Click here to switch to the map view.

The map label for this gene is dacA [H]

Identifier: 118477954

GI number: 118477954

Start: 2469122

End: 2470138

Strand: Reverse

Name: dacA [H]

Synonym: BALH_2300

Alternate gene names: 118477954

Gene position: 2470138-2469122 (Counterclockwise)

Preceding gene: 118477955

Following gene: 118477940

Centisome position: 46.99

GC content: 30.88

Gene sequence:

>1017_bases
ATGCAATTCTTAAAAAAAATCACAATTTTATTATTATCTTTTGTTATTACCGCTCTTATCGTTTTATATTTTTATCTTTA
TGTAAATGGTCCCATTATTCAAGCTAAATCAGCTATTTTAATAGATGCCAATTCAGGTGAAGTTGTTTATAAAAAAAATG
AAGAAACTTCTATACAATCGGCTACCTTATCTAAATTAATGACAGAATATATCGTACTAGAACAACTGGATAAAGGAAAT
ATACAGTTAGATGAAGTAGTAAAAATAAGTAACGAAGTTTTCCGAGCAGAAACGAGTCCTATACAAGTAACTTCGAAAGA
TAAAACAACGGTTCGTGATTTACTTCATGCATTGTTATTGACAGGGAATAATCGTTCCACACTTGCCCTTGCAGAACACA
TTGCTGGAAACGAAGATAATTTCACTCAGCTAATGAATGAAAAAGCAAAACAACTAAAGTTATCACAACCATTTCCGTTT
CTAAACGCTACTGGAATGAATAACGGTACAAATAAACTTTCAACTACAACAGCAATTGAAGTTGGTAAACTAGCAACAAG
ATTAGTAACAGACTTTCCAGATGTACTGAACGTTACAAAACTAACCTCTTACCAGTTCACCTTCAAAGATACCAAAGTTT
TCAATACCAATAAAATGATTTATTCCCTAAATAAAAACATTAAACTCCAAGGTGTTGATGGCTTACAAACTAGTTTTTCA
ACTAATAGTAATTATAGTTTTGTCAGTACAGCAAAACGAGGAGATACTAGACTTATTTCAGTAATATTAGACGCCGATAA
TGAAAACAGTACTTTTATTGAAACAAAAAAATTACTACAGTACGGCTTTGATCCCTCCTCATACTCTGCACTCCAAGCAT
TTAAAGATGCTGTTACATCTTGGGCAGTTTTGCTTCAGTTTAAAAATTTGATCATACAAACATTGTTGATTTTCTTTATT
ATTACAATTTTAATGTTTTTACATATACGTCAAAAAAAATCCGAGGATTTCAATTAG

Upstream 100 bases:

>100_bases
TCCTTTATAATTCTTTAGAAATTCTTTACCTTTTCTTTCTTCCTAATTAAGTATTCCTTTTTACAATATTATTATCGACG
TCATAATAGGAGGATCGCTT

Downstream 100 bases:

>100_bases
GAAATCTTCTTATATATATAAAACGGCTTGCATTTACGGTACAAGCCGTTTTTTTAACTATAGTCCTCTTCCAATTAAAT
TCGCTGAAACAGGCTGAAGA

Product: D-alanyl-D-alanine carboxypeptidase

Products: NA

Alternate protein names: CPase; DD-carboxypeptidase; DD-peptidase; Penicillin-binding protein 5; PBP-5 [H]

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MQFLKKITILLLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEETSIQSATLSKLMTEYIVLEQLDKGN
IQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQPFPF
LNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFS
TNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFDPSSYSALQAFKDAVTSWAVLLQFKNLIIQTLLIFFI
ITILMFLHIRQKKSEDFN

Sequences:

>Translated_338_residues
MQFLKKITILLLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEETSIQSATLSKLMTEYIVLEQLDKGN
IQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQPFPF
LNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFS
TNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFDPSSYSALQAFKDAVTSWAVLLQFKNLIIQTLLIFFI
ITILMFLHIRQKKSEDFN
>Mature_338_residues
MQFLKKITILLLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEETSIQSATLSKLMTEYIVLEQLDKGN
IQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLLTGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQPFPF
LNATGMNNGTNKLSTTTAIEVGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFS
TNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFDPSSYSALQAFKDAVTSWAVLLQFKNLIIQTLLIFFI
ITILMFLHIRQKKSEDFN

Specific function: Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors [H]

COG id: COG1686

COG function: function code M; D-alanyl-D-alanine carboxypeptidase

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S11 family [H]

Homologues:

Organism=Escherichia coli, GI1787062, Length=266, Percent_Identity=30.8270676691729, Blast_Score=133, Evalue=2e-32,
Organism=Escherichia coli, GI87082022, Length=263, Percent_Identity=27.7566539923954, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1786851, Length=266, Percent_Identity=28.9473684210526, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87082054, Length=259, Percent_Identity=25.8687258687259, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR015956
- InterPro:   IPR018044
- InterPro:   IPR012907
- InterPro:   IPR001967 [H]

Pfam domain/function: PF07943 PBP5_C; PF00768 Peptidase_S11 [H]

EC number: =3.4.16.4 [H]

Molecular weight: Translated: 38022; Mature: 38022

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFLKKITILLLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEETSIQS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEECCCCCEEEECCCCCHHHH
ATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLL
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
TGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQPFPFLNATGMNNGTNKLSTTTAIE
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
VGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFS
HHHHHHHHHHCCHHHHHHHHHEEEEEEECCCEEEECCCEEEEECCCEEEEECCCCHHCCC
TNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFDPSSYSALQAFKDAVTS
CCCCCEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
WAVLLQFKNLIIQTLLIFFIITILMFLHIRQKKSEDFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQFLKKITILLLSFVITALIVLYFYLYVNGPIIQAKSAILIDANSGEVVYKKNEETSIQS
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEECCCCCEEEECCCCCHHHH
ATLSKLMTEYIVLEQLDKGNIQLDEVVKISNEVFRAETSPIQVTSKDKTTVRDLLHALLL
HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHH
TGNNRSTLALAEHIAGNEDNFTQLMNEKAKQLKLSQPFPFLNATGMNNGTNKLSTTTAIE
CCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
VGKLATRLVTDFPDVLNVTKLTSYQFTFKDTKVFNTNKMIYSLNKNIKLQGVDGLQTSFS
HHHHHHHHHHCCHHHHHHHHHEEEEEEECCCEEEECCCEEEEECCCEEEEECCCCHHCCC
TNSNYSFVSTAKRGDTRLISVILDADNENSTFIETKKLLQYGFDPSSYSALQAFKDAVTS
CCCCCEEEEECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
WAVLLQFKNLIIQTLLIFFIITILMFLHIRQKKSEDFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8370539; 6780559; 111240 [H]