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The map label for this gene is yrkO [H]

Identifier: 118477118

GI number: 118477118

Start: 1559248

End: 1560555

Strand: Reverse

Name: yrkO [H]

Synonym: BALH_1420

Alternate gene names: 118477118

Gene position: 1560555-1559248 (Counterclockwise)

Preceding gene: 118477123

Following gene: 118477114

Centisome position: 29.68

GC content: 34.48

Gene sequence:

>1308_bases
TTGAAAAAGGGTAAAACTTGTTGTGCACTCTTATTATATCTCATCTTACATAACTTAATAGTTAAAAAAAATGGAAATCT
ACCCTATACCCTCCATCTTATATTTTGTATAATAAAAGGGAATTACTTAACAAGGAGGAAAATAATGACACAAAATATTT
CACAAGGCGAGAGGATACACTCCATCGATATTATTAGAGGAATAGCTGTACTAGGTATTTTTCTTGTTAACTGGCCCATT
ATCGCTGGGATTGACTCACGTGATCTTTCAGGAGTTTACGAGGGGCTAGATAGCTATATCCGTCTATTTTACGATATGTT
CATTCAAACAAAGTTTTATACTATCTTTTCATTTTTATTCGGCCTAGGCTTTTACATTTTTATGACTCGTGCTGAAGCAA
AAACAGATCGACCAAAAACTCTATTTGTTCGTCGTTTACTTATTTTATTATTATTCGGTTTCTTACATTACGTTCTTTTA
TGGGACGGAGACATTTTACATAGTTATGCAATCGCTGGATTTTTCTTATTTTTATTTTATAAGAGAAAACCTCGTACTAT
TTTAATATGGGCAATCGTTTTATTAAGTATTTTTCAATTTCTTATGCTAATCGCTACTATTGGTATTGCCTTCATGCCAA
AGGAGGAACTTGGGTTATCCTTACCAATCATGCCACTTGAAGACTGGGTGTCACAAATACAAAATCGTTTCCATGCTTTT
TATGCTAATGGAATTGGACTAAATGTATCAATGCTCCCAGAAACAGTTGGGCTATTTTTACTCGGTTTATATGCCGGTAA
AAAAGACATTTTCCGCCGCACGAAAGAGTTAGATCCAAAGCTAAAAAAATGGCAAATCATTATGTTCGTTTTAACATTAC
CGTTTTGGTTCTTTATGGTTCGTTATTTCTTATCAACATCGTCTTATGAACCACTTTATATGCAAGGGCTTGCAATGTTT
AGCGGAAAAACATTATTCATCTTCTACATTTTCACTCTTATGCGTTTATTACAAAAAGAAAAATGGCAAACATTATTACG
TCCGTTCCAGTACGTTGGGCGAATGGCATTAACAAACTACATTTCACATACAATTGTTACATTACTTGTATTTGGTCTAT
TACTTAAAAGTTATTATACAGCTCCATTATGGGTAGGACCACTATTTTGCGTCGGTTTCTACACGTTACAAATCTTTATT
AGCCGCTGGTGGCTGTCACGTTATCAATACGGGCCACTTGAGTACATTTGGCGTCTTGGTACGTACGGGAAAATGATGCC
ACTTAAAAAGAAAAGCAAGGTCTCATAA

Upstream 100 bases:

>100_bases
AATGATTATCACTTTTGAATACATTTTATCATTAAAGAGAATCATTATCAACAATTTTCATAAAGAAAGCCCCTTATAAG
AAGGAGCTTCACTGCCTGTT

Downstream 100 bases:

>100_bases
CAGTAACGAATCGGTTTTGAAATACAAAAATAAAAGGTTCAAATCGCATACGATTTGAACCTTTTATCAATTTTACGCTT
CTCTTACCGCACTTTGCATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MKKGKTCCALLLYLILHNLIVKKNGNLPYTLHLIFCIIKGNYLTRRKIMTQNISQGERIHSIDIIRGIAVLGIFLVNWPI
IAGIDSRDLSGVYEGLDSYIRLFYDMFIQTKFYTIFSFLFGLGFYIFMTRAEAKTDRPKTLFVRRLLILLLFGFLHYVLL
WDGDILHSYAIAGFFLFLFYKRKPRTILIWAIVLLSIFQFLMLIATIGIAFMPKEELGLSLPIMPLEDWVSQIQNRFHAF
YANGIGLNVSMLPETVGLFLLGLYAGKKDIFRRTKELDPKLKKWQIIMFVLTLPFWFFMVRYFLSTSSYEPLYMQGLAMF
SGKTLFIFYIFTLMRLLQKEKWQTLLRPFQYVGRMALTNYISHTIVTLLVFGLLLKSYYTAPLWVGPLFCVGFYTLQIFI
SRWWLSRYQYGPLEYIWRLGTYGKMMPLKKKSKVS

Sequences:

>Translated_435_residues
MKKGKTCCALLLYLILHNLIVKKNGNLPYTLHLIFCIIKGNYLTRRKIMTQNISQGERIHSIDIIRGIAVLGIFLVNWPI
IAGIDSRDLSGVYEGLDSYIRLFYDMFIQTKFYTIFSFLFGLGFYIFMTRAEAKTDRPKTLFVRRLLILLLFGFLHYVLL
WDGDILHSYAIAGFFLFLFYKRKPRTILIWAIVLLSIFQFLMLIATIGIAFMPKEELGLSLPIMPLEDWVSQIQNRFHAF
YANGIGLNVSMLPETVGLFLLGLYAGKKDIFRRTKELDPKLKKWQIIMFVLTLPFWFFMVRYFLSTSSYEPLYMQGLAMF
SGKTLFIFYIFTLMRLLQKEKWQTLLRPFQYVGRMALTNYISHTIVTLLVFGLLLKSYYTAPLWVGPLFCVGFYTLQIFI
SRWWLSRYQYGPLEYIWRLGTYGKMMPLKKKSKVS
>Mature_435_residues
MKKGKTCCALLLYLILHNLIVKKNGNLPYTLHLIFCIIKGNYLTRRKIMTQNISQGERIHSIDIIRGIAVLGIFLVNWPI
IAGIDSRDLSGVYEGLDSYIRLFYDMFIQTKFYTIFSFLFGLGFYIFMTRAEAKTDRPKTLFVRRLLILLLFGFLHYVLL
WDGDILHSYAIAGFFLFLFYKRKPRTILIWAIVLLSIFQFLMLIATIGIAFMPKEELGLSLPIMPLEDWVSQIQNRFHAF
YANGIGLNVSMLPETVGLFLLGLYAGKKDIFRRTKELDPKLKKWQIIMFVLTLPFWFFMVRYFLSTSSYEPLYMQGLAMF
SGKTLFIFYIFTLMRLLQKEKWQTLLRPFQYVGRMALTNYISHTIVTLLVFGLLLKSYYTAPLWVGPLFCVGFYTLQIFI
SRWWLSRYQYGPLEYIWRLGTYGKMMPLKKKSKVS

Specific function: Involved in transport (Potential) [H]

COG id: COG2311

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788475, Length=132, Percent_Identity=32.5757575757576, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007349 [H]

Pfam domain/function: PF04235 DUF418 [H]

EC number: NA

Molecular weight: Translated: 51121; Mature: 51121

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCCCCCCCCCCCC
>Mature Secondary Structure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CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]