| Definition | Shewanella sp. ANA-3 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_008577 |
| Length | 4,972,204 |
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The map label for this gene is ybbP [H]
Identifier: 117919987
GI number: 117919987
Start: 1794542
End: 1797043
Strand: Direct
Name: ybbP [H]
Synonym: Shewana3_1539
Alternate gene names: 117919987
Gene position: 1794542-1797043 (Clockwise)
Preceding gene: 117919986
Following gene: 117919988
Centisome position: 36.09
GC content: 52.6
Gene sequence:
>2502_bases ATGGAGCTTAATTTGGCATGGCGCCTGTTTAAGCGAGAGCTGCAACAGGGGCAGTTGTTATTGATTATCCTCGCGATTAC CTTGGCGGTGCTGTCGGTCAGTGGTCTAGCGCGAGTCAGCGAGCGCTTGCAGGTCGCGATAAACGGGCAAGCGACTCAGT TTATCGCCGCCGATCGTATTATCGATTCTCCCGTTCAAATTGATGCCAGCATTCTGGCCAAGGCCGACGAGCTTGGTCTT AAGCATGTGACCAATATGCAATTTAACTCCATGGTGTATGCGGGGGATAAGTTTCAGTTAGTCACAGTGCGGGCGGTTGA GTCTGGTTATCCACTTAAGGGCGACATAAAACTTAAAGCGGCCAATGGCCAAGATGAAAAAGCTCAAGGCTTGCCCCACG CCGATGAGGTGTGGTTTGAGAGTCGCTTAGGGGGACTCTTGGGATACCCGCAAACCTTGGAGCTAGGCAACAGTGAGTTT CGTTTAAGTCAAGAAATCAGCCGCTTACCCGATGCGGGTTTTAATCCATTCGCTTCTTCCCCCGTGGTGTTAATGCGGAT TGAAGATGTCGCCAAGACTGGGGTTATTCAACCCGGCAGCCGAGTGACTTATCTGTATCAGTTTGTGGGTGAAGAAAGCG CCTTAAGCGCCTTTGAGAATAGCGTTAAACCGCTGCTGAATAATTCCCAGCGCTGGGTCGATGTGCAGTCTGGCGACTCA CCGATAGCGGGCGCGGTGAAGCGGGCGGAGCGTTTTTTACTGCTGGCAAGCTTGCTCGGTATTGCGCTGGCCTGCGCCGC GATTGGGATTGCCGCCCAGCGTTACTGCCAACGTCATTATGATGTGGTGGCTATGCTTAAAACCTTTGGCGCCTCATCAA CTCAAATTCGTCGACTATTCGGTATCCATTTACTGCTAGTGACACTATTTGGCATTGTGCTGGGGTTAATCGGCGGGGCA CTGCTGGATTTAGGCATTAATCAACTGTTACCCCCTGAAATCGCCGCCTATTCGCCGCCGTTGACTCGGCCGCTACTGCT TGGGATCAGCACTGGGCTTATCAGCGCCTTTATGTTTTCGGCCTATCCTTTAATGCGTCTGCTGGCGATTCCGCCACTGC GGGTCTTACAAAGACAGCTCGAAGGTTTGCAGCTCGGCATGTGGCTGCATTTACTCCTCAGTTTAGGGGCGATGGCACTG TTGGGATATTTGTATTCCCAAAGCTGGGCGCTGACACTCACAGTAGTTGCGGCTGTGCTGCTACTGGGCGTATTGCTCAG TATTTTAGGCTTTGTGATGATCCGCCTTGGTCACAGTGTCGGCATGAAAACCACCAATCCCTTGCAACTGGCACTCGCGG GTTTACGCCGCCGCGCGCGGCAAAATGCGGTGCAATTGGTGGGCTTTAGTGCGGCCTTGGTATTACTACTGACCATTTTG GCTCTGAGGCAAGATTTACTGAACGAGTGGCAAAAACAGCTGCCCGAGAATGCACCCAACTATTTCTTGGTCAATATCGC CCCCGATGATGCTAAGCCATTAAATGACTTTATGGCGCAAAAAGGCATAGCAGCCACGGATATCTATCCCGTGATTCGCG GCCGCTTGACTCAAATCAATGGTGAAACCTTGATTTCCGACGAGCAGGCCGAGGCGGGGGAGAAGGGGCGAGTAGGGATC TCCCGCGAGCTTAATCTCACCTGGCGCAATACCTTGCCCGCCAACAACGAGTTGGTCGAAGGGCATTTTAATCAGGCGGC GGATGAGGTTTCTGTCGAGTCAGGTGTTGCCGAGCGTTTAGGGCTAAAGCTGGGCGATACGCTGACCTATATGATTGATA ACCAAGAGCTTAAGGTCAAGGTAGCCAGTATCCGTGCCGTGCACTGGGAAACTATGCAGCCAAACTTCTTTATGATCTTC ACTCAAGAAGCGCTGGCGCCCTTTGCCTATACCTCGATGGCAAGCTTCTACCTCGACGACAAAAAAACGGATGTGCAAGG GAGTGATGCTCCGAAGAGCACAGTGATCCTCGAACTTATCCAGCAGTTCCCAACGGTGTCGATTATCGATGTCGGCGCTA TGGTAGGGCAATTGCGGCAGATTATTGAGCAGGTGTCCCTGTCGCTGACGTTGGTTTTGGTTCTCGTCTTACTGGCCAGT TCTTTAGTGCTTATCGCGCAAACTGAGGCGGGAATGGCGACACGCCAGCGTGAACTCGCAGTGCTGCGCACCTTTGGCGC TTCTGGCTGGTTACTGCGAAGTGCCACTGGGCTTGAATTTGCGTTACTGGGGGGCATAGCTGGGGTGCTTGCAGTGATAG TGGCGGAATTTGCCCTGTATCTGTTAAAGACCCAAGTATTTGAACTCAATGTGTATATGCACTGGCCCTGGTGGGGGATT GCCCCTGTCTGCGGTGCCTTGTTAGTTGCGCTGCTGGGTGTTTGGCGCTGCCGCCAATTGCTCAATCAATCCTGCGCCGA ATTATTAAAAGCGGGCGCTTAA
Upstream 100 bases:
>100_bases ACTGGTTATGGACAACGGCCACTTACAGGAAGAGTTAGATTCGGCCCAATCGCACAGCGTGAATGACAACCTTGAATTAA GCGCCAAGGAGGCCTAACCC
Downstream 100 bases:
>100_bases GTTAAGGTGCGTTAGCGGTTAAGACAAATGCCGTAATGCCATTATTTTTAAACCACTTTTTTAATGGCGATTATTTGAGT GTTTTAGGTTGAGGCAAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 833; Mature: 833
