| Definition | Bacillus thuringiensis str. Al Hakam chromosome, complete genome. |
|---|---|
| Accession | NC_008600 |
| Length | 5,257,091 |
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The map label for this gene is helD [H]
Identifier: 118476652
GI number: 118476652
Start: 1062442
End: 1064772
Strand: Reverse
Name: helD [H]
Synonym: BALH_0930
Alternate gene names: 118476652
Gene position: 1064772-1062442 (Counterclockwise)
Preceding gene: 118476653
Following gene: 118476649
Centisome position: 20.25
GC content: 39.94
Gene sequence:
>2331_bases ATGAACAAAAAACTTGATCAAGAGCAAAAACGATTGGATACCGTAATCGAAACGATTACGCAGCAAATTGATAAGCTGGA AAACGAAACTGGCAGACGCCGGGCGGAAGTAATCAATATTCGTAAACACTTTTGGGATGATGTGAAAGTGAACACGGATA CTTTTGATGATTATCTTGAAACAGTTATCAACTTAAGACAACAAGCTCAGTCACTAGCTGTCACACAAATTACCCATAAG CACACCTTTAATCGACTTGCCGCATTAAGACGCATGCATAAAGCACCTTATTTTGGACGAATTGATTTCAAAGAAGAAGG AGAAGCTGCTGCGGAGCAAATTTATATTGGCGTTGCTACACTTACTGATGCTAGCGGAGAAAACTTTCTTATATACGACT GGCGCGCACCCATTTCGAGTGTCTACTACGATTATCCACCAGGACCGGCTGAATACAGTACACCAGGTGGCGTAATTCAC GGTAATGTGGAGAAAAAATTACAATACATTATTCAAAATGGCGAGATTGATTCTATGTTCGATACGAGCCTTACAATTGG CGATGAAATCTTGCAACAAGCGCTCGGAAAAGGCACAAACAAACATATGCAAAGTATTGTTGCTACGATTCAGCGCGAGC AAAATGAAATTATTCGTCACGATGAAGGCCGACTCCTTATCGTACAAGGAGCTGCTGGTAGTGGGAAAACATCTGCTGCC CTTCAGCGAATCGCCTACTTACTATATAAATATCGCGAATGGTTAAAAGCGGATCAAATTATTCTCTTCTCCCCTAACTC TATGTTCAACAGCTACGTTTCTAACGTACTACCTGAACTTGGTGAAGAGAATATGCAGCAAGTTACATTCCAAGAATATT TAAACCATAGACTAAGTAAATCATTTGACGTGGAAGACCCTTATGAACAATTAGAGTATATGCTAACTAAAACGAATAGT CCTACCTATAAAACGAGAAATGCGAGCATTCGATTTAAGGCATCTACTCAATTTTTCGAGATGATTCGAGCGTACAGACA ATCTCTTGAATCTTCAGGCATGCTATTTAGAGGAATGAAATTTAGAGGAAAACTGATTGTTTCTGCGAAAGAAATTACAG AGCAGTTTTACAATACCGACTCCTCCCTCCGCTTCCATAGTCGAATTGAGAAGTTAACGGATTGGCTAAATAAGCAAATA GATGTACTTGAAAAAGCAGAACTGAAAAAACCTTGGGTAGAAGAGGAAATTGAATTACTTAGTAAAGATGAATACCAAAA AGCTTATAAATATTTACAGAAAAAAGGCGAGTTTGACGACAACTCCTTTCAAGATTTTGAGAAAGAAACGAGAGTACTTG GGCGTATGATTGTCCGTAAAAAAATGAAGCCTCTTCGCAAAGGTGTTCAAACATTGCGTTTCATCAATTTCACAGGAATA TATAAACAGCTTTTCACAGATGCATCATGGGGTACTGGAGAAAAACCGAAAGAATGGGATGACATTTGCTCACTAACGGT GAACATGCTCGATGAAGGAAAACTATATTACGAGGACGCAACTCCATTTTTACTTTTAAAAGAGTTAATTGAAGGCTTCC AAACGAACAGATCGATTAAACACGTACTCGTAGATGAAGCACAAGATTATTCGCCGTTCCAGTTTGAGTTTTTAAAACGT CTCTTCCCTGCCGCAAGAATGACAGTACTTGGAGACTTTAACCAAGCAATATTTGCTCATGCGAGTGAAACGGTGAATTT CGATACACTTACGAATTTATACGGGCCAGACGAAACAAACGGCATTAACTTAACTCGTAGTTATCGCTCAACAAAACCGA TTATTGAATTTACACGTGCTCTCCTACCGGAAGGGAAGAACATTCACGCCTTTGAACGTGACGGTGAGAAACCTACAGTG ACGAAAGTAGCGAATGAGAGCGAACTGCACGAACATATTACTGCCAAAGTTGCGGAACTACAAAAAGAGCAGCACAATAC GATCGCAATTATATGTAAATCCGCAGCTGAAAGTGCCGCTGCATATGAGACACTTAGTCATATCGAGAATATTAAACTCG TGAAGAGTAACTCAGCCGAGTACGAGCAAGGCATCGTCGTGATCCCTGCTTACTTAGCGAAGGGTATCGAATTTGATGCC GTTATTATTTACAATGCGTCTAAAGATGTATACAACGATGAGAGCGTTCGTAGATTGTTCTATACTGCTTGTACGCGCGC GATGCATGAATTACAACTTTATAGCGTTGGCGAAGTTAGTCCTTTTATTCTTGAGGCTGATTCGGAGAGTTTTGAGCTTA TTACACCTTGA
Upstream 100 bases:
>100_bases TTTCTGAAATCAAAAGAACGTATTTATCCGTATCTTAATTGTACACCAAAACACATCTTCAGTCAACCTCTATTTTTCAC TTTTAAAGGAGTGCTATCGT
Downstream 100 bases:
>100_bases TAACAATCAAGGTGTTTCTTTTTTGTGCAGGATTTACACCTAAAAAAAGGAAGAAGAGCTACTATCAGCTCTTCTTCCTT TTTTAATAAATTACAAACTA
Product: ATP-dependent DNA helicase UvrD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 776; Mature: 776
Protein sequence:
>776_residues MNKKLDQEQKRLDTVIETITQQIDKLENETGRRRAEVINIRKHFWDDVKVNTDTFDDYLETVINLRQQAQSLAVTQITHK HTFNRLAALRRMHKAPYFGRIDFKEEGEAAAEQIYIGVATLTDASGENFLIYDWRAPISSVYYDYPPGPAEYSTPGGVIH GNVEKKLQYIIQNGEIDSMFDTSLTIGDEILQQALGKGTNKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAA LQRIAYLLYKYREWLKADQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLNHRLSKSFDVEDPYEQLEYMLTKTNS PTYKTRNASIRFKASTQFFEMIRAYRQSLESSGMLFRGMKFRGKLIVSAKEITEQFYNTDSSLRFHSRIEKLTDWLNKQI DVLEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFQDFEKETRVLGRMIVRKKMKPLRKGVQTLRFINFTGI YKQLFTDASWGTGEKPKEWDDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKR LFPAARMTVLGDFNQAIFAHASETVNFDTLTNLYGPDETNGINLTRSYRSTKPIIEFTRALLPEGKNIHAFERDGEKPTV TKVANESELHEHITAKVAELQKEQHNTIAIICKSAAESAAAYETLSHIENIKLVKSNSAEYEQGIVVIPAYLAKGIEFDA VIIYNASKDVYNDESVRRLFYTACTRAMHELQLYSVGEVSPFILEADSESFELITP
Sequences:
>Translated_776_residues MNKKLDQEQKRLDTVIETITQQIDKLENETGRRRAEVINIRKHFWDDVKVNTDTFDDYLETVINLRQQAQSLAVTQITHK HTFNRLAALRRMHKAPYFGRIDFKEEGEAAAEQIYIGVATLTDASGENFLIYDWRAPISSVYYDYPPGPAEYSTPGGVIH GNVEKKLQYIIQNGEIDSMFDTSLTIGDEILQQALGKGTNKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAA LQRIAYLLYKYREWLKADQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLNHRLSKSFDVEDPYEQLEYMLTKTNS PTYKTRNASIRFKASTQFFEMIRAYRQSLESSGMLFRGMKFRGKLIVSAKEITEQFYNTDSSLRFHSRIEKLTDWLNKQI DVLEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFQDFEKETRVLGRMIVRKKMKPLRKGVQTLRFINFTGI YKQLFTDASWGTGEKPKEWDDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKR LFPAARMTVLGDFNQAIFAHASETVNFDTLTNLYGPDETNGINLTRSYRSTKPIIEFTRALLPEGKNIHAFERDGEKPTV TKVANESELHEHITAKVAELQKEQHNTIAIICKSAAESAAAYETLSHIENIKLVKSNSAEYEQGIVVIPAYLAKGIEFDA VIIYNASKDVYNDESVRRLFYTACTRAMHELQLYSVGEVSPFILEADSESFELITP >Mature_776_residues MNKKLDQEQKRLDTVIETITQQIDKLENETGRRRAEVINIRKHFWDDVKVNTDTFDDYLETVINLRQQAQSLAVTQITHK HTFNRLAALRRMHKAPYFGRIDFKEEGEAAAEQIYIGVATLTDASGENFLIYDWRAPISSVYYDYPPGPAEYSTPGGVIH GNVEKKLQYIIQNGEIDSMFDTSLTIGDEILQQALGKGTNKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAA LQRIAYLLYKYREWLKADQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLNHRLSKSFDVEDPYEQLEYMLTKTNS PTYKTRNASIRFKASTQFFEMIRAYRQSLESSGMLFRGMKFRGKLIVSAKEITEQFYNTDSSLRFHSRIEKLTDWLNKQI DVLEKAELKKPWVEEEIELLSKDEYQKAYKYLQKKGEFDDNSFQDFEKETRVLGRMIVRKKMKPLRKGVQTLRFINFTGI YKQLFTDASWGTGEKPKEWDDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIKHVLVDEAQDYSPFQFEFLKR LFPAARMTVLGDFNQAIFAHASETVNFDTLTNLYGPDETNGINLTRSYRSTKPIIEFTRALLPEGKNIHAFERDGEKPTV TKVANESELHEHITAKVAELQKEQHNTIAIICKSAAESAAAYETLSHIENIKLVKSNSAEYEQGIVVIPAYLAKGIEFDA VIIYNASKDVYNDESVRRLFYTACTRAMHELQLYSVGEVSPFILEADSESFELITP
Specific function: Catalyzes the unwinding of duplex DNA in the 3' to 5' direction; this reaction is dependent on the hydrolysis of ATP [H]
COG id: COG3973
COG function: function code R; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase ATP-binding domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 89399; Mature: 89399
Theoretical pI: Translated: 5.71; Mature: 5.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKKLDQEQKRLDTVIETITQQIDKLENETGRRRAEVINIRKHFWDDVKVNTDTFDDYLE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHH TVINLRQQAQSLAVTQITHKHTFNRLAALRRMHKAPYFGRIDFKEEGEAAAEQIYIGVAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHEEEEEEE LTDASGENFLIYDWRAPISSVYYDYPPGPAEYSTPGGVIHGNVEKKLQYIIQNGEIDSMF EECCCCCEEEEEECCCCHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCHH DTSLTIGDEILQQALGKGTNKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAA CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH LQRIAYLLYKYREWLKADQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLNHRLSK HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC SFDVEDPYEQLEYMLTKTNSPTYKTRNASIRFKASTQFFEMIRAYRQSLESSGMLFRGMK CCCCCCHHHHHHHHHHCCCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHHCCCEEECCC FRGKLIVSAKEITEQFYNTDSSLRFHSRIEKLTDWLNKQIDVLEKAELKKPWVEEEIELL CCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH SKDEYQKAYKYLQKKGEFDDNSFQDFEKETRVLGRMIVRKKMKPLRKGVQTLRFINFTGI CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YKQLFTDASWGTGEKPKEWDDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIK HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHH HVLVDEAQDYSPFQFEFLKRLFPAARMTVLGDFNQAIFAHASETVNFDTLTNLYGPDETN HHHHHCCCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHCCCCCCHHHHHHCCCCCCCC GINLTRSYRSTKPIIEFTRALLPEGKNIHAFERDGEKPTVTKVANESELHEHITAKVAEL CCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHH QKEQHNTIAIICKSAAESAAAYETLSHIENIKLVKSNSAEYEQGIVVIPAYLAKGIEFDA HHHCCCEEEEEEEHHHHHHHHHHHHHHHHCEEEEECCCCHHHCCEEEEEHHHHCCCCCCE VIIYNASKDVYNDESVRRLFYTACTRAMHELQLYSVGEVSPFILEADSESFELITP EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEECCC >Mature Secondary Structure MNKKLDQEQKRLDTVIETITQQIDKLENETGRRRAEVINIRKHFWDDVKVNTDTFDDYLE CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHH TVINLRQQAQSLAVTQITHKHTFNRLAALRRMHKAPYFGRIDFKEEGEAAAEQIYIGVAT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHHHHEEEEEEE LTDASGENFLIYDWRAPISSVYYDYPPGPAEYSTPGGVIHGNVEKKLQYIIQNGEIDSMF EECCCCCEEEEEECCCCHHHCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHCCCCCCHH DTSLTIGDEILQQALGKGTNKHMQSIVATIQREQNEIIRHDEGRLLIVQGAAGSGKTSAA CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHH LQRIAYLLYKYREWLKADQIILFSPNSMFNSYVSNVLPELGEENMQQVTFQEYLNHRLSK HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCC SFDVEDPYEQLEYMLTKTNSPTYKTRNASIRFKASTQFFEMIRAYRQSLESSGMLFRGMK CCCCCCHHHHHHHHHHCCCCCCEEECCCEEEEECHHHHHHHHHHHHHHHHHCCCEEECCC FRGKLIVSAKEITEQFYNTDSSLRFHSRIEKLTDWLNKQIDVLEKAELKKPWVEEEIELL CCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH SKDEYQKAYKYLQKKGEFDDNSFQDFEKETRVLGRMIVRKKMKPLRKGVQTLRFINFTGI CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YKQLFTDASWGTGEKPKEWDDICSLTVNMLDEGKLYYEDATPFLLLKELIEGFQTNRSIK HHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHH HVLVDEAQDYSPFQFEFLKRLFPAARMTVLGDFNQAIFAHASETVNFDTLTNLYGPDETN HHHHHCCCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHCCCCCCHHHHHHCCCCCCCC GINLTRSYRSTKPIIEFTRALLPEGKNIHAFERDGEKPTVTKVANESELHEHITAKVAEL CCEEEECCCCCCHHHHHHHHHCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHHHHH QKEQHNTIAIICKSAAESAAAYETLSHIENIKLVKSNSAEYEQGIVVIPAYLAKGIEFDA HHHCCCEEEEEEEHHHHHHHHHHHHHHHHCEEEEECCCCHHHCCEEEEEHHHHCCCCCCE VIIYNASKDVYNDESVRRLFYTACTRAMHELQLYSVGEVSPFILEADSESFELITP EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]