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The map label for this gene is gntR [H]

Identifier: 118477238

GI number: 118477238

Start: 1688755

End: 1689474

Strand: Reverse

Name: gntR [H]

Synonym: BALH_1544

Alternate gene names: 118477238

Gene position: 1689474-1688755 (Counterclockwise)

Preceding gene: 118477239

Following gene: 118477236

Centisome position: 32.14

GC content: 32.92

Gene sequence:

>720_bases
TTGTTCATGAGAAAAAGGAAAATATACAATGAAAGGATTGAATTCACTATGCCTATCCCTCAAAATTATAAAAAACAAGG
AAGAGTTTCGGCAAAATCACTCGTTTTAAATCAACTACAAGATTGGATTATTGAAGGTGTACTGAAGCCCGATGAAAAAA
TTAATGATGGGGAATTGGCTGAAGCACTAGGAGTAAGTAGAACACCTGTAAGAGAAGCACTTCAAATATTAGAGCTTTCT
GGATTAGTGGAAATGGTACCTGGGCAAAAAACAAAAATTGCTCCTATTAAGTTAGACGACATACCAACTATTTATGAAAC
GATGGCTGGTCTTCACTCTATTATAGGTAAGCAAGCACTTCAACACACTACAGAAGCTGATTTGAAACTACTTTCTGAAA
TAAATAATGATTTTCAGTACTCTATAGAGAAAAAAAACGCAAAACAAGCTTTAGAATTAGATATACAATTTCACAATGCA
ATTTCTTCTATTGCTAAAAATCAATATATTGAACCCTTTCTAGAAAATATGCAACTTCACGTTTTACGCCTTGAATATTT
ATTTTTCCAAAACTTTGTTCCAGCAAGTCAATCTATTGATGAACATCACGCTATCATTCAAGCACTGCAGAAGCAGGATG
AAAAACAAATGGAACAAATGATGACTCAAAACTGGCTCCGTCCAATGAAAGAAATACAAAAAATAATTTCTACGAAATAA

Upstream 100 bases:

>100_bases
GTACCGTTTCAATCTTTTCAGTTATTAGGGGCTTTTTGTGTCATTGTAATGGTGCTCATCTTAAGTCAAAAACCAGATGA
AGGGAAACCAGAATTAAAGC

Downstream 100 bases:

>100_bases
AAAGAGAGCTGGCTACGATTTTATGTAGCCAGCTCTCTTTTTACTAATATATATAACTATGCCTGAATATCTGCATAATC
TTCCATATCCTCGTACTCTT

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MFMRKRKIYNERIEFTMPIPQNYKKQGRVSAKSLVLNQLQDWIIEGVLKPDEKINDGELAEALGVSRTPVREALQILELS
GLVEMVPGQKTKIAPIKLDDIPTIYETMAGLHSIIGKQALQHTTEADLKLLSEINNDFQYSIEKKNAKQALELDIQFHNA
ISSIAKNQYIEPFLENMQLHVLRLEYLFFQNFVPASQSIDEHHAIIQALQKQDEKQMEQMMTQNWLRPMKEIQKIISTK

Sequences:

>Translated_239_residues
MFMRKRKIYNERIEFTMPIPQNYKKQGRVSAKSLVLNQLQDWIIEGVLKPDEKINDGELAEALGVSRTPVREALQILELS
GLVEMVPGQKTKIAPIKLDDIPTIYETMAGLHSIIGKQALQHTTEADLKLLSEINNDFQYSIEKKNAKQALELDIQFHNA
ISSIAKNQYIEPFLENMQLHVLRLEYLFFQNFVPASQSIDEHHAIIQALQKQDEKQMEQMMTQNWLRPMKEIQKIISTK
>Mature_239_residues
MFMRKRKIYNERIEFTMPIPQNYKKQGRVSAKSLVLNQLQDWIIEGVLKPDEKINDGELAEALGVSRTPVREALQILELS
GLVEMVPGQKTKIAPIKLDDIPTIYETMAGLHSIIGKQALQHTTEADLKLLSEINNDFQYSIEKKNAKQALELDIQFHNA
ISSIAKNQYIEPFLENMQLHVLRLEYLFFQNFVPASQSIDEHHAIIQALQKQDEKQMEQMMTQNWLRPMKEIQKIISTK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=182, Percent_Identity=26.9230769230769, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27673; Mature: 27673

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFMRKRKIYNERIEFTMPIPQNYKKQGRVSAKSLVLNQLQDWIIEGVLKPDEKINDGELA
CCCHHHHHHHHHCEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
EALGVSRTPVREALQILELSGLVEMVPGQKTKIAPIKLDDIPTIYETMAGLHSIIGKQAL
HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCEECCCCCHHHHHHHHHHHHHHHHHH
QHTTEADLKLLSEINNDFQYSIEKKNAKQALELDIQFHNAISSIAKNQYIEPFLENMQLH
HHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRLEYLFFQNFVPASQSIDEHHAIIQALQKQDEKQMEQMMTQNWLRPMKEIQKIISTK
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MFMRKRKIYNERIEFTMPIPQNYKKQGRVSAKSLVLNQLQDWIIEGVLKPDEKINDGELA
CCCHHHHHHHHHCEEECCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
EALGVSRTPVREALQILELSGLVEMVPGQKTKIAPIKLDDIPTIYETMAGLHSIIGKQAL
HHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCEECCEECCCCCHHHHHHHHHHHHHHHHHH
QHTTEADLKLLSEINNDFQYSIEKKNAKQALELDIQFHNAISSIAKNQYIEPFLENMQLH
HHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLRLEYLFFQNFVPASQSIDEHHAIIQALQKQDEKQMEQMMTQNWLRPMKEIQKIISTK
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]