKMKEVKMMALKVSKSRSTVLIRGESGTGKELFAHAVHRASPRASGTFIRLNCAAIP
RDLLEAELFGYEEGAFTGAKKGGKPGKIELAEKGTLFLDEIGDMSLDMQVKLLRVLQEKEIERIGGTKIQKVDVRFIAAT
HRNLREMVQRGEFREDLYYRLNVFEIAIPPLRERKEDMIHITEFLIKKLNGELGSNVISFDERVREIFMEHDWPGNIREL
ENVLERAMNVIEGMIIQVHHLPAYLRKKDKEEELYHDIFTIDQKQNEGEYSLQAEVESAEKRAITRALEKTAGNIKEAAR
LLGIHRASLYRKIEKYEIS

Sequences:

>Translated_579_residues
MHMGERMNLRVTNQALQVMNNGIAVISHDGIITYSNKLFCSMLHKKETEIIGEHISTIIPDRKKLVVNQNDSLYRYECKS
GNQVVIVNECRVYKDGTEDGSIAILERKGKSIQSLESIISRYESALNLLSECILGVNEQGIVNFLSGSYAKFLGIDDPNE
AVGKHCTEVVENTRMHIIVKTGQTEIGHIQRISNRNIIATRIPIVKDGKIIGAIGKIMFHDIQQFKALGDQISEMESKLS
YYQTELQRLQEGRLSFQSIIGESAKMKEVKMMALKVSKSRSTVLIRGESGTGKELFAHAVHRASPRASGTFIRLNCAAIP
RDLLEAELFGYEEGAFTGAKKGGKPGKIELAEKGTLFLDEIGDMSLDMQVKLLRVLQEKEIERIGGTKIQKVDVRFIAAT
HRNLREMVQRGEFREDLYYRLNVFEIAIPPLRERKEDMIHITEFLIKKLNGELGSNVISFDERVREIFMEHDWPGNIREL
ENVLERAMNVIEGMIIQVHHLPAYLRKKDKEEELYHDIFTIDQKQNEGEYSLQAEVESAEKRAITRALEKTAGNIKEAAR
LLGIHRASLYRKIEKYEIS
>Mature_579_residues
MHMGERMNLRVTNQALQVMNNGIAVISHDGIITYSNKLFCSMLHKKETEIIGEHISTIIPDRKKLVVNQNDSLYRYECKS
GNQVVIVNECRVYKDGTEDGSIAILERKGKSIQSLESIISRYESALNLLSECILGVNEQGIVNFLSGSYAKFLGIDDPNE
AVGKHCTEVVENTRMHIIVKTGQTEIGHIQRISNRNIIATRIPIVKDGKIIGAIGKIMFHDIQQFKALGDQISEMESKLS
YYQTELQRLQEGRLSFQSIIGESAKMKEVKMMALKVSKSRSTVLIRGESGTGKELFAHAVHRASPRASGTFIRLNCAAIP
RDLLEAELFGYEEGAFTGAKKGGKPGKIELAEKGTLFLDEIGDMSLDMQVKLLRVLQEKEIERIGGTKIQKVDVRFIAAT
HRNLREMVQRGEFREDLYYRLNVFEIAIPPLRERKEDMIHITEFLIKKLNGELGSNVISFDERVREIFMEHDWPGNIREL
ENVLERAMNVIEGMIIQVHHLPAYLRKKDKEEELYHDIFTIDQKQNEGEYSLQAEVESAEKRAITRALEKTAGNIKEAAR
LLGIHRASLYRKIEKYEIS

Specific function: Member Of The Two-Component Regulatory System Atos/Atoc Involved In The Transcriptional Regulation Of The Ato Genes For Acetoacetate Metabolism. Also An Inhibitor Of Polyamine Biosynthesis. [C]

COG id: COG3829

COG function: function code KT; Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 sigma-54 factor interaction domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=322, Percent_Identity=45.3416149068323, Blast_Score=271, Evalue=1e-73,
Organism=Escherichia coli, GI1790299, Length=356, Percent_Identity=42.9775280898876, Blast_Score=264, Evalue=1e-71,
Organism=Escherichia coli, GI1789233, Length=476, Percent_Identity=35.9243697478992, Blast_Score=263, Evalue=2e-71,
Organism=Escherichia coli, GI1789087, Length=326, Percent_Identity=44.7852760736196, Blast_Score=255, Evalue=4e-69,
Organism=Escherichia coli, GI1790437, Length=317, Percent_Identity=44.794952681388, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI87082117, Length=357, Percent_Identity=40.3361344537815, Blast_Score=251, Evalue=1e-67,
Organism=Escherichia coli, GI1786524, Length=337, Percent_Identity=39.1691394658754, Blast_Score=239, Evalue=5e-64,
Organism=Escherichia coli, GI1788905, Length=322, Percent_Identity=40.0621118012422, Blast_Score=231, Evalue=1e-61,
Organism=Escherichia coli, GI87082152, Length=319, Percent_Identity=40.7523510971787, Blast_Score=221, Evalue=7e-59,
Organism=Escherichia coli, GI1787583, Length=327, Percent_Identity=37.0030581039755, Blast_Score=218, Evalue=1e-57,
Organism=Escherichia coli, GI87081872, Length=232, Percent_Identity=44.8275862068966, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI87081858, Length=482, Percent_Identity=28.2157676348548, Blast_Score=150, Evalue=3e-37,
Organism=Escherichia coli, GI1789828, Length=218, Percent_Identity=34.8623853211009, Blast_Score=137, Evalue=1e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR020441
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR002197
- InterPro:   IPR016040
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR013767
- InterPro:   IPR002078 [H]

Pfam domain/function: PF02954 HTH_8; PF00989 PAS; PF00158 Sigma54_activat [H]

EC number: NA

Molecular weight: Translated: 65789; Mature: 65789

Theoretical pI: Translated: 7.70; Mature: 7.70

Prosite motif: PS00675 SIGMA54_INTERACT_1 ; PS00676 SIGMA54_INTERACT_2 ; PS00688 SIGMA54_INTERACT_3 ; PS50045 SIGMA54_INTERACT_4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHMGERMNLRVTNQALQVMNNGIAVISHDGIITYSNKLFCSMLHKKETEIIGEHISTIIP
CCCCCCCCEEEHHHHHHHHCCCEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
DRKKLVVNQNDSLYRYECKSGNQVVIVNECRVYKDGTEDGSIAILERKGKSIQSLESIIS
CCCEEEECCCCCEEEEEECCCCEEEEEECCEEEECCCCCCCEEEEECCCCCHHHHHHHHH
RYESALNLLSECILGVNEQGIVNFLSGSYAKFLGIDDPNEAVGKHCTEVVENTRMHIIVK
HHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCEEEEEEE
TGQTEIGHIQRISNRNIIATRIPIVKDGKIIGAIGKIMFHDIQQFKALGDQISEMESKLS
CCCCCHHHHHHHCCCCEEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YYQTELQRLQEGRLSFQSIIGESAKMKEVKMMALKVSKSRSTVLIRGESGTGKELFAHAV
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH
HRASPRASGTFIRLNCAAIPRDLLEAELFGYEEGAFTGAKKGGKPGKIELAEKGTLFLDE
HHCCCCCCCCEEEEEHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEC
IGDMSLDMQVKLLRVLQEKEIERIGGTKIQKVDVRFIAATHRNLREMVQRGEFREDLYYR
CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHE
LNVFEIAIPPLRERKEDMIHITEFLIKKLNGELGSNVISFDERVREIFMEHDWPGNIREL
EEEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHCCCCCCCHHHH
ENVLERAMNVIEGMIIQVHHLPAYLRKKDKEEELYHDIFTIDQKQNEGEYSLQAEVESAE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHH
KRAITRALEKTAGNIKEAARLLGIHRASLYRKIEKYEIS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHMGERMNLRVTNQALQVMNNGIAVISHDGIITYSNKLFCSMLHKKETEIIGEHISTIIP
CCCCCCCCEEEHHHHHHHHCCCEEEEECCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCC
DRKKLVVNQNDSLYRYECKSGNQVVIVNECRVYKDGTEDGSIAILERKGKSIQSLESIIS
CCCEEEECCCCCEEEEEECCCCEEEEEECCEEEECCCCCCCEEEEECCCCCHHHHHHHHH
RYESALNLLSECILGVNEQGIVNFLSGSYAKFLGIDDPNEAVGKHCTEVVENTRMHIIVK
HHHHHHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHCCEEEEEEE
TGQTEIGHIQRISNRNIIATRIPIVKDGKIIGAIGKIMFHDIQQFKALGDQISEMESKLS
CCCCCHHHHHHHCCCCEEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YYQTELQRLQEGRLSFQSIIGESAKMKEVKMMALKVSKSRSTVLIRGESGTGKELFAHAV
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHH
HRASPRASGTFIRLNCAAIPRDLLEAELFGYEEGAFTGAKKGGKPGKIELAEKGTLFLDE
HHCCCCCCCCEEEEEHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEC
IGDMSLDMQVKLLRVLQEKEIERIGGTKIQKVDVRFIAATHRNLREMVQRGEFREDLYYR
CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHCCCHHHHHHHE
LNVFEIAIPPLRERKEDMIHITEFLIKKLNGELGSNVISFDERVREIFMEHDWPGNIREL
EEEEEEECCCHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHCCCCCCCHHHH
ENVLERAMNVIEGMIIQVHHLPAYLRKKDKEEELYHDIFTIDQKQNEGEYSLQAEVESAE
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHH
KRAITRALEKTAGNIKEAARLLGIHRASLYRKIEKYEIS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]