Click here to switch to the map view.

The map label for this gene is 118476802

Identifier: 118476802

GI number: 118476802

Start: 1236277

End: 1236795

Strand: Reverse

Name: 118476802

Synonym: BALH_1087

Alternate gene names: NA

Gene position: 1236795-1236277 (Counterclockwise)

Preceding gene: 118476803

Following gene: 118476801

Centisome position: 23.53

GC content: 36.61

Gene sequence:

>519_bases
ATGAAATTAGGCATTGTAATTTTTCCATCTAAAATGATTCAAGATAAAGCGAACGGATTGCGTAAACGTTATGATCCGCA
CTACGCATTAGTTCCGCCACATATTACATTGAAAACACCCTTTGAGACGCAAGATGAACAATTAGAATCGATTGTAAACG
AGTTACATACAATCGCAAGTAAAACGAACCCTTTCACCCTTCATGTTGGAAAAGTTGGTTCATTCGCACCTGTTAATAAT
GTTATTTATTTTAAAGTAGAAAAAACGCCTGAACTTACTTTCTTAAATGAGGAAATGCATAGCGGATTCTTTACACAAGA
ACGCGAATACGCTTTTGTACCTCATTTAACAATTGGACAAGGCTTATCAGATGCAGAGCATGCTGATGTACTAGGTCGAT
TACGTATGAAAGATTTTTATTACGAACAACCAATTGACCGTTTCCACCTACTATATCAATTAGAAAATGGAACATGGACT
GTACACGAAACATTCCGCCTTGGAAAGGGGAACAACTAA

Upstream 100 bases:

>100_bases
TGAAATAATAGAGAGCAGTATTCAGAATAATTTGATATAATAGATTAAGAGAGTTATTTTCTCAAAATCTAACTAGACTT
ACAAAGGGAGGAATTGGAAC

Downstream 100 bases:

>100_bases
TTTGCATGCACAGATCGTACAAACGGACGAACAACTAAGAGATGCATTCTCTGTACGTAAGCAAGTATTTGTGAAGGAAC
AGCAAGTCTCTGCTGAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNELHTIASKTNPFTLHVGKVGSFAPVNN
VIYFKVEKTPELTFLNEEMHSGFFTQEREYAFVPHLTIGQGLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWT
VHETFRLGKGNN

Sequences:

>Translated_172_residues
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNELHTIASKTNPFTLHVGKVGSFAPVNN
VIYFKVEKTPELTFLNEEMHSGFFTQEREYAFVPHLTIGQGLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWT
VHETFRLGKGNN
>Mature_172_residues
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNELHTIASKTNPFTLHVGKVGSFAPVNN
VIYFKVEKTPELTFLNEEMHSGFFTQEREYAFVPHLTIGQGLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWT
VHETFRLGKGNN

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0477 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1087_BACAH (A0RB53)

Other databases:

- EMBL:   CP000485
- RefSeq:   YP_893953.1
- ProteinModelPortal:   A0RB53
- SMR:   A0RB53
- STRING:   A0RB53
- EnsemblBacteria:   EBBACT00000070528
- GeneID:   4545401
- GenomeReviews:   CP000485_GR
- KEGG:   btl:BALH_1087
- eggNOG:   COG1514
- GeneTree:   EBGT00050000002956
- HOGENOM:   HBG313713
- OMA:   ANSYRKR
- ProtClustDB:   PRK13679
- BioCyc:   BTHU412694:BALH_1087-MONOMER
- GO:   GO:0005622
- HAMAP:   MF_01444
- InterPro:   IPR014051
- InterPro:   IPR009097
- InterPro:   IPR022932

Pfam domain/function: PF02834 2_5_RNA_ligase; SSF55144 Cyc_nuc_Pdiester

EC number: NA

Molecular weight: Translated: 19878; Mature: 19878

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNELHTIAS
CCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHC
KTNPFTLHVGKVGSFAPVNNVIYFKVEKTPELTFLNEEMHSGFFTQEREYAFVPHLTIGQ
CCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEEECHHHHCCCCCCCCCEEECCCEECCC
GLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWTVHETFRLGKGNN
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEECCCCCC
>Mature Secondary Structure
MKLGIVIFPSKMIQDKANGLRKRYDPHYALVPPHITLKTPFETQDEQLESIVNELHTIAS
CCEEEEECCHHHHHHHHHHHHHHCCCCEEEECCEEEEECCCCCCHHHHHHHHHHHHHHHC
KTNPFTLHVGKVGSFAPVNNVIYFKVEKTPELTFLNEEMHSGFFTQEREYAFVPHLTIGQ
CCCCEEEEECCCCCCCCCCCEEEEEEECCCCEEEECHHHHCCCCCCCCCEEECCCEECCC
GLSDAEHADVLGRLRMKDFYYEQPIDRFHLLYQLENGTWTVHETFRLGKGNN
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA