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The map label for this gene is ycdZ [H]

Identifier: 117919946

GI number: 117919946

Start: 1746245

End: 1746736

Strand: Direct

Name: ycdZ [H]

Synonym: Shewana3_1498

Alternate gene names: 117919946

Gene position: 1746245-1746736 (Clockwise)

Preceding gene: 117919945

Following gene: 117919947

Centisome position: 35.12

GC content: 49.19

Gene sequence:

>492_bases
ATGGAAAATCGTTGGCAAGTCGCTATTTCGGCGGGGCTATTAGCCGCTGTCTGGTGTGGTATCGCAGATGCCTTTCATCT
CGTTACTTGGATTGGCTTTTTAGGTTGTAGCACTTTCTTTGCTCAGCCGAAGGCCGGTTTTCAAGGCGTGATGATGGCGT
GGTGCACCAATCTCTCCGGTGTGTTTTGGGCTTGGCTCATTATCAGCGGTAGCAGTTTCTTCGTATCGCCTGTGGCAGGT
TATCTGTTTACGGGTATCGCGACCTCGGCAATGTGCCTGCAGGCCAGTTATCAAAAATTAAGCTTTATTCCCGGTGCCTT
TATTGGCTGTTGTATTACCTTTGCCATGGCAGGGGATGTCGCCAATATTGTGCCATCCTTAGTGTTGGGCGCGCTGTTAG
GTTTTTGCATGAGTTTGTTGACGGCGCAGTTAGTTACTCTTCGCCAAAAATGGTCAGCATCAACAGGTTCTGAAATCGCC
AGTGCCGATTAA

Upstream 100 bases:

>100_bases
GATCGACACGGAAGTGAAGGGCGCTATAACACCATAATACAGCCGCACCTTAAGCACATTTGAGTATTAACTTCCGTGAA
CACAATACAAAGGGGGCATC

Downstream 100 bases:

>100_bases
ATTCATCATGTTTTAATCTGCAGATGATGCCTATGCGGTAAAAAAGTGATGGAATAGATGAGCTATAATGCTGATTTAGT
ACCCGATAGCCTTTAGGTCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MENRWQVAISAGLLAAVWCGIADAFHLVTWIGFLGCSTFFAQPKAGFQGVMMAWCTNLSGVFWAWLIISGSSFFVSPVAG
YLFTGIATSAMCLQASYQKLSFIPGAFIGCCITFAMAGDVANIVPSLVLGALLGFCMSLLTAQLVTLRQKWSASTGSEIA
SAD

Sequences:

>Translated_163_residues
MENRWQVAISAGLLAAVWCGIADAFHLVTWIGFLGCSTFFAQPKAGFQGVMMAWCTNLSGVFWAWLIISGSSFFVSPVAG
YLFTGIATSAMCLQASYQKLSFIPGAFIGCCITFAMAGDVANIVPSLVLGALLGFCMSLLTAQLVTLRQKWSASTGSEIA
SAD
>Mature_163_residues
MENRWQVAISAGLLAAVWCGIADAFHLVTWIGFLGCSTFFAQPKAGFQGVMMAWCTNLSGVFWAWLIISGSSFFVSPVAG
YLFTGIATSAMCLQASYQKLSFIPGAFIGCCITFAMAGDVANIVPSLVLGALLGFCMSLLTAQLVTLRQKWSASTGSEIA
SAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yahC [H]

Homologues:

Organism=Escherichia coli, GI87081825, Length=133, Percent_Identity=44.3609022556391, Blast_Score=110, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009476 [H]

Pfam domain/function: PF06496 DUF1097 [H]

EC number: NA

Molecular weight: Translated: 17245; Mature: 17245

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
8.0 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
8.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENRWQVAISAGLLAAVWCGIADAFHLVTWIGFLGCSTFFAQPKAGFQGVMMAWCTNLSG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHH
VFWAWLIISGSSFFVSPVAGYLFTGIATSAMCLQASYQKLSFIPGAFIGCCITFAMAGDV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
ANIVPSLVLGALLGFCMSLLTAQLVTLRQKWSASTGSEIASAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MENRWQVAISAGLLAAVWCGIADAFHLVTWIGFLGCSTFFAQPKAGFQGVMMAWCTNLSG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHH
VFWAWLIISGSSFFVSPVAGYLFTGIATSAMCLQASYQKLSFIPGAFIGCCITFAMAGDV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
ANIVPSLVLGALLGFCMSLLTAQLVTLRQKWSASTGSEIASAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11677609; 9457880 [H]