Protein sequence:
>833_residues MELNLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAINGQATQFIAADRIIDSPVQIDASILAKADELGL KHVTNMQFNSMVYAGDKFQLVTVRAVESGYPLKGDIKLKAANGQDEKAQGLPHADEVWFESRLGGLLGYPQTLELGNSEF RLSQEISRLPDAGFNPFASSPVVLMRIEDVAKTGVIQPGSRVTYLYQFVGEESALSAFENSVKPLLNNSQRWVDVQSGDS PIAGAVKRAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASSTQIRRLFGIHLLLVTLFGIVLGLIGGA LLDLGINQLLPPEIAAYSPPLTRPLLLGISTGLISAFMFSAYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMAL LGYLYSQSWALTLTVVAAVLLLGVLLSILGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLTIL ALRQDLLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMAQKGIAATDIYPVIRGRLTQINGETLISDEQAEAGEKGRVGI SRELNLTWRNTLPANNELVEGHFNQAADEVSVESGVAERLGLKLGDTLTYMIDNQELKVKVASIRAVHWETMQPNFFMIF TQEALAPFAYTSMASFYLDDKKTDVQGSDAPKSTVILELIQQFPTVSIIDVGAMVGQLRQIIEQVSLSLTLVLVLVLLAS SLVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVAEFALYLLKTQVFELNVYMHWPWWGI APVCGALLVALLGVWRCRQLLNQSCAELLKAGA
Sequences:
>Translated_833_residues MELNLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAINGQATQFIAADRIIDSPVQIDASILAKADELGL KHVTNMQFNSMVYAGDKFQLVTVRAVESGYPLKGDIKLKAANGQDEKAQGLPHADEVWFESRLGGLLGYPQTLELGNSEF RLSQEISRLPDAGFNPFASSPVVLMRIEDVAKTGVIQPGSRVTYLYQFVGEESALSAFENSVKPLLNNSQRWVDVQSGDS PIAGAVKRAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASSTQIRRLFGIHLLLVTLFGIVLGLIGGA LLDLGINQLLPPEIAAYSPPLTRPLLLGISTGLISAFMFSAYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMAL LGYLYSQSWALTLTVVAAVLLLGVLLSILGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLTIL ALRQDLLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMAQKGIAATDIYPVIRGRLTQINGETLISDEQAEAGEKGRVGI SRELNLTWRNTLPANNELVEGHFNQAADEVSVESGVAERLGLKLGDTLTYMIDNQELKVKVASIRAVHWETMQPNFFMIF TQEALAPFAYTSMASFYLDDKKTDVQGSDAPKSTVILELIQQFPTVSIIDVGAMVGQLRQIIEQVSLSLTLVLVLVLLAS SLVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVAEFALYLLKTQVFELNVYMHWPWWGI APVCGALLVALLGVWRCRQLLNQSCAELLKAGA >Mature_833_residues MELNLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAINGQATQFIAADRIIDSPVQIDASILAKADELGL KHVTNMQFNSMVYAGDKFQLVTVRAVESGYPLKGDIKLKAANGQDEKAQGLPHADEVWFESRLGGLLGYPQTLELGNSEF RLSQEISRLPDAGFNPFASSPVVLMRIEDVAKTGVIQPGSRVTYLYQFVGEESALSAFENSVKPLLNNSQRWVDVQSGDS PIAGAVKRAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASSTQIRRLFGIHLLLVTLFGIVLGLIGGA LLDLGINQLLPPEIAAYSPPLTRPLLLGISTGLISAFMFSAYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMAL LGYLYSQSWALTLTVVAAVLLLGVLLSILGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLTIL ALRQDLLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMAQKGIAATDIYPVIRGRLTQINGETLISDEQAEAGEKGRVGI SRELNLTWRNTLPANNELVEGHFNQAADEVSVESGVAERLGLKLGDTLTYMIDNQELKVKVASIRAVHWETMQPNFFMIF TQEALAPFAYTSMASFYLDDKKTDVQGSDAPKSTVILELIQQFPTVSIIDVGAMVGQLRQIIEQVSLSLTLVLVLVLLAS SLVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVAEFALYLLKTQVFELNVYMHWPWWGI APVCGALLVALLGVWRCRQLLNQSCAELLKAGA
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=812, Percent_Identity=37.3152709359606, Blast_Score=475, Evalue=1e-135,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 90834; Mature: 90834
