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The map label for this gene is 117920065

Identifier: 117920065

GI number: 117920065

Start: 1903713

End: 1904345

Strand: Direct

Name: 117920065

Synonym: Shewana3_1618

Alternate gene names: NA

Gene position: 1903713-1904345 (Clockwise)

Preceding gene: 117920061

Following gene: 117920066

Centisome position: 38.29

GC content: 38.55

Gene sequence:

>633_bases
TTGTTACATTTTAGCGTGTTAATAAATTGTGAGTGTCTAATTTTGGATCAATTAGTAAGACACAGCAGTGCAGATGTGGT
GCTGTTGACGGATATAGTGCTTCGCTGGGAGCATGAATCTCAACAGGTTGAATCGCAGTTATACCAATTTGCCTACCAGA
AATTTCGTAGTATTGCGTCAGAAGTTAGAGCAAAGTCTTTGGCTGAGTTTGAGCAAAATACGTTGCTTAGGATTTCCTGC
AACACTACCTCCCTTGTACATGACGCTTTTATTCGTGTGGCCCAAAGTCATGAGGTTACCGTTGAAAACAGCAGGGAGTT
TTATATGTTGTTTTCACAGGTCATTTACTCGATCCTCATTGATAATCTACGTAAGTCTCAGGCTAAAAAACGTCAAATTG
AGGCCCGTAGCTTGCTTCAAGCTTCTTCAGCTTTTCAACAACTATTTGAAGTTGAGCATTTACTAAAGAAGTTGGCGATT
GACTACCCGCGTCAGGTGTCTGTATTCATTTATAAATATGTTTGCTTGAGCTCATCGAAAGAAATTTCTCAAATGTTTAG
TATTTCAGAATCTTCGGTTGACAAGGATCTCTCTTTTATCAAGAAATACTTATCTATACACCTTACCGATTAA

Upstream 100 bases:

>100_bases
AGTCATTGTGCGGGTAACTGTGAATTTCGTCACCTTACTTACGGTAACTTAGCAAACAGATATAGCTTTTATTGCAACCA
GTTGTAAAATTTGGGAATTG

Downstream 100 bases:

>100_bases
ACCGGATGGAACCCGCATGTCTTCACTGTACGAACACTTTTCACGCCTGTCTGAATTATCTTCTTCCGAACAAGAGGCGT
ATTTGCAAACGCTTAAGCAT

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; RNA Polymerase Sigma Factor; DNA-Directed RNA Polymeracialized Sigma Subunit

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MLHFSVLINCECLILDQLVRHSSADVVLLTDIVLRWEHESQQVESQLYQFAYQKFRSIASEVRAKSLAEFEQNTLLRISC
NTTSLVHDAFIRVAQSHEVTVENSREFYMLFSQVIYSILIDNLRKSQAKKRQIEARSLLQASSAFQQLFEVEHLLKKLAI
DYPRQVSVFIYKYVCLSSSKEISQMFSISESSVDKDLSFIKKYLSIHLTD

Sequences:

>Translated_210_residues
MLHFSVLINCECLILDQLVRHSSADVVLLTDIVLRWEHESQQVESQLYQFAYQKFRSIASEVRAKSLAEFEQNTLLRISC
NTTSLVHDAFIRVAQSHEVTVENSREFYMLFSQVIYSILIDNLRKSQAKKRQIEARSLLQASSAFQQLFEVEHLLKKLAI
DYPRQVSVFIYKYVCLSSSKEISQMFSISESSVDKDLSFIKKYLSIHLTD
>Mature_210_residues
MLHFSVLINCECLILDQLVRHSSADVVLLTDIVLRWEHESQQVESQLYQFAYQKFRSIASEVRAKSLAEFEQNTLLRISC
NTTSLVHDAFIRVAQSHEVTVENSREFYMLFSQVIYSILIDNLRKSQAKKRQIEARSLLQASSAFQQLFEVEHLLKKLAI
DYPRQVSVFIYKYVCLSSSKEISQMFSISESSVDKDLSFIKKYLSIHLTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24411; Mature: 24411

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHFSVLINCECLILDQLVRHSSADVVLLTDIVLRWEHESQQVESQLYQFAYQKFRSIAS
CEEEEEEECCHHHHHHHHHHCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
EVRAKSLAEFEQNTLLRISCNTTSLVHDAFIRVAQSHEVTVENSREFYMLFSQVIYSILI
HHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHH
DNLRKSQAKKRQIEARSLLQASSAFQQLFEVEHLLKKLAIDYPRQVSVFIYKYVCLSSSK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH
EISQMFSISESSVDKDLSFIKKYLSIHLTD
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLHFSVLINCECLILDQLVRHSSADVVLLTDIVLRWEHESQQVESQLYQFAYQKFRSIAS
CEEEEEEECCHHHHHHHHHHCCCCCEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
EVRAKSLAEFEQNTLLRISCNTTSLVHDAFIRVAQSHEVTVENSREFYMLFSQVIYSILI
HHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHH
DNLRKSQAKKRQIEARSLLQASSAFQQLFEVEHLLKKLAIDYPRQVSVFIYKYVCLSSSK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCH
EISQMFSISESSVDKDLSFIKKYLSIHLTD
HHHHHHHCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA