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The map label for this gene is yurR [H]

Identifier: 118478087

GI number: 118478087

Start: 2608202

End: 2609326

Strand: Reverse

Name: yurR [H]

Synonym: BALH_2442

Alternate gene names: 118478087

Gene position: 2609326-2608202 (Counterclockwise)

Preceding gene: 118478088

Following gene: 118478086

Centisome position: 49.63

GC content: 39.2

Gene sequence:

>1125_bases
GTGTTTGAAATGAAATCGTATATTGTAGTTGGAGCTGGAATTTTAGGAGCGTCTACTGCTTATCATCTTGCTAAGGCTGG
CGTGAACGTTACTATCGTGGATCGTCAACAAGTAGGTCAAGCAACAGATGCAGCAGCAGGTATTGTCTGTCCATGGCTTT
CGCAACGTCGTAATAAAGCATGGTATAAAATCGTTAAAGGCGGTGCACGTTACTATTCTTCGTTAATTCAGCAATTAGAA
GAAGACGGTGAAACGGATACAGGTTATAAACGTGTAGGTGCAATTAGTTTACATACTGATGAGAAAAAACTAGATCAAAT
GGAAGAGCGAGCTTACAAGCGTCGTGAAGATGCACCAGAGATTGGTGAAATTACGCGTTTATCAGCTGAAGAAACGAAAA
AATTATTCCCAGCATTATCAGAAGAATATAGTTGTGTTCATATTAGTGGTGCTGCACGAGTAAATGGAAGATTATTACGC
AACGCATTAATAAGCGCTGCGAAAAAACATGGTGCAACTTTTATAAAAGGCGATGCAGTATTAGTCCGTGAAGGTAATCA
TATTACGGGTGTTAAAGTAAACGATGAAACAATTTTAGCAGAAAAGGTTATTGTAACGGCAGGTGCATGGGCGAACGAAA
TCTTAAACCCATTAGGAATTAATTTCTTAGTTACTTTCCAAAAAGGACAAATTGTTCACCTGCAAATGGAAAATACAGCA
ACAGAAAATATGCCAGTTATTATGCCGCCAAATGATCAATACATTTTAACATTTGACAATGGCCATGTCGTAATTGGTGC
AACACATGAGAATGAAACTGGTTTCGATCAACGTGTAACGGCTGGTGGTTTACATGAAGTATTCCATAAAGCAATAACAG
TTGCACCTGGCTTAGAAAATGCTACTATGCTTGAAACGAGAGTTGGATTCAGACCATTCACGCCAGGATTCTTACCTGTT
ATTGGACCACTTCCTAACTTTGAAGGCATTCTCGTTGCGAACGGATTAGGTGCTTCAGGTTTAACTGCAGGTCCATATTT
AGGTTCAGAACTTGCTAAATTAGCGCTAGGACAACCAATTGAGTTAGATTTAAATGATTATGACGTTGCGGGCGCAATTG
AATAA

Upstream 100 bases:

>100_bases
ATGATGCAACAATTAATTGAGCTTGGCACATTGTAAAAAGGATTCCTTTCAGTATACTAAAGTATGTTCTTATATTTAAA
TAATTAGCAAAAGAGAAAAG

Downstream 100 bases:

>100_bases
TATCGGGTATGAAAAAAACACGCTAAGCAAATTCGAAGGAAATAAGCAGTTTTTTCTCCGTTAAGAGTAAGACTGTTTAT
GAAAAATAAAATTCTTTAAA

Product: D-amino acid dehydrogenase, small subunit

Products: 2-oxo acid; NH3; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MFEMKSYIVVGAGILGASTAYHLAKAGVNVTIVDRQQVGQATDAAAGIVCPWLSQRRNKAWYKIVKGGARYYSSLIQQLE
EDGETDTGYKRVGAISLHTDEKKLDQMEERAYKRREDAPEIGEITRLSAEETKKLFPALSEEYSCVHISGAARVNGRLLR
NALISAAKKHGATFIKGDAVLVREGNHITGVKVNDETILAEKVIVTAGAWANEILNPLGINFLVTFQKGQIVHLQMENTA
TENMPVIMPPNDQYILTFDNGHVVIGATHENETGFDQRVTAGGLHEVFHKAITVAPGLENATMLETRVGFRPFTPGFLPV
IGPLPNFEGILVANGLGASGLTAGPYLGSELAKLALGQPIELDLNDYDVAGAIE

Sequences:

>Translated_374_residues
MFEMKSYIVVGAGILGASTAYHLAKAGVNVTIVDRQQVGQATDAAAGIVCPWLSQRRNKAWYKIVKGGARYYSSLIQQLE
EDGETDTGYKRVGAISLHTDEKKLDQMEERAYKRREDAPEIGEITRLSAEETKKLFPALSEEYSCVHISGAARVNGRLLR
NALISAAKKHGATFIKGDAVLVREGNHITGVKVNDETILAEKVIVTAGAWANEILNPLGINFLVTFQKGQIVHLQMENTA
TENMPVIMPPNDQYILTFDNGHVVIGATHENETGFDQRVTAGGLHEVFHKAITVAPGLENATMLETRVGFRPFTPGFLPV
IGPLPNFEGILVANGLGASGLTAGPYLGSELAKLALGQPIELDLNDYDVAGAIE
>Mature_374_residues
MFEMKSYIVVGAGILGASTAYHLAKAGVNVTIVDRQQVGQATDAAAGIVCPWLSQRRNKAWYKIVKGGARYYSSLIQQLE
EDGETDTGYKRVGAISLHTDEKKLDQMEERAYKRREDAPEIGEITRLSAEETKKLFPALSEEYSCVHISGAARVNGRLLR
NALISAAKKHGATFIKGDAVLVREGNHITGVKVNDETILAEKVIVTAGAWANEILNPLGINFLVTFQKGQIVHLQMENTA
TENMPVIMPPNDQYILTFDNGHVVIGATHENETGFDQRVTAGGLHEVFHKAITVAPGLENATMLETRVGFRPFTPGFLPV
IGPLPNFEGILVANGLGASGLTAGPYLGSELAKLALGQPIELDLNDYDVAGAIE

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DadA oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=390, Percent_Identity=25.8974358974359, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI21361378, Length=390, Percent_Identity=25.8974358974359, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI24797151, Length=400, Percent_Identity=24, Blast_Score=75, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI71994045, Length=389, Percent_Identity=22.879177377892, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71994052, Length=394, Percent_Identity=22.5888324873096, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI20130091, Length=385, Percent_Identity=27.2727272727273, Blast_Score=93, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: 1.4.99.1

Molecular weight: Translated: 40450; Mature: 40450

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEMKSYIVVGAGILGASTAYHLAKAGVNVTIVDRQQVGQATDAAAGIVCPWLSQRRNKA
CCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEHHHCCCHHHCCCCEECCHHHHHCCHH
WYKIVKGGARYYSSLIQQLEEDGETDTGYKRVGAISLHTDEKKLDQMEERAYKRREDAPE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEEECCHHHHHHHHHHHHHHHCCCCC
IGEITRLSAEETKKLFPALSEEYSCVHISGAARVNGRLLRNALISAAKKHGATFIKGDAV
HHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCEE
LVREGNHITGVKVNDETILAEKVIVTAGAWANEILNPLGINFLVTFQKGQIVHLQMENTA
EEECCCEEEEEEECCCEEEEEEEEEECCCCHHHHHHHCCCEEEEEEECCCEEEEEECCCC
TENMPVIMPPNDQYILTFDNGHVVIGATHENETGFDQRVTAGGLHEVFHKAITVAPGLEN
CCCCCEEECCCCCEEEEECCCEEEEEEECCCCCCCCHHCCCCHHHHHHHHHEEECCCCCC
ATMLETRVGFRPFTPGFLPVIGPLPNFEGILVANGLGASGLTAGPYLGSELAKLALGQPI
CEEEHHHCCCCCCCCCCCHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCE
ELDLNDYDVAGAIE
EECCCCCCCCCCCC
>Mature Secondary Structure
MFEMKSYIVVGAGILGASTAYHLAKAGVNVTIVDRQQVGQATDAAAGIVCPWLSQRRNKA
CCCCCEEEEEECCHHHHHHHHHHHHCCCEEEEEEHHHCCCHHHCCCCEECCHHHHHCCHH
WYKIVKGGARYYSSLIQQLEEDGETDTGYKRVGAISLHTDEKKLDQMEERAYKRREDAPE
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEEEEEEEECCHHHHHHHHHHHHHHHCCCCC
IGEITRLSAEETKKLFPALSEEYSCVHISGAARVNGRLLRNALISAAKKHGATFIKGDAV
HHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCEE
LVREGNHITGVKVNDETILAEKVIVTAGAWANEILNPLGINFLVTFQKGQIVHLQMENTA
EEECCCEEEEEEECCCEEEEEEEEEECCCCHHHHHHHCCCEEEEEEECCCEEEEEECCCC
TENMPVIMPPNDQYILTFDNGHVVIGATHENETGFDQRVTAGGLHEVFHKAITVAPGLEN
CCCCCEEECCCCCEEEEECCCEEEEEEECCCCCCCCHHCCCCHHHHHHHHHEEECCCCCC
ATMLETRVGFRPFTPGFLPVIGPLPNFEGILVANGLGASGLTAGPYLGSELAKLALGQPI
CEEEHHHCCCCCCCCCCCHHCCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHCCCCE
ELDLNDYDVAGAIE
EECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-amino acid; H2O; acceptor

Specific reaction: a D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]