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELNLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAINGQATQFIAADRI CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHH IDSPVQIDASILAKADELGLKHVTNMQFNSMVYAGDKFQLVTVRAVESGYPLKGDIKLKA HCCCHHCCHHHHHHHHHHCHHHHCCCCCCCEEEECCCEEEEEEEEECCCCCCCCCEEEEE ANGQDEKAQGLPHADEVWFESRLGGLLGYPQTLELGNSEFRLSQEISRLPDAGFNPFASS CCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC PVVLMRIEDVAKTGVIQPGSRVTYLYQFVGEESALSAFENSVKPLLNNSQRWVDVQSGDS CEEEEEEHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC PIAGAVKRAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASSTQIRRLF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH GIHLLLVTLFGIVLGLIGGALLDLGINQLLPPEIAAYSPPLTRPLLLGISTGLISAFMFS HHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHH AYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMALLGYLYSQSWALTLTVVAAVL HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LLGVLLSILGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLTIL HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALRQDLLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMAQKGIAATDIYPVIRGRLTQIN HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHCHHEEEC GETLISDEQAEAGEKGRVGISRELNLTWRNTLPANNELVEGHFNQAADEVSVESGVAERL CCEEECCCHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH GLKLGDTLTYMIDNQELKVKVASIRAVHWETMQPNFFMIFTQEALAPFAYTSMASFYLDD CCCCCCEEEEEECCCEEEEEEEHEEEEEEEECCCCEEEEEEHHHHCHHHHHHHHHHHCCC KKTDVQGSDAPKSTVILELIQQFPTVSIIDVGAMVGQLRQIIEQVSLSLTLVLVLVLLAS CCCCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SLVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVAEFALY CEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH LLKTQVFELNVYMHWPWWGIAPVCGALLVALLGVWRCRQLLNQSCAELLKAGA HHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MELNLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAINGQATQFIAADRI CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHH IDSPVQIDASILAKADELGLKHVTNMQFNSMVYAGDKFQLVTVRAVESGYPLKGDIKLKA HCCCHHCCHHHHHHHHHHCHHHHCCCCCCCEEEECCCEEEEEEEEECCCCCCCCCEEEEE ANGQDEKAQGLPHADEVWFESRLGGLLGYPQTLELGNSEFRLSQEISRLPDAGFNPFASS CCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC PVVLMRIEDVAKTGVIQPGSRVTYLYQFVGEESALSAFENSVKPLLNNSQRWVDVQSGDS CEEEEEEHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC PIAGAVKRAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASSTQIRRLF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH GIHLLLVTLFGIVLGLIGGALLDLGINQLLPPEIAAYSPPLTRPLLLGISTGLISAFMFS HHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHH AYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMALLGYLYSQSWALTLTVVAAVL HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LLGVLLSILGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLTIL HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALRQDLLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMAQKGIAATDIYPVIRGRLTQIN HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHCHHEEEC GETLISDEQAEAGEKGRVGISRELNLTWRNTLPANNELVEGHFNQAADEVSVESGVAERL CCEEECCCHHCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH GLKLGDTLTYMIDNQELKVKVASIRAVHWETMQPNFFMIFTQEALAPFAYTSMASFYLDD CCCCCCEEEEEECCCEEEEEEEHEEEEEEEECCCCEEEEEEHHHHCHHHHHHHHHHHCCC KKTDVQGSDAPKSTVILELIQQFPTVSIIDVGAMVGQLRQIIEQVSLSLTLVLVLVLLAS CCCCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SLVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVAEFALY CEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH LLKTQVFELNVYMHWPWWGIAPVCGALLVALLGVWRCRQLLNQSCAELLKAGA HHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]