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The map label for this gene is ycfH [C]

Identifier: 118475975

GI number: 118475975

Start: 219765

End: 220616

Strand: Direct

Name: ycfH [C]

Synonym: BALH_0211

Alternate gene names: 118475975

Gene position: 219765-220616 (Clockwise)

Preceding gene: 118475974

Following gene: 118475976

Centisome position: 4.18

GC content: 33.57

Gene sequence:

>852_bases
TTGTTAAATAATATAGATGACAAAACAAGAAGGGAGATCCTTTCTTGTTTTTTTTATGGGGGAATAAAGATGAAATGGAT
TGATAGTCATATACATGTCGACCAATACAAGGATGAAGAGAAAAGTAGATTACTGAAAGATGTGGAAAATAGTAAAGAGA
TACAGGGGCTTATTGCGGTATCTATGAATTATCAATCAAGTAAAGAAATCTTATCTTTAGCAAAACGATATTCCTTTGTA
CATCCAGCAGTAGGTTTTCATCCGGAGCAACCGATTCATAAAGAAGAATGTGAGAAAATTTATAAATTAATTGAGGATCA
TGTAGAGGATATAGTAGCGATTGGTGAAGTAGGCTTACCGTATTACTTAAGAAAAGAAGATGAGCATATTGCTATCACTT
CGTATATATCAGTGCTACAACAGTTTATTGAACTAGCTAGTAAATATGATTTACCAATTGTATTGCATGCAGTGTATGAA
GATGCTGACATTGTATGTGATTTACTTGAAGAATATAAAGTTTCGCGTGCACACTTTCATTGGTTTAAAGGAAGTGAAAC
AACAATGGAACGGATGATGAGGAACGGTTATTATATTTCTATTACACCAGATGTTTTGCATAAGGAGAAGATTAGAAAAA
TTGTTTCGTATTATCCTCTTGAATATATGATGGTAGAAACAGATGGACCGTGGGAATTTCGAGAGGGTGTTATGACGCAT
CCGAGAATGATTCAAGAGGTATTAAAGGAAATTAGTGTTATAAAAAACGTAGCTGTTGATAAGGTTGCAGAAACGATATA
TGAAAATACGATTCAATTTTACCCCGCTATTTTCCGGAAATTAAGACCCTAA

Upstream 100 bases:

>100_bases
CGTAAAGAAGAAGTAGTGAAGTTTCCAATTAAAGATTTCTGTAGCTACTTTACTGTTGCCGTAGTATGTATTGGATTATT
TGATATCATAACAAACTTAA

Downstream 100 bases:

>100_bases
ATGATTAAGATTTCACTTTATTTGAAGGGATAGGAGAGTTTCTCTTATCTCTTTTTATTATGGATATTTTTTCTAATATT
TTCTATAATTTATGATGTGT

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MLNNIDDKTRREILSCFFYGGIKMKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAVSMNYQSSKEILSLAKRYSFV
HPAVGFHPEQPIHKEECEKIYKLIEDHVEDIVAIGEVGLPYYLRKEDEHIAITSYISVLQQFIELASKYDLPIVLHAVYE
DADIVCDLLEEYKVSRAHFHWFKGSETTMERMMRNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWEFREGVMTH
PRMIQEVLKEISVIKNVAVDKVAETIYENTIQFYPAIFRKLRP

Sequences:

>Translated_283_residues
MLNNIDDKTRREILSCFFYGGIKMKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAVSMNYQSSKEILSLAKRYSFV
HPAVGFHPEQPIHKEECEKIYKLIEDHVEDIVAIGEVGLPYYLRKEDEHIAITSYISVLQQFIELASKYDLPIVLHAVYE
DADIVCDLLEEYKVSRAHFHWFKGSETTMERMMRNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWEFREGVMTH
PRMIQEVLKEISVIKNVAVDKVAETIYENTIQFYPAIFRKLRP
>Mature_283_residues
MLNNIDDKTRREILSCFFYGGIKMKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAVSMNYQSSKEILSLAKRYSFV
HPAVGFHPEQPIHKEECEKIYKLIEDHVEDIVAIGEVGLPYYLRKEDEHIAITSYISVLQQFIELASKYDLPIVLHAVYE
DADIVCDLLEEYKVSRAHFHWFKGSETTMERMMRNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWEFREGVMTH
PRMIQEVLKEISVIKNVAVDKVAETIYENTIQFYPAIFRKLRP

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=220, Percent_Identity=27.7272727272727, Blast_Score=92, Evalue=4e-19,
Organism=Homo sapiens, GI110349734, Length=220, Percent_Identity=27.7272727272727, Blast_Score=89, Evalue=4e-18,
Organism=Homo sapiens, GI226061853, Length=227, Percent_Identity=26.8722466960352, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI226061614, Length=213, Percent_Identity=26.7605633802817, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI226061595, Length=179, Percent_Identity=27.9329608938547, Blast_Score=76, Evalue=4e-14,
Organism=Escherichia coli, GI1787342, Length=261, Percent_Identity=26.0536398467433, Blast_Score=88, Evalue=7e-19,
Organism=Escherichia coli, GI87082439, Length=261, Percent_Identity=23.7547892720307, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI48994985, Length=189, Percent_Identity=26.4550264550265, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 33378; Mature: 33378

Theoretical pI: Translated: 5.94; Mature: 5.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNNIDDKTRREILSCFFYGGIKMKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAV
CCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHEEE
SMNYQSSKEILSLAKRYSFVHPAVGFHPEQPIHKEECEKIYKLIEDHVEDIVAIGEVGLP
EECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
YYLRKEDEHIAITSYISVLQQFIELASKYDLPIVLHAVYEDADIVCDLLEEYKVSRAHFH
CEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHE
WFKGSETTMERMMRNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWEFREGVMTH
EECCCHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHCCCCC
PRMIQEVLKEISVIKNVAVDKVAETIYENTIQFYPAIFRKLRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLNNIDDKTRREILSCFFYGGIKMKWIDSHIHVDQYKDEEKSRLLKDVENSKEIQGLIAV
CCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHHHHEEE
SMNYQSSKEILSLAKRYSFVHPAVGFHPEQPIHKEECEKIYKLIEDHVEDIVAIGEVGLP
EECCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
YYLRKEDEHIAITSYISVLQQFIELASKYDLPIVLHAVYEDADIVCDLLEEYKVSRAHFH
CEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCCHHHHHHHHHHHHHHHHHHE
WFKGSETTMERMMRNGYYISITPDVLHKEKIRKIVSYYPLEYMMVETDGPWEFREGVMTH
EECCCHHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHCCCCC
PRMIQEVLKEISVIKNVAVDKVAETIYENTIQFYPAIFRKLRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]