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The map label for this gene is sinR [H]

Identifier: 118476856

GI number: 118476856

Start: 1299393

End: 1299737

Strand: Reverse

Name: sinR [H]

Synonym: BALH_1144

Alternate gene names: 118476856

Gene position: 1299737-1299393 (Counterclockwise)

Preceding gene: 118476868

Following gene: 118476849

Centisome position: 24.72

GC content: 34.78

Gene sequence:

>345_bases
TTGATAGAAAGGTGCGCAAATATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACT
TGCCGAAAAAGCTGGCGTTGCTAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTC
TTGAAAAAATCGCAGCAGTTCTACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAGCTAACCTAGAC
TCCGAATGGACACAGCTCGTCAAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTAC
AAAATGGAAGCAAAATCAAAAATAA

Upstream 100 bases:

>100_bases
CATTTTTTCAAACGTATGAAGCCATCCAGCCAGGCTCAATAGGTTTGTTCTTTTTAACGAAGTTTATGTTATAATAATGA
CATCATAAGACAACTACATA

Downstream 100 bases:

>100_bases
TAATAGAAAGAAGTGCTTACAAACCGCACTTCTTTTTTCTTTATAAAAAAAAGCGGGGGATACCCGCTTTTTTTATTATT
TTTCTTCTCCAGCTTCTTGG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 114

Protein sequence:

>114_residues
MIERCANMIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLD
SEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQK

Sequences:

>Translated_114_residues
MIERCANMIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLD
SEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQK
>Mature_114_residues
MIERCANMIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKEANLD
SEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQK

Specific function: Affects autolysin level and flagellation [H]

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Sin domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR012288
- InterPro:   IPR010981 [H]

Pfam domain/function: PF01381 HTH_3; PF08671 SinI [H]

EC number: NA

Molecular weight: Translated: 13137; Mature: 13137

Theoretical pI: Translated: 9.18; Mature: 9.18

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERCANMIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAV
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LQIPVDTLLHDETTKEANLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQK
HHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIERCANMIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAV
CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
LQIPVDTLLHDETTKEANLDSEWTQLVKDAMNSGVSKEQFREFLEFTKWKQNQK
HHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2121898 [H]