Click here to switch to the map view.

The map label for this gene is racD [H]

Identifier: 118477654

GI number: 118477654

Start: 2137213

End: 2137911

Strand: Direct

Name: racD [H]

Synonym: BALH_1986

Alternate gene names: 118477654

Gene position: 2137213-2137911 (Clockwise)

Preceding gene: 118477653

Following gene: 118477655

Centisome position: 40.65

GC content: 31.47

Gene sequence:

>699_bases
ATGAAAACGATAGGTTTAATTGGTGGTATGAGTTGGGAATCAACTGCTGAATATTATCGAATCATAAATGAAGAAATAAA
AAGTAGATTAGGTGGGTTACATTCAGCTAAATGTTTAATTAATAGTGTAGACTTTGAAGAGATTGAACGATATCAGTCTA
GCGGTGATTGGGATAGTGCAGGAGAAATTCTAGGGAATGCAGCATATTCATTACAAAAGGGAGGAGCAGATTTTATAATT
ATTTGTACAAATACAATGCATAAAGTAGTTGAGAAAATAAAGGAGAATATTCATATTCCAATCTTACATATTGCTGATGC
AACTGCAAAAGAAATTAAAAGAAAAGATATTCAAACAGTTGGTTTGCTTGGAACTAAATATACAATGGAGCAAGATTTCT
ATAAGTCACGTATTGAAGAGAATCATATAAAAGTAGTGGTACCATCAGAAAAGGATAGAGATAAGGTAAATGAAGTAATA
TATACAGAATTGTGCTTAGGAAAGATAACATCTCAATCTAGAGAGTATTATAAAAGGGTTATAGAAAATCTAATACAAGA
AGGGGCCCAAGGAATTATTTTAGGATGTACAGAAATAGGATTATTAATTAAACAGGAAGACGTATCAGTTCCGATATTCG
ATACAACTTACATACATGCAGTTGAAGCAGTTCATTTCGCTTTACGAAATAGAGTATAA

Upstream 100 bases:

>100_bases
CTTTATATTTCAAACGTAAAGTCTTGCTTTATTATGTATAATATACATAATAAAATGTTGTAATTAACTTTAAAAAATAG
TGTAAGGTAGGTGTAAGTTA

Downstream 100 bases:

>100_bases
TTATATTATGTAACCTATTTTGTGTATGTGGAAAACATTCAGAAAATATTTTATAATGTAAGTGGTTACATTTAAGGGGG
AATGCGTATGTTCTCGGTTC

Product: aspartate racemase

Products: D-aspartate

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKTIGLIGGMSWESTAEYYRIINEEIKSRLGGLHSAKCLINSVDFEEIERYQSSGDWDSAGEILGNAAYSLQKGGADFII
ICTNTMHKVVEKIKENIHIPILHIADATAKEIKRKDIQTVGLLGTKYTMEQDFYKSRIEENHIKVVVPSEKDRDKVNEVI
YTELCLGKITSQSREYYKRVIENLIQEGAQGIILGCTEIGLLIKQEDVSVPIFDTTYIHAVEAVHFALRNRV

Sequences:

>Translated_232_residues
MKTIGLIGGMSWESTAEYYRIINEEIKSRLGGLHSAKCLINSVDFEEIERYQSSGDWDSAGEILGNAAYSLQKGGADFII
ICTNTMHKVVEKIKENIHIPILHIADATAKEIKRKDIQTVGLLGTKYTMEQDFYKSRIEENHIKVVVPSEKDRDKVNEVI
YTELCLGKITSQSREYYKRVIENLIQEGAQGIILGCTEIGLLIKQEDVSVPIFDTTYIHAVEAVHFALRNRV
>Mature_232_residues
MKTIGLIGGMSWESTAEYYRIINEEIKSRLGGLHSAKCLINSVDFEEIERYQSSGDWDSAGEILGNAAYSLQKGGADFII
ICTNTMHKVVEKIKENIHIPILHIADATAKEIKRKDIQTVGLLGTKYTMEQDFYKSRIEENHIKVVVPSEKDRDKVNEVI
YTELCLGKITSQSREYYKRVIENLIQEGAQGIILGCTEIGLLIKQEDVSVPIFDTTYIHAVEAVHFALRNRV

Specific function: Unknown

COG id: COG1794

COG function: function code M; Aspartate racemase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the aspartate/glutamate racemases family [H]

Homologues:

Organism=Escherichia coli, GI1789205, Length=229, Percent_Identity=55.8951965065502, Blast_Score=276, Evalue=1e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015942
- InterPro:   IPR001920
- InterPro:   IPR018187
- InterPro:   IPR004380 [H]

Pfam domain/function: PF01177 Asp_Glu_race [H]

EC number: 5.1.1.13

Molecular weight: Translated: 26223; Mature: 26223

Theoretical pI: Translated: 5.91; Mature: 5.91

Prosite motif: PS00923 ASP_GLU_RACEMASE_1 ; PS00924 ASP_GLU_RACEMASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIGLIGGMSWESTAEYYRIINEEIKSRLGGLHSAKCLINSVDFEEIERYQSSGDWDSA
CCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCHH
GEILGNAAYSLQKGGADFIIICTNTMHKVVEKIKENIHIPILHIADATAKEIKRKDIQTV
HHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
GLLGTKYTMEQDFYKSRIEENHIKVVVPSEKDRDKVNEVIYTELCLGKITSQSREYYKRV
HHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IENLIQEGAQGIILGCTEIGLLIKQEDVSVPIFDTTYIHAVEAVHFALRNRV
HHHHHHCCCCEEEEEHHHHCEEEEECCCCCEEECHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKTIGLIGGMSWESTAEYYRIINEEIKSRLGGLHSAKCLINSVDFEEIERYQSSGDWDSA
CCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCHH
GEILGNAAYSLQKGGADFIIICTNTMHKVVEKIKENIHIPILHIADATAKEIKRKDIQTV
HHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
GLLGTKYTMEQDFYKSRIEENHIKVVVPSEKDRDKVNEVIYTELCLGKITSQSREYYKRV
HHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IENLIQEGAQGIILGCTEIGLLIKQEDVSVPIFDTTYIHAVEAVHFALRNRV
HHHHHHCCCCEEEEEHHHHCEEEEECCCCCEEECHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: L-aspartate

Specific reaction: L-aspartate = D-aspartate

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6350602; 2836407; 9278503 [H]