Definition Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence.
Accession NC_008577
Length 4,972,204

Click here to switch to the map view.

The map label for this gene is 117920039

Identifier: 117920039

GI number: 117920039

Start: 1867839

End: 1868225

Strand: Direct

Name: 117920039

Synonym: Shewana3_1591

Alternate gene names: NA

Gene position: 1867839-1868225 (Clockwise)

Preceding gene: 117920038

Following gene: 117920040

Centisome position: 37.57

GC content: 48.06

Gene sequence:

>387_bases
ATGATCAGTTTGGCGATAGCATCAATCCTGAGCGCAGGTGTGTGCGTTTACCACTTACTGGAGGGGAAACAAAAGCGGCT
GCCGAAGCTGATGAGTGCGCCATTATCTGAGCCAGATAAGCAGTGGTTCAGCGCGCTATTTTATTGCCAATCGGTATTCT
ATGTATCCACTACCGCGGTGTTTTTGGTGTGTGCGCTCAAACTCCTTCCTGAAATGTATGGCTATAGCCTATTGCTGTTT
TTGGGGCTTAACTACGGTATGTATGCCATTTGGCTGTTTTACGTGGCGTTGTTATCCCCACCTCAAGCCAGCCTGCGACT
CCGTTTGCAATCCTTAGTCTTTTTATTGATAGCCTTGCTTGCGGTGCTGAGTCCACTGCAGGTATAA

Upstream 100 bases:

>100_bases
ATTAAGAGTAAGGCTGTTGTAAGAGAGCGTCGCTTTGGCAGGTCTTACTCCCTAGATGAACATGGGCCTAATGGCCGCGA
ATAAGGGCGAGAGATAACCA

Downstream 100 bases:

>100_bases
ACGCGTTCGTTGAACTAGGATTTCCCCAGCCAATAGACAGTACCTATATCCCTTTGGTTGATTTATGGATAAGGCTGAAG
ATTCACTTATCTATTTGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 128; Mature: 128

Protein sequence:

>128_residues
MISLAIASILSAGVCVYHLLEGKQKRLPKLMSAPLSEPDKQWFSALFYCQSVFYVSTTAVFLVCALKLLPEMYGYSLLLF
LGLNYGMYAIWLFYVALLSPPQASLRLRLQSLVFLLIALLAVLSPLQV

Sequences:

>Translated_128_residues
MISLAIASILSAGVCVYHLLEGKQKRLPKLMSAPLSEPDKQWFSALFYCQSVFYVSTTAVFLVCALKLLPEMYGYSLLLF
LGLNYGMYAIWLFYVALLSPPQASLRLRLQSLVFLLIALLAVLSPLQV
>Mature_128_residues
MISLAIASILSAGVCVYHLLEGKQKRLPKLMSAPLSEPDKQWFSALFYCQSVFYVSTTAVFLVCALKLLPEMYGYSLLLF
LGLNYGMYAIWLFYVALLSPPQASLRLRLQSLVFLLIALLAVLSPLQV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14297; Mature: 14297

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISLAIASILSAGVCVYHLLEGKQKRLPKLMSAPLSEPDKQWFSALFYCQSVFYVSTTAV
CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
FLVCALKLLPEMYGYSLLLFLGLNYGMYAIWLFYVALLSPPQASLRLRLQSLVFLLIALL
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AVLSPLQV
HHHHHCCC
>Mature Secondary Structure
MISLAIASILSAGVCVYHLLEGKQKRLPKLMSAPLSEPDKQWFSALFYCQSVFYVSTTAV
CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
FLVCALKLLPEMYGYSLLLFLGLNYGMYAIWLFYVALLSPPQASLRLRLQSLVFLLIALL
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
AVLSPLQV
HHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA