Click here to switch to the map view.

The map label for this gene is ldcA [H]

Identifier: 118476934

GI number: 118476934

Start: 1376492

End: 1377412

Strand: Reverse

Name: ldcA [H]

Synonym: BALH_1226

Alternate gene names: 118476934

Gene position: 1377412-1376492 (Counterclockwise)

Preceding gene: 118476936

Following gene: 118476930

Centisome position: 26.2

GC content: 38.55

Gene sequence:

>921_bases
ATGATATATCCAAATGCATTACAACAAGGTGATACAGTAATGATTATTGCACCGTCCGGCCCACCAACAATAGAAAATGT
ATTAAAAGGTGTAAACGTACTACAAGAAATGGGTTTATCTGTAGTAATCGGGAAGAGTGTTTATGAGAAATATGGATATT
TAGCTGGAAGTGATCAAGTCCGGCTCGACGATATACATGAAGCATTTTCAAATCATGAGGTAAAGGCCATTTTCTGTGCA
CGAGGTGGTTACGGTAGCGCTCGTCTCCTCCCTCACATTCAATATGAAATCATTCGGCAAAATCCTAAAATCTTTTGGGG
ATATAGCGATATTACAGCTTTACATACTGCCTTTTCACGTTATGCAAAGCTCGTTACTTTTCATGGCCCAATGGTTGAAG
AGTTAGGAAAAGGTGTAGATTCTCTTTCTTTATCTTCTTTCAATCAACTATTCCATCCGTACTCCACCATCTTATCTGCT
TCAGAATGTATCGTACCCACCCCATCCTGTGCAGTTACAGGCACGTTAGTGGGAGGGAATTTAACTGTATTAACGAGTAT
AATCGGCTCATCCTATGAGATAAATACAGCTAATAAACTTTTATTGCTTGAAGACATTGGGGAAGAACCATATCGCATTG
ACCGTATGTTAAATCAGCTACTTTTATCTGGAAAGTTTAATGAATGCAGTGGTGTTATTTTTACAAGCTGTCACGACTGT
ACTCCTTCTAAACCATCTCAATCATTGCAAACAATACTATATGAATATTTCGCACCGTATCATATACCTGTCCTATTCGG
TTTACCGATTGGACATATAAGCCCAAACATTGGGATTCCTCTTGGAGCTACAGCGACAATAAATACAAATAATAAAACAC
TCTCCATTTCCTCTGGCGTAGCCACTCCGTTTTCAAATTAA

Upstream 100 bases:

>100_bases
TCCCCTTATATCTTCTTTATTTGACAAACTTTCTCCTTCTTTTACAAGGGTTGAACTTCCTATGAAGCGAATATATTGAA
AGTGAAGGAGGCTGAAAACA

Downstream 100 bases:

>100_bases
AAAAGGAAAAGCGATTCAGCTTTTCCTTTTATTTATAATAATTAAAGATTCGTCCAGATGCGATATCTGCAATTTCTTCT
GGAATAAATGTTTTACTAAT

Product: muramoyltetrapeptide carboxypeptidase

Products: NA

Alternate protein names: LD-carboxypeptidase [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MIYPNALQQGDTVMIIAPSGPPTIENVLKGVNVLQEMGLSVVIGKSVYEKYGYLAGSDQVRLDDIHEAFSNHEVKAIFCA
RGGYGSARLLPHIQYEIIRQNPKIFWGYSDITALHTAFSRYAKLVTFHGPMVEELGKGVDSLSLSSFNQLFHPYSTILSA
SECIVPTPSCAVTGTLVGGNLTVLTSIIGSSYEINTANKLLLLEDIGEEPYRIDRMLNQLLLSGKFNECSGVIFTSCHDC
TPSKPSQSLQTILYEYFAPYHIPVLFGLPIGHISPNIGIPLGATATINTNNKTLSISSGVATPFSN

Sequences:

>Translated_306_residues
MIYPNALQQGDTVMIIAPSGPPTIENVLKGVNVLQEMGLSVVIGKSVYEKYGYLAGSDQVRLDDIHEAFSNHEVKAIFCA
RGGYGSARLLPHIQYEIIRQNPKIFWGYSDITALHTAFSRYAKLVTFHGPMVEELGKGVDSLSLSSFNQLFHPYSTILSA
SECIVPTPSCAVTGTLVGGNLTVLTSIIGSSYEINTANKLLLLEDIGEEPYRIDRMLNQLLLSGKFNECSGVIFTSCHDC
TPSKPSQSLQTILYEYFAPYHIPVLFGLPIGHISPNIGIPLGATATINTNNKTLSISSGVATPFSN
>Mature_306_residues
MIYPNALQQGDTVMIIAPSGPPTIENVLKGVNVLQEMGLSVVIGKSVYEKYGYLAGSDQVRLDDIHEAFSNHEVKAIFCA
RGGYGSARLLPHIQYEIIRQNPKIFWGYSDITALHTAFSRYAKLVTFHGPMVEELGKGVDSLSLSSFNQLFHPYSTILSA
SECIVPTPSCAVTGTLVGGNLTVLTSIIGSSYEINTANKLLLLEDIGEEPYRIDRMLNQLLLSGKFNECSGVIFTSCHDC
TPSKPSQSLQTILYEYFAPYHIPVLFGLPIGHISPNIGIPLGATATINTNNKTLSISSGVATPFSN

Specific function: May be involved in the degradation of peptidoglycan by catalyzing the cleavage of the terminal D-alanine residue from cytoplasmic murein peptides [H]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

Organism=Escherichia coli, GI1787441, Length=286, Percent_Identity=30.4195804195804, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 33191; Mature: 33191

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYPNALQQGDTVMIIAPSGPPTIENVLKGVNVLQEMGLSVVIGKSVYEKYGYLAGSDQV
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCE
RLDDIHEAFSNHEVKAIFCARGGYGSARLLPHIQYEIIRQNPKIFWGYSDITALHTAFSR
EHHHHHHHHCCCCEEEEEEECCCCCCCHHCHHHHHHHHHCCCCEEECCHHHHHHHHHHHH
YAKLVTFHGPMVEELGKGVDSLSLSSFNQLFHPYSTILSASECIVPTPSCAVTGTLVGGN
HHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCC
LTVLTSIIGSSYEINTANKLLLLEDIGEEPYRIDRMLNQLLLSGKFNECSGVIFTSCHDC
HHHHHHHHCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
TPSKPSQSLQTILYEYFAPYHIPVLFGLPIGHISPNIGIPLGATATINTNNKTLSISSGV
CCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCCCCCCCEEEEECCCCEEEEECCC
ATPFSN
CCCCCC
>Mature Secondary Structure
MIYPNALQQGDTVMIIAPSGPPTIENVLKGVNVLQEMGLSVVIGKSVYEKYGYLAGSDQV
CCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCE
RLDDIHEAFSNHEVKAIFCARGGYGSARLLPHIQYEIIRQNPKIFWGYSDITALHTAFSR
EHHHHHHHHCCCCEEEEEEECCCCCCCHHCHHHHHHHHHCCCCEEECCHHHHHHHHHHHH
YAKLVTFHGPMVEELGKGVDSLSLSSFNQLFHPYSTILSASECIVPTPSCAVTGTLVGGN
HHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCC
LTVLTSIIGSSYEINTANKLLLLEDIGEEPYRIDRMLNQLLLSGKFNECSGVIFTSCHDC
HHHHHHHHCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
TPSKPSQSLQTILYEYFAPYHIPVLFGLPIGHISPNIGIPLGATATINTNNKTLSISSGV
CCCCHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCCCCCCCEEEEECCCCEEEEECCC
ATPFSN
